Wall clock time and date at job start Mon Mar 30 2020 02:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.86792 * 2 1 4 4 O 1.43745 * 109.87856 * 238.83507 * 2 1 3 5 5 C 1.44382 * 106.97543 * 267.09040 * 4 2 1 6 6 C 1.54992 * 103.48719 * 319.94100 * 5 4 2 7 7 C 1.54100 * 109.87493 * 121.00550 * 2 1 3 8 8 H 1.09000 * 110.48987 * 358.58602 * 7 2 1 9 9 C 1.50696 * 110.48514 * 236.06865 * 7 2 1 10 10 O 1.21288 * 120.00146 * 0.02562 * 9 7 2 11 11 N 1.34779 * 120.00008 * 180.02562 * 9 7 2 12 12 C 1.39245 * 119.99844 * 185.26453 * 11 9 7 13 13 C 1.39474 * 119.83680 * 34.65190 * 12 11 9 14 14 C 1.36370 * 120.16899 * 179.97438 * 13 12 11 15 15 C 1.40866 * 119.82982 * 0.02562 * 14 13 12 16 16 C 1.41155 * 120.16314 * 179.72764 * 15 14 13 17 17 H 1.07995 * 120.00167 * 332.25092 * 16 15 14 18 18 C 1.39904 * 119.99897 * 152.25385 * 16 15 14 19 19 N 1.30871 * 119.99953 * 163.99424 * 18 16 15 20 20 Si 1.86801 * 120.00140 * 343.99291 * 18 16 15 21 21 H 1.48499 * 109.46788 * 95.16546 * 20 18 16 22 22 H 1.48501 * 109.46977 * 215.16205 * 20 18 16 23 23 H 1.48500 * 109.47062 * 335.16592 * 20 18 16 24 24 C 1.40870 * 119.67361 * 359.97438 * 15 14 13 25 25 C 1.36374 * 119.82570 * 359.97438 * 24 15 14 26 26 H 1.08995 * 109.47149 * 298.99869 * 1 2 3 27 27 H 1.09004 * 109.47054 * 58.99781 * 1 2 3 28 28 H 1.08999 * 109.47085 * 178.99554 * 1 2 3 29 29 H 1.09003 * 110.61683 * 78.44259 * 5 4 2 30 30 H 1.08993 * 110.61421 * 201.27745 * 5 4 2 31 31 H 1.09000 * 110.90854 * 278.82073 * 6 5 4 32 32 H 1.09008 * 110.90515 * 155.22498 * 6 5 4 33 33 H 0.97000 * 120.00049 * 5.26603 * 11 9 7 34 34 H 1.07999 * 119.91231 * 0.02562 * 13 12 11 35 35 H 1.08004 * 120.08737 * 180.02562 * 14 13 12 36 36 H 0.97001 * 120.00232 * 180.02562 * 19 18 16 37 37 H 1.07997 * 120.08744 * 179.97438 * 24 15 14 38 38 H 1.08003 * 119.91630 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6996 -1.1567 5 6 2.2281 -2.0725 -0.7618 6 6 2.8324 -1.9515 0.6603 7 6 2.0540 -0.7465 1.2421 8 1 1.2237 -1.0885 1.8601 9 6 2.9743 0.1399 2.0410 10 8 3.2028 1.2708 1.6669 11 7 3.5436 -0.3240 3.1711 12 6 4.3053 0.5275 3.9672 13 6 3.9502 1.8713 4.0835 14 6 4.6911 2.7110 4.8616 15 6 5.8179 2.2182 5.5486 16 6 6.5931 3.0825 6.3514 17 1 6.6387 4.1368 6.1219 18 6 7.3024 2.5733 7.4445 19 7 8.2535 3.2835 7.9957 20 14 6.8920 0.8797 8.1174 21 1 7.8025 -0.1265 7.5143 22 1 7.0611 0.8789 9.5927 23 1 5.4862 0.5403 7.7800 24 6 6.1702 0.8598 5.4263 25 6 5.4190 0.0319 4.6452 26 1 -0.3633 0.4982 0.8988 27 1 -0.3633 0.5293 -0.8809 28 1 -0.3633 -1.0275 -0.0180 29 1 1.2813 -2.6118 -0.7320 30 1 2.9273 -2.5640 -1.4382 31 1 3.9003 -1.7383 0.6123 32 1 2.6432 -2.8541 1.2414 33 1 3.4226 -1.2510 3.4300 34 1 3.0859 2.2474 3.5565 35 1 4.4148 3.7513 4.9511 36 1 8.7456 2.9303 8.7534 37 1 7.0330 0.4750 5.9496 38 1 5.6881 -1.0097 4.5500 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094177443.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:39 Heat of formation + Delta-G solvation = -86.557283 kcal Electronic energy + Delta-G solvation = -20837.694470 eV Core-core repulsion = 17643.634201 eV Total energy + Delta-G solvation = -3194.060269 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.77925 -40.22357 -38.98007 -36.22752 -34.99578 -33.55735 -32.17912 -31.76503 -31.30585 -28.08535 -26.45381 -24.11461 -23.24197 -22.74575 -22.10523 -20.96358 -19.46130 -18.81549 -18.34763 -17.25661 -17.05594 -16.80767 -16.02951 -15.81949 -15.62295 -15.26194 -14.90143 -14.67035 -14.30917 -14.26147 -14.13189 -13.81591 -13.67970 -13.01824 -12.85287 -12.75869 -12.61299 -12.43989 -12.33762 -12.02303 -11.89453 -11.81824 -11.61219 -11.14081 -10.90219 -10.69918 -10.54494 -9.64272 -8.99529 -8.91155 -6.45929 0.59482 0.84666 1.25893 1.39933 1.51211 1.67795 2.12947 2.20344 2.60812 2.91412 3.44753 3.49834 3.64312 3.80276 4.13845 4.19353 4.25355 4.27245 4.33108 4.44657 4.62801 4.64333 4.67432 4.84201 4.89097 4.91688 4.96288 5.05787 5.07906 5.17323 5.27175 5.34897 5.48003 5.67908 5.80072 5.89837 5.96812 6.21466 6.33955 6.62094 6.70969 6.77884 7.31863 8.17411 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.041690 B = 0.003852 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.467341 B = 7266.739968 C = 7603.189883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.074 3.926 3 H 0.080 0.920 4 O -0.398 6.398 5 C 0.041 3.959 6 C -0.141 4.141 7 C -0.129 4.129 8 H 0.145 0.855 9 C 0.508 3.492 10 O -0.573 6.573 11 N -0.640 5.640 12 C 0.016 3.984 13 C -0.077 4.077 14 C -0.215 4.215 15 C 0.068 3.932 16 C -0.481 4.481 17 H 0.051 0.949 18 C 0.041 3.959 19 N -0.851 5.851 20 Si 0.975 3.025 21 H -0.252 1.252 22 H -0.280 1.280 23 H -0.246 1.246 24 C -0.235 4.235 25 C -0.086 4.086 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.065 0.935 32 H 0.128 0.872 33 H 0.421 0.579 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.295 0.705 37 H 0.107 0.893 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.650 -17.448 -10.134 24.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.016 3.984 3 H 0.098 0.902 4 O -0.318 6.318 5 C -0.035 4.035 6 C -0.178 4.178 7 C -0.150 4.150 8 H 0.163 0.837 9 C 0.296 3.704 10 O -0.452 6.452 11 N -0.285 5.285 12 C -0.078 4.078 13 C -0.097 4.097 14 C -0.235 4.235 15 C 0.065 3.935 16 C -0.510 4.510 17 H 0.069 0.931 18 C -0.173 4.173 19 N -0.477 5.477 20 Si 0.798 3.202 21 H -0.178 1.178 22 H -0.207 1.207 23 H -0.169 1.169 24 C -0.255 4.255 25 C -0.106 4.106 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.122 0.878 31 H 0.084 0.916 32 H 0.147 0.853 33 H 0.259 0.741 34 H 0.126 0.874 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.124 0.876 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.282 -16.469 -10.441 23.594 hybrid contribution 0.403 0.120 0.787 0.892 sum -12.880 -16.349 -9.654 22.943 Atomic orbital electron populations 1.22214 0.93084 1.03670 1.02929 1.22749 0.95371 0.96892 0.83358 0.90247 1.88916 1.86488 1.22572 1.33825 1.23807 1.01413 0.83361 0.94913 1.23216 0.99736 0.97475 0.97410 1.22786 0.98863 0.95996 0.97369 0.83738 1.21100 0.80995 0.87943 0.80335 1.90698 1.62679 1.22263 1.69567 1.42877 1.49788 1.13971 1.21896 1.17248 0.97019 0.91056 1.02454 1.20473 0.99066 0.93332 0.96817 1.20781 0.98033 0.99249 1.05434 1.17884 0.90904 0.92699 0.91977 1.19474 1.24192 0.96076 1.11290 0.93057 1.26992 0.91335 1.03280 0.95699 1.69733 1.16336 1.40979 1.20666 0.85367 0.81559 0.76980 0.76300 1.17768 1.20711 1.16934 1.20718 1.03007 0.94617 1.07160 1.20489 0.92688 0.99949 0.97461 0.90920 0.91995 0.90196 0.89438 0.87767 0.91573 0.85329 0.74104 0.87367 0.88499 0.89445 0.87554 0.84062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.30 71.98 0.67 -1.97 16 2 C 0.07 1.69 3.70 30.97 0.11 1.80 16 3 H 0.08 2.43 6.44 -2.39 -0.02 2.41 16 4 O -0.40 -9.46 11.19 -148.98 -1.67 -11.13 16 5 C 0.04 0.58 7.66 72.66 0.56 1.13 16 6 C -0.14 -1.91 6.69 31.89 0.21 -1.70 16 7 C -0.13 -2.40 3.07 -10.55 -0.03 -2.44 16 8 H 0.14 1.72 7.70 -2.39 -0.02 1.70 16 9 C 0.51 14.91 6.73 87.66 0.59 15.50 16 10 O -0.57 -23.00 13.00 -3.06 -0.04 -23.04 16 11 N -0.64 -17.94 5.29 -303.10 -1.60 -19.54 16 12 C 0.02 0.61 6.27 38.56 0.24 0.85 16 13 C -0.08 -3.43 8.57 22.13 0.19 -3.24 16 14 C -0.22 -10.70 9.74 22.48 0.22 -10.48 16 15 C 0.07 3.57 5.18 -21.28 -0.11 3.46 16 16 C -0.48 -27.66 9.58 23.39 0.22 -27.44 16 17 H 0.05 3.21 8.06 -2.91 -0.02 3.18 16 18 C 0.04 2.21 5.44 85.24 0.46 2.68 16 19 N -0.85 -47.04 13.93 21.82 0.30 -46.73 16 20 Si 0.98 41.70 24.40 68.60 1.67 43.37 16 21 H -0.25 -9.94 6.70 99.48 0.67 -9.27 16 22 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 23 H -0.25 -10.53 6.67 99.48 0.66 -9.87 16 24 C -0.24 -10.87 6.99 22.48 0.16 -10.72 16 25 C -0.09 -3.32 9.90 22.14 0.22 -3.10 16 26 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.06 1.05 8.14 -2.38 -0.02 1.04 16 28 H 0.08 0.94 8.11 -2.39 -0.02 0.92 16 29 H 0.09 0.80 8.11 -2.39 -0.02 0.78 16 30 H 0.10 1.23 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.17 7.86 -2.39 -0.02 1.15 16 32 H 0.13 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.42 7.82 8.82 -92.71 -0.82 7.00 16 34 H 0.11 4.76 6.49 -2.91 -0.02 4.74 16 35 H 0.10 4.77 8.06 -2.91 -0.02 4.75 16 36 H 0.30 14.53 8.30 -92.71 -0.77 13.76 16 37 H 0.11 4.79 4.28 -2.91 -0.01 4.78 16 38 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -71.62 309.96 2.56 -69.06 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.18 Total: 23.67 kcal Atomic # 6 Polarization: -39.38 SS G_CDS: 3.72 Total: -35.66 kcal Atomic # 7 Polarization: -64.97 SS G_CDS: -1.30 Total: -66.27 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -1.71 Total: -34.16 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 1.67 Total: 43.37 kcal Total: -71.62 2.56 -69.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094177443.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.500 kcal (2) G-P(sol) polarization free energy of solvation -71.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds