Wall clock time and date at job start Mon Mar 30 2020 02:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.41635 * 2 1 4 4 O 1.44644 * 110.50741 * 122.36480 * 2 1 3 5 5 C 1.44426 * 105.36490 * 159.18734 * 4 2 1 6 6 C 1.54480 * 104.80785 * 319.56296 * 5 4 2 7 7 C 1.54479 * 110.37045 * 237.69505 * 2 1 3 8 8 H 1.09000 * 110.51629 * 335.96620 * 7 2 1 9 9 C 1.50706 * 110.51034 * 98.54547 * 7 2 1 10 10 O 1.21274 * 119.99780 * 4.65533 * 9 7 2 11 11 N 1.34777 * 119.99681 * 184.66380 * 9 7 2 12 12 C 1.37138 * 120.00205 * 3.70159 * 11 9 7 13 13 H 1.08005 * 120.00415 * 308.19748 * 12 11 9 14 14 C 1.38897 * 119.99857 * 128.19844 * 12 11 9 15 15 N 1.31417 * 119.99682 * 173.11491 * 14 12 11 16 16 Si 1.86800 * 119.99695 * 352.83410 * 14 12 11 17 17 H 1.48503 * 109.46812 * 95.34952 * 16 14 12 18 18 H 1.48501 * 109.47017 * 215.34710 * 16 14 12 19 19 H 1.48502 * 109.47408 * 335.34816 * 16 14 12 20 20 C 1.39787 * 119.99899 * 183.70755 * 11 9 7 21 21 C 1.38966 * 120.07782 * 351.26283 * 20 11 9 22 22 C 1.38078 * 119.92408 * 179.81169 * 21 20 11 23 23 C 1.38309 * 120.07823 * 0.44326 * 22 21 20 24 24 C 1.38306 * 120.15448 * 359.79019 * 23 22 21 25 25 C 1.38088 * 120.07746 * 359.97438 * 24 23 22 26 26 H 1.09006 * 109.46709 * 182.30288 * 1 2 3 27 27 H 1.08993 * 109.47331 * 302.30020 * 1 2 3 28 28 H 1.08997 * 109.47025 * 62.31117 * 1 2 3 29 29 H 1.09006 * 110.37179 * 200.73036 * 5 4 2 30 30 H 1.09003 * 110.37450 * 78.39638 * 5 4 2 31 31 H 1.09001 * 110.50948 * 265.33848 * 6 5 4 32 32 H 1.08994 * 110.51340 * 142.61911 * 6 5 4 33 33 H 0.97003 * 119.99485 * 180.02562 * 15 14 12 34 34 H 1.08008 * 120.03458 * 0.02658 * 21 20 11 35 35 H 1.07998 * 119.96425 * 180.21066 * 22 21 20 36 36 H 1.07993 * 119.92527 * 179.76444 * 23 22 21 37 37 H 1.07995 * 119.96547 * 179.97438 * 24 23 22 38 38 H 1.08006 * 120.03747 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0367 -0.7252 1.1443 5 6 3.3901 -1.0909 0.7970 6 6 3.3174 -1.5083 -0.6886 7 6 2.0677 -0.7739 -1.2240 8 1 1.3267 -1.4902 -1.5788 9 6 2.4482 0.1803 -2.3267 10 8 2.3901 1.3771 -2.1397 11 7 2.8528 -0.2964 -3.5206 12 6 2.8460 -1.6472 -3.7576 13 1 3.3299 -2.3195 -3.0646 14 6 2.2169 -2.1506 -4.8890 15 7 2.3249 -3.4256 -5.1883 16 14 1.2109 -1.0167 -5.9807 17 1 2.0535 -0.5366 -7.1054 18 1 0.0416 -1.7570 -6.5191 19 1 0.7380 0.1449 -5.1855 20 6 3.2795 0.5859 -4.5173 21 6 3.1183 1.9561 -4.3502 22 6 3.5445 2.8250 -5.3350 23 6 4.1228 2.3327 -6.4909 24 6 4.2804 0.9694 -6.6628 25 6 3.8609 0.0949 -5.6799 26 1 -0.3633 -1.0269 0.0413 27 1 -0.3633 0.5491 0.8686 28 1 -0.3633 0.4775 -0.9100 29 1 3.7264 -1.9271 1.4100 30 1 4.0570 -0.2375 0.9191 31 1 3.1929 -2.5876 -0.7764 32 1 4.2101 -1.1811 -1.2214 33 1 1.8858 -3.7771 -5.9787 34 1 2.6634 2.3410 -3.4493 35 1 3.4227 3.8901 -5.2043 36 1 4.4518 3.0143 -7.2613 37 1 4.7320 0.5884 -7.5668 38 1 3.9839 -0.9696 -5.8150 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092345152.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:25 Heat of formation + Delta-G solvation = -33.410716 kcal Electronic energy + Delta-G solvation = -22213.779395 eV Core-core repulsion = 19022.023735 eV Total energy + Delta-G solvation = -3191.755660 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.48607 -38.90733 -37.28214 -35.24257 -32.30039 -32.13521 -31.16528 -30.14558 -29.03475 -26.11664 -25.25959 -22.60204 -21.97227 -21.50101 -20.69073 -19.14169 -18.22913 -16.60720 -15.86038 -15.80271 -15.57173 -15.16514 -14.98117 -14.35192 -13.90620 -13.56604 -13.50952 -13.14410 -12.85991 -12.75067 -12.46892 -12.19644 -12.04868 -11.97009 -11.47939 -11.30800 -11.02057 -10.92301 -10.70588 -10.62607 -10.35874 -10.29380 -10.15671 -9.59058 -9.39453 -9.00470 -8.43412 -8.08630 -7.15479 -6.62925 -4.53915 1.98153 2.12749 3.09128 3.19393 3.28257 3.43022 3.94899 4.03637 4.22517 4.52577 4.81404 5.04675 5.09868 5.30144 5.40910 5.57136 5.59212 5.63763 5.70647 5.77920 5.84040 5.85421 6.06872 6.08983 6.25677 6.30853 6.33827 6.36706 6.42337 6.48359 6.57897 6.76837 7.11067 7.14074 7.20914 7.25008 7.31318 7.67635 7.91177 8.12566 8.69065 9.00572 9.28356 10.40101 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.018499 B = 0.007879 C = 0.006601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.241592 B = 3553.066833 C = 4241.019781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.080 3.920 3 H 0.087 0.913 4 O -0.377 6.377 5 C 0.046 3.954 6 C -0.133 4.133 7 C -0.117 4.117 8 H 0.114 0.886 9 C 0.504 3.496 10 O -0.559 6.559 11 N -0.403 5.403 12 C -0.370 4.370 13 H 0.114 0.886 14 C 0.084 3.916 15 N -0.855 5.855 16 Si 0.867 3.133 17 H -0.252 1.252 18 H -0.288 1.288 19 H -0.260 1.260 20 C 0.154 3.846 21 C -0.184 4.184 22 C -0.111 4.111 23 C -0.170 4.170 24 C -0.107 4.107 25 C -0.153 4.153 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.280 0.720 34 H 0.178 0.822 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.113 0.887 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.661 4.573 3.678 5.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.023 3.977 3 H 0.104 0.896 4 O -0.297 6.297 5 C -0.031 4.031 6 C -0.171 4.171 7 C -0.138 4.138 8 H 0.132 0.868 9 C 0.297 3.703 10 O -0.443 6.443 11 N -0.112 5.112 12 C -0.496 4.496 13 H 0.131 0.869 14 C -0.126 4.126 15 N -0.488 5.488 16 Si 0.692 3.308 17 H -0.177 1.177 18 H -0.214 1.214 19 H -0.184 1.184 20 C 0.058 3.942 21 C -0.204 4.204 22 C -0.130 4.130 23 C -0.189 4.189 24 C -0.126 4.126 25 C -0.173 4.173 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.074 0.926 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.195 0.805 35 H 0.130 0.870 36 H 0.126 0.874 37 H 0.131 0.869 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.441 4.847 3.904 6.240 hybrid contribution -0.275 0.184 -1.209 1.254 sum 0.166 5.031 2.695 5.710 Atomic orbital electron populations 1.21756 0.93318 1.02576 1.02255 1.23015 0.95134 0.96215 0.83371 0.89561 1.89089 1.27156 1.74947 1.38492 1.23401 0.84772 0.99477 0.95439 1.22790 0.97676 1.01691 0.94942 1.22378 0.99715 0.97753 0.93961 0.86794 1.20629 0.77236 0.88104 0.84356 1.90201 1.55889 1.16296 1.81898 1.41407 1.52830 1.06865 1.10074 1.19119 1.38987 0.79037 1.12445 0.86856 1.25442 0.94543 0.95602 0.96987 1.69653 1.40338 1.12761 1.26049 0.87028 0.80350 0.81124 0.82252 1.17679 1.21439 1.18439 1.18484 0.95242 0.89975 0.90514 1.22756 1.03045 0.91840 1.02728 1.21012 0.99081 0.98922 0.93942 1.20922 1.04363 0.95186 0.98427 1.20826 1.00181 0.93231 0.98340 1.21102 1.01227 1.01380 0.93628 0.91904 0.92170 0.91099 0.89271 0.92631 0.89588 0.90370 0.90990 0.80544 0.86967 0.87369 0.86882 0.84271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.52 37.16 0.35 -1.77 16 2 C 0.08 1.37 3.32 -25.95 -0.09 1.28 16 3 H 0.09 1.57 6.85 -51.93 -0.36 1.21 16 4 O -0.38 -6.33 11.35 -35.23 -0.40 -6.73 16 5 C 0.05 0.68 7.64 37.93 0.29 0.97 16 6 C -0.13 -2.22 5.17 -25.16 -0.13 -2.35 16 7 C -0.12 -2.19 2.24 -90.20 -0.20 -2.39 16 8 H 0.11 2.21 7.58 -51.93 -0.39 1.81 16 9 C 0.50 11.01 6.72 -10.98 -0.07 10.94 16 10 O -0.56 -12.59 11.85 5.56 0.07 -12.52 16 11 N -0.40 -9.43 2.26 -58.97 -0.13 -9.57 16 12 C -0.37 -9.04 7.80 -14.93 -0.12 -9.15 16 13 H 0.11 2.83 6.62 -52.48 -0.35 2.48 16 14 C 0.08 2.13 4.29 -17.49 -0.07 2.05 16 15 N -0.86 -22.31 13.96 55.49 0.77 -21.53 16 16 Si 0.87 20.52 24.18 -169.99 -4.11 16.41 16 17 H -0.25 -5.81 6.08 56.52 0.34 -5.47 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 19 H -0.26 -6.50 6.92 56.52 0.39 -6.11 16 20 C 0.15 3.57 4.40 -83.70 -0.37 3.20 16 21 C -0.18 -4.00 9.03 -39.37 -0.36 -4.36 16 22 C -0.11 -2.08 10.04 -39.61 -0.40 -2.48 16 23 C -0.17 -3.04 10.04 -39.53 -0.40 -3.44 16 24 C -0.11 -2.07 9.79 -39.61 -0.39 -2.46 16 25 C -0.15 -3.40 5.81 -39.37 -0.23 -3.62 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.09 1.40 8.08 -51.93 -0.42 0.98 16 32 H 0.08 1.38 7.71 -51.93 -0.40 0.98 16 33 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 34 H 0.18 3.97 4.59 -55.95 -0.26 3.71 16 35 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 37 H 0.11 1.88 8.06 -52.49 -0.42 1.46 16 38 H 0.14 3.26 5.71 -52.48 -0.30 2.96 16 LS Contribution 299.83 15.07 4.52 4.52 Total: -1.00 -27.25 299.83 -6.52 -33.77 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -5.06 Total: 9.24 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -2.17 Total: -13.59 kcal Atomic # 7 Polarization: -31.74 SS G_CDS: 0.64 Total: -31.10 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.33 Total: -19.25 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.11 Total: 16.41 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.25 -6.52 -33.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092345152.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.359 kcal (2) G-P(sol) polarization free energy of solvation -27.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds