Wall clock time and date at job start Mon Mar 30 2020 02:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.86792 * 2 1 4 4 O 1.43745 * 109.87856 * 238.83507 * 2 1 3 5 5 C 1.44382 * 106.97543 * 267.09040 * 4 2 1 6 6 C 1.54992 * 103.48719 * 319.94100 * 5 4 2 7 7 C 1.54100 * 109.87493 * 121.00550 * 2 1 3 8 8 H 1.09000 * 110.48987 * 358.58602 * 7 2 1 9 9 C 1.50696 * 110.48514 * 236.06865 * 7 2 1 10 10 O 1.21288 * 120.00146 * 0.02562 * 9 7 2 11 11 N 1.34779 * 120.00008 * 180.02562 * 9 7 2 12 12 C 1.39245 * 119.99844 * 185.26453 * 11 9 7 13 13 C 1.39474 * 119.83680 * 34.65190 * 12 11 9 14 14 C 1.36370 * 120.16899 * 179.97438 * 13 12 11 15 15 C 1.40866 * 119.82982 * 0.02562 * 14 13 12 16 16 C 1.41155 * 120.16314 * 179.72764 * 15 14 13 17 17 H 1.07995 * 120.00167 * 332.25092 * 16 15 14 18 18 C 1.39904 * 119.99897 * 152.25385 * 16 15 14 19 19 N 1.30871 * 119.99953 * 163.99424 * 18 16 15 20 20 Si 1.86801 * 120.00140 * 343.99291 * 18 16 15 21 21 H 1.48499 * 109.46788 * 95.16546 * 20 18 16 22 22 H 1.48501 * 109.46977 * 215.16205 * 20 18 16 23 23 H 1.48500 * 109.47062 * 335.16592 * 20 18 16 24 24 C 1.40870 * 119.67361 * 359.97438 * 15 14 13 25 25 C 1.36374 * 119.82570 * 359.97438 * 24 15 14 26 26 H 1.08995 * 109.47149 * 298.99869 * 1 2 3 27 27 H 1.09004 * 109.47054 * 58.99781 * 1 2 3 28 28 H 1.08999 * 109.47085 * 178.99554 * 1 2 3 29 29 H 1.09003 * 110.61683 * 78.44259 * 5 4 2 30 30 H 1.08993 * 110.61421 * 201.27745 * 5 4 2 31 31 H 1.09000 * 110.90854 * 278.82073 * 6 5 4 32 32 H 1.09008 * 110.90515 * 155.22498 * 6 5 4 33 33 H 0.97000 * 120.00049 * 5.26603 * 11 9 7 34 34 H 1.07999 * 119.91231 * 0.02562 * 13 12 11 35 35 H 1.08004 * 120.08737 * 180.02562 * 14 13 12 36 36 H 0.97001 * 120.00232 * 180.02562 * 19 18 16 37 37 H 1.07997 * 120.08744 * 179.97438 * 24 15 14 38 38 H 1.08003 * 119.91630 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6996 -1.1567 5 6 2.2281 -2.0725 -0.7618 6 6 2.8324 -1.9515 0.6603 7 6 2.0540 -0.7465 1.2421 8 1 1.2237 -1.0885 1.8601 9 6 2.9743 0.1399 2.0410 10 8 3.2028 1.2708 1.6669 11 7 3.5436 -0.3240 3.1711 12 6 4.3053 0.5275 3.9672 13 6 3.9502 1.8713 4.0835 14 6 4.6911 2.7110 4.8616 15 6 5.8179 2.2182 5.5486 16 6 6.5931 3.0825 6.3514 17 1 6.6387 4.1368 6.1219 18 6 7.3024 2.5733 7.4445 19 7 8.2535 3.2835 7.9957 20 14 6.8920 0.8797 8.1174 21 1 7.8025 -0.1265 7.5143 22 1 7.0611 0.8789 9.5927 23 1 5.4862 0.5403 7.7800 24 6 6.1702 0.8598 5.4263 25 6 5.4190 0.0319 4.6452 26 1 -0.3633 0.4982 0.8988 27 1 -0.3633 0.5293 -0.8809 28 1 -0.3633 -1.0275 -0.0180 29 1 1.2813 -2.6118 -0.7320 30 1 2.9273 -2.5640 -1.4382 31 1 3.9003 -1.7383 0.6123 32 1 2.6432 -2.8541 1.2414 33 1 3.4226 -1.2510 3.4300 34 1 3.0859 2.2474 3.5565 35 1 4.4148 3.7513 4.9511 36 1 8.7456 2.9303 8.7534 37 1 7.0330 0.4750 5.9496 38 1 5.6881 -1.0097 4.5500 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094177443.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:40 Heat of formation + Delta-G solvation = -65.513133 kcal Electronic energy + Delta-G solvation = -20836.781927 eV Core-core repulsion = 17643.634201 eV Total energy + Delta-G solvation = -3193.147726 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.60323 -38.93978 -37.39587 -34.58156 -33.27255 -32.51507 -31.38784 -29.94460 -29.61473 -27.09635 -24.81160 -22.66993 -22.06847 -21.53534 -20.53221 -19.72270 -17.78386 -17.38081 -16.92313 -16.25722 -15.83631 -15.24100 -14.67405 -14.64368 -14.07070 -13.91628 -13.52731 -13.38203 -12.91518 -12.89902 -12.55729 -12.36970 -12.20945 -12.03094 -11.91627 -11.62193 -11.17039 -11.01268 -10.92591 -10.81807 -10.58976 -10.21965 -9.82122 -9.79561 -9.51173 -9.13690 -9.06169 -7.83519 -7.22081 -6.99582 -4.46753 2.30302 2.69238 2.94613 3.09084 3.19320 3.27992 3.47850 3.70327 3.93026 4.30078 4.47458 4.55249 4.66807 4.91069 4.94990 5.17646 5.22981 5.32587 5.36949 5.41416 5.46931 5.60407 5.76584 5.89449 5.93871 6.05152 6.09828 6.42780 6.66546 6.71575 6.75782 6.81778 7.14847 7.24603 7.44047 7.60853 7.80739 8.00679 8.08983 8.29616 8.52022 8.68445 8.75979 10.02603 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.041690 B = 0.003852 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.467341 B = 7266.739968 C = 7603.189883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.080 3.920 3 H 0.119 0.881 4 O -0.369 6.369 5 C 0.047 3.953 6 C -0.146 4.146 7 C -0.140 4.140 8 H 0.108 0.892 9 C 0.509 3.491 10 O -0.525 6.525 11 N -0.649 5.649 12 C -0.011 4.011 13 C -0.065 4.065 14 C -0.200 4.200 15 C 0.088 3.912 16 C -0.438 4.438 17 H 0.092 0.908 18 C 0.080 3.920 19 N -0.807 5.807 20 Si 0.917 3.083 21 H -0.272 1.272 22 H -0.293 1.293 23 H -0.243 1.243 24 C -0.230 4.230 25 C -0.086 4.086 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.396 0.604 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.286 0.714 37 H 0.102 0.898 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.740 -12.670 -9.418 19.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.022 3.978 3 H 0.137 0.863 4 O -0.287 6.287 5 C -0.030 4.030 6 C -0.184 4.184 7 C -0.162 4.162 8 H 0.126 0.874 9 C 0.295 3.705 10 O -0.402 6.402 11 N -0.292 5.292 12 C -0.103 4.103 13 C -0.085 4.085 14 C -0.220 4.220 15 C 0.085 3.915 16 C -0.467 4.467 17 H 0.110 0.890 18 C -0.139 4.139 19 N -0.431 5.431 20 Si 0.745 3.255 21 H -0.198 1.198 22 H -0.221 1.221 23 H -0.166 1.166 24 C -0.249 4.249 25 C -0.106 4.106 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.112 0.888 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.229 0.771 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.096 0.904 37 H 0.120 0.880 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.358 -11.653 -9.709 18.949 hybrid contribution -0.044 -1.344 0.833 1.582 sum -11.403 -12.997 -8.876 19.436 Atomic orbital electron populations 1.22275 0.95316 1.02160 1.02828 1.22805 0.93672 0.98562 0.82785 0.86300 1.88944 1.86127 1.20404 1.33270 1.23525 0.99685 0.84973 0.94817 1.23155 1.01237 0.97109 0.96927 1.22745 0.98841 0.96441 0.98184 0.87402 1.20191 0.81569 0.88107 0.80659 1.90693 1.61290 1.19743 1.68442 1.42940 1.50575 1.13305 1.22362 1.17083 0.97656 0.91301 1.04239 1.20340 0.99041 0.92203 0.96943 1.20670 0.97640 0.98922 1.04730 1.17777 0.90575 0.91562 0.91574 1.19526 1.20989 0.97440 1.08696 0.89037 1.26233 0.91886 0.99576 0.96182 1.69701 1.14973 1.38955 1.19437 0.86238 0.81949 0.81118 0.76221 1.19811 1.22061 1.16575 1.20547 1.02440 0.95260 1.06694 1.20101 0.93610 0.98017 0.98917 0.91381 0.91583 0.92546 0.92122 0.88827 0.89757 0.89430 0.77072 0.87604 0.87835 0.90363 0.88007 0.88664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 9.30 37.16 0.35 -1.27 16 2 C 0.08 0.98 3.70 -26.15 -0.10 0.88 16 3 H 0.12 1.79 6.44 -51.93 -0.33 1.45 16 4 O -0.37 -4.75 11.19 -35.23 -0.39 -5.14 16 5 C 0.05 0.43 7.66 38.21 0.29 0.72 16 6 C -0.15 -1.35 6.69 -24.73 -0.17 -1.51 16 7 C -0.14 -1.58 3.07 -90.25 -0.28 -1.86 16 8 H 0.11 0.96 7.70 -51.93 -0.40 0.56 16 9 C 0.51 8.13 6.73 -10.99 -0.07 8.06 16 10 O -0.53 -10.66 13.00 5.55 0.07 -10.59 16 11 N -0.65 -10.38 5.29 -9.74 -0.05 -10.43 16 12 C -0.01 -0.22 6.27 -83.57 -0.52 -0.74 16 13 C -0.07 -1.47 8.57 -39.79 -0.34 -1.81 16 14 C -0.20 -4.81 9.74 -39.26 -0.38 -5.19 16 15 C 0.09 2.26 5.18 -106.80 -0.55 1.70 16 16 C -0.44 -11.86 9.58 -37.85 -0.36 -12.23 16 17 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 18 C 0.08 2.09 5.44 -17.34 -0.09 1.99 16 19 N -0.81 -21.37 13.93 55.55 0.77 -20.60 16 20 Si 0.92 20.45 24.40 -169.99 -4.15 16.30 16 21 H -0.27 -5.85 6.70 56.52 0.38 -5.47 16 22 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.24 -5.48 6.67 56.52 0.38 -5.10 16 24 C -0.23 -5.47 6.99 -39.26 -0.27 -5.74 16 25 C -0.09 -1.82 9.90 -39.79 -0.39 -2.21 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.46 8.11 -51.93 -0.42 0.04 16 29 H 0.06 0.44 8.11 -51.93 -0.42 0.02 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.91 7.86 -51.93 -0.41 0.50 16 32 H 0.09 0.56 8.14 -51.92 -0.42 0.14 16 33 H 0.40 4.81 8.82 -40.82 -0.36 4.45 16 34 H 0.11 2.32 6.49 -52.49 -0.34 1.98 16 35 H 0.10 2.38 8.06 -52.48 -0.42 1.95 16 36 H 0.29 6.83 8.30 -40.82 -0.34 6.49 16 37 H 0.10 2.40 4.28 -52.49 -0.22 2.17 16 38 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16 LS Contribution 309.96 15.07 4.67 4.67 Total: -1.00 -30.55 309.96 -7.03 -37.58 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -5.05 Total: 7.41 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -2.90 Total: -19.21 kcal Atomic # 7 Polarization: -31.75 SS G_CDS: 0.72 Total: -31.03 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.32 Total: -15.73 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.15 Total: 16.30 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.55 -7.03 -37.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094177443.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.932 kcal (2) G-P(sol) polarization free energy of solvation -30.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds