Wall clock time and date at job start Mon Mar 30 2020 02:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.41635 * 2 1 4 4 O 1.44644 * 110.50741 * 122.36480 * 2 1 3 5 5 C 1.44426 * 105.36490 * 159.18734 * 4 2 1 6 6 C 1.54480 * 104.80785 * 319.56296 * 5 4 2 7 7 C 1.54479 * 110.37045 * 237.69505 * 2 1 3 8 8 H 1.09000 * 110.51629 * 335.96620 * 7 2 1 9 9 C 1.50706 * 110.51034 * 98.54547 * 7 2 1 10 10 O 1.21274 * 119.99780 * 4.65533 * 9 7 2 11 11 N 1.34777 * 119.99681 * 184.66380 * 9 7 2 12 12 C 1.37138 * 120.00205 * 3.70159 * 11 9 7 13 13 H 1.08005 * 120.00415 * 308.19748 * 12 11 9 14 14 C 1.38897 * 119.99857 * 128.19844 * 12 11 9 15 15 N 1.31417 * 119.99682 * 173.11491 * 14 12 11 16 16 Si 1.86800 * 119.99695 * 352.83410 * 14 12 11 17 17 H 1.48503 * 109.46812 * 95.34952 * 16 14 12 18 18 H 1.48501 * 109.47017 * 215.34710 * 16 14 12 19 19 H 1.48502 * 109.47408 * 335.34816 * 16 14 12 20 20 C 1.39787 * 119.99899 * 183.70755 * 11 9 7 21 21 C 1.38966 * 120.07782 * 351.26283 * 20 11 9 22 22 C 1.38078 * 119.92408 * 179.81169 * 21 20 11 23 23 C 1.38309 * 120.07823 * 0.44326 * 22 21 20 24 24 C 1.38306 * 120.15448 * 359.79019 * 23 22 21 25 25 C 1.38088 * 120.07746 * 359.97438 * 24 23 22 26 26 H 1.09006 * 109.46709 * 182.30288 * 1 2 3 27 27 H 1.08993 * 109.47331 * 302.30020 * 1 2 3 28 28 H 1.08997 * 109.47025 * 62.31117 * 1 2 3 29 29 H 1.09006 * 110.37179 * 200.73036 * 5 4 2 30 30 H 1.09003 * 110.37450 * 78.39638 * 5 4 2 31 31 H 1.09001 * 110.50948 * 265.33848 * 6 5 4 32 32 H 1.08994 * 110.51340 * 142.61911 * 6 5 4 33 33 H 0.97003 * 119.99485 * 180.02562 * 15 14 12 34 34 H 1.08008 * 120.03458 * 0.02658 * 21 20 11 35 35 H 1.07998 * 119.96425 * 180.21066 * 22 21 20 36 36 H 1.07993 * 119.92527 * 179.76444 * 23 22 21 37 37 H 1.07995 * 119.96547 * 179.97438 * 24 23 22 38 38 H 1.08006 * 120.03747 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0367 -0.7252 1.1443 5 6 3.3901 -1.0909 0.7970 6 6 3.3174 -1.5083 -0.6886 7 6 2.0677 -0.7739 -1.2240 8 1 1.3267 -1.4902 -1.5788 9 6 2.4482 0.1803 -2.3267 10 8 2.3901 1.3771 -2.1397 11 7 2.8528 -0.2964 -3.5206 12 6 2.8460 -1.6472 -3.7576 13 1 3.3299 -2.3195 -3.0646 14 6 2.2169 -2.1506 -4.8890 15 7 2.3249 -3.4256 -5.1883 16 14 1.2109 -1.0167 -5.9807 17 1 2.0535 -0.5366 -7.1054 18 1 0.0416 -1.7570 -6.5191 19 1 0.7380 0.1449 -5.1855 20 6 3.2795 0.5859 -4.5173 21 6 3.1183 1.9561 -4.3502 22 6 3.5445 2.8250 -5.3350 23 6 4.1228 2.3327 -6.4909 24 6 4.2804 0.9694 -6.6628 25 6 3.8609 0.0949 -5.6799 26 1 -0.3633 -1.0269 0.0413 27 1 -0.3633 0.5491 0.8686 28 1 -0.3633 0.4775 -0.9100 29 1 3.7264 -1.9271 1.4100 30 1 4.0570 -0.2375 0.9191 31 1 3.1929 -2.5876 -0.7764 32 1 4.2101 -1.1811 -1.2214 33 1 1.8858 -3.7771 -5.9787 34 1 2.6634 2.3410 -3.4493 35 1 3.4227 3.8901 -5.2043 36 1 4.4518 3.0143 -7.2613 37 1 4.7320 0.5884 -7.5668 38 1 3.9839 -0.9696 -5.8150 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092345152.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:24 Heat of formation + Delta-G solvation = -49.159385 kcal Electronic energy + Delta-G solvation = -22214.462309 eV Core-core repulsion = 19022.023735 eV Total energy + Delta-G solvation = -3192.438574 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.12181 -40.35108 -38.84464 -36.99657 -34.19769 -33.56667 -32.45267 -31.72390 -30.60785 -27.58933 -26.99566 -24.13754 -23.41765 -22.97596 -22.21128 -20.85031 -19.93222 -18.20335 -17.62102 -17.36230 -17.02293 -16.68391 -16.34223 -15.96301 -15.66796 -15.10110 -15.06963 -14.66709 -14.55231 -14.28686 -14.11982 -13.86132 -13.38706 -13.28238 -13.21011 -12.71458 -12.64361 -12.55902 -12.17779 -12.10582 -11.98662 -11.87625 -11.66550 -11.34980 -10.84599 -10.76896 -10.09997 -9.68339 -8.88886 -8.55239 -6.47760 0.39390 0.53101 1.20564 1.27304 1.35885 1.73828 2.11033 2.34677 2.72676 2.89569 3.09049 3.66591 3.74174 3.77843 4.06166 4.15769 4.17478 4.28321 4.32438 4.42091 4.45257 4.63406 4.66237 4.72865 4.78274 4.83747 4.89633 4.98284 5.05397 5.08312 5.20427 5.23682 5.47362 5.57252 5.64825 5.71216 5.82748 5.96756 6.04399 6.37544 6.81126 7.18821 7.49364 8.48264 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.018499 B = 0.007879 C = 0.006601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.241592 B = 3553.066833 C = 4241.019781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.085 3.915 3 H 0.075 0.925 4 O -0.382 6.382 5 C 0.049 3.951 6 C -0.130 4.130 7 C -0.118 4.118 8 H 0.104 0.896 9 C 0.499 3.501 10 O -0.569 6.569 11 N -0.417 5.417 12 C -0.359 4.359 13 H 0.101 0.899 14 C 0.060 3.940 15 N -0.886 5.886 16 Si 0.908 3.092 17 H -0.241 1.241 18 H -0.287 1.287 19 H -0.282 1.282 20 C 0.125 3.875 21 C -0.205 4.205 22 C -0.106 4.106 23 C -0.157 4.157 24 C -0.108 4.108 25 C -0.175 4.175 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.119 0.881 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.283 0.717 34 H 0.166 0.834 35 H 0.147 0.853 36 H 0.153 0.847 37 H 0.142 0.858 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.038 6.032 3.249 6.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.028 3.972 3 H 0.093 0.907 4 O -0.301 6.301 5 C -0.027 4.027 6 C -0.168 4.168 7 C -0.140 4.140 8 H 0.122 0.878 9 C 0.292 3.708 10 O -0.454 6.454 11 N -0.126 5.126 12 C -0.485 4.485 13 H 0.119 0.881 14 C -0.147 4.147 15 N -0.521 5.521 16 Si 0.734 3.266 17 H -0.165 1.165 18 H -0.214 1.214 19 H -0.208 1.208 20 C 0.030 3.970 21 C -0.224 4.224 22 C -0.125 4.125 23 C -0.175 4.175 24 C -0.127 4.127 25 C -0.195 4.195 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.082 0.918 29 H 0.137 0.863 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.183 0.817 35 H 0.165 0.835 36 H 0.171 0.829 37 H 0.159 0.841 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.830 6.313 3.468 7.251 hybrid contribution -0.303 -0.159 -1.078 1.131 sum 0.527 6.154 2.391 6.623 Atomic orbital electron populations 1.21750 0.91818 1.03266 1.02833 1.22942 0.96358 0.95262 0.82680 0.90709 1.89084 1.28095 1.74817 1.38125 1.23540 0.84125 1.00876 0.94179 1.22763 0.96118 1.01562 0.96331 1.22426 1.00400 0.97355 0.93793 0.87825 1.21096 0.76709 0.88547 0.84478 1.90191 1.56316 1.16799 1.82090 1.41500 1.53773 1.06496 1.10854 1.19001 1.38004 0.79676 1.11855 0.88136 1.25756 0.95116 0.96064 0.97769 1.69690 1.41815 1.13607 1.26961 0.86411 0.79499 0.79252 0.81430 1.16510 1.21424 1.20781 1.18764 0.96696 0.90650 0.90927 1.22791 1.04247 0.91772 1.03635 1.21431 0.97516 1.00295 0.93216 1.21399 1.02229 0.95152 0.98763 1.21240 0.99185 0.93794 0.98437 1.21093 1.02900 1.00950 0.94600 0.91295 0.90225 0.91756 0.86260 0.91871 0.89329 0.91718 0.90658 0.81711 0.83536 0.82943 0.84060 0.86318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.09 9.52 71.98 0.69 -3.40 16 2 C 0.09 2.89 3.32 31.10 0.10 2.99 16 3 H 0.08 2.71 6.85 -2.39 -0.02 2.70 16 4 O -0.38 -12.27 11.35 -148.98 -1.69 -13.96 16 5 C 0.05 1.38 7.64 72.49 0.55 1.94 16 6 C -0.13 -4.36 5.17 31.61 0.16 -4.20 16 7 C -0.12 -4.51 2.24 -10.52 -0.02 -4.53 16 8 H 0.10 4.14 7.58 -2.39 -0.02 4.12 16 9 C 0.50 22.29 6.72 87.66 0.59 22.88 16 10 O -0.57 -26.15 11.85 -3.01 -0.04 -26.18 16 11 N -0.42 -19.97 2.26 -458.89 -1.04 -21.01 16 12 C -0.36 -18.05 7.80 84.02 0.66 -17.40 16 13 H 0.10 5.22 6.62 -2.91 -0.02 5.20 16 14 C 0.06 3.09 4.29 84.91 0.36 3.45 16 15 N -0.89 -47.06 13.96 21.65 0.30 -46.76 16 16 Si 0.91 42.82 24.18 68.60 1.66 44.48 16 17 H -0.24 -10.78 6.08 99.48 0.60 -10.18 16 18 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 19 H -0.28 -14.25 6.92 99.48 0.69 -13.56 16 20 C 0.13 5.82 4.40 38.22 0.17 5.99 16 21 C -0.20 -8.78 9.03 22.41 0.20 -8.58 16 22 C -0.11 -3.67 10.04 22.25 0.22 -3.45 16 23 C -0.16 -4.96 10.04 22.30 0.22 -4.74 16 24 C -0.11 -3.89 9.79 22.25 0.22 -3.67 16 25 C -0.17 -7.68 5.81 22.41 0.13 -7.55 16 26 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 27 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.12 2.65 8.14 -2.38 -0.02 2.63 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.09 2.90 8.08 -2.39 -0.02 2.88 16 32 H 0.06 2.33 7.71 -2.39 -0.02 2.32 16 33 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 34 H 0.17 7.45 4.59 -57.75 -0.27 7.18 16 35 H 0.15 4.00 8.06 -2.91 -0.02 3.97 16 36 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 37 H 0.14 4.20 8.06 -2.91 -0.02 4.17 16 38 H 0.12 5.65 5.71 -2.91 -0.02 5.64 16 Total: -1.00 -59.02 299.83 4.14 -54.88 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: 0.69 Total: 28.82 kcal Atomic # 6 Polarization: -24.52 SS G_CDS: 4.26 Total: -20.26 kcal Atomic # 7 Polarization: -67.03 SS G_CDS: -0.73 Total: -67.76 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -1.73 Total: -40.15 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 1.66 Total: 44.48 kcal Total: -59.02 4.14 -54.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092345152.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.717 kcal (2) G-P(sol) polarization free energy of solvation -59.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds