Wall clock time and date at job start Mon Mar 30 2020 02:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46791 * 2 1 4 4 S 1.81408 * 109.46959 * 180.02562 * 3 2 1 5 5 O 1.42093 * 110.54604 * 68.36984 * 4 3 2 6 6 O 1.42107 * 110.53869 * 291.62116 * 4 3 2 7 7 N 1.65599 * 104.44927 * 179.97438 * 4 3 2 8 8 C 1.46506 * 119.99913 * 89.99600 * 7 4 3 9 9 C 1.50699 * 109.46928 * 95.00113 * 8 7 4 10 10 H 1.08003 * 119.99963 * 0.02562 * 9 8 7 11 11 C 1.37873 * 119.99865 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00518 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99987 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46922 * 90.00621 * 13 11 9 15 15 H 1.48500 * 109.47411 * 210.00442 * 13 11 9 16 16 H 1.48494 * 109.47378 * 330.00637 * 13 11 9 17 17 C 1.46498 * 120.00006 * 269.99834 * 7 4 3 18 18 C 1.54265 * 110.02979 * 237.90771 * 17 7 4 19 19 C 1.54968 * 104.16064 * 217.13319 * 18 17 7 20 20 C 1.54890 * 102.77512 * 37.88792 * 19 18 17 21 21 C 1.53870 * 110.03352 * 120.68852 * 17 7 4 22 22 H 1.08990 * 109.47077 * 60.00567 * 1 2 3 23 23 H 1.08998 * 109.46666 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47002 * 299.99880 * 1 2 3 25 25 H 1.09001 * 109.47396 * 239.99490 * 2 1 3 26 26 H 1.09002 * 109.47333 * 119.99811 * 2 1 3 27 27 H 1.08997 * 109.47249 * 60.00272 * 3 2 1 28 28 H 1.08998 * 109.47179 * 299.99507 * 3 2 1 29 29 H 1.09004 * 109.47073 * 214.99941 * 8 7 4 30 30 H 1.09000 * 109.47212 * 335.00023 * 8 7 4 31 31 H 0.96992 * 120.00316 * 179.97438 * 12 11 9 32 32 H 1.09001 * 110.01704 * 359.29724 * 17 7 4 33 33 H 1.08994 * 110.49157 * 335.78453 * 18 17 7 34 34 H 1.09003 * 110.48561 * 98.42565 * 18 17 7 35 35 H 1.08998 * 110.72049 * 279.58277 * 19 18 17 36 36 H 1.08998 * 110.92581 * 156.29501 * 19 18 17 37 37 H 1.08997 * 110.49215 * 203.40518 * 20 19 18 38 38 H 1.09007 * 110.60109 * 80.81904 * 20 19 18 39 39 H 1.08999 * 110.03154 * 238.56971 * 21 17 7 40 40 H 1.09000 * 110.03535 * 0.02562 * 21 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 16 3.8540 1.4426 -0.0008 5 8 4.3522 0.9523 -1.2379 6 8 4.3531 0.9521 1.2361 7 7 4.2672 3.0462 -0.0014 8 6 4.4504 3.7559 1.2671 9 6 5.9106 3.7500 1.6396 10 1 6.6302 3.2663 0.9957 11 6 6.3279 4.3629 2.8020 12 7 5.4518 4.9523 3.5859 13 14 8.1379 4.3549 3.2642 14 1 8.8010 5.5524 2.6883 15 1 8.2713 4.3784 4.7430 16 1 8.7801 3.1278 2.7286 17 6 4.4494 3.7551 -1.2704 18 6 5.8707 4.3504 -1.3437 19 6 5.6758 5.7100 -2.0613 20 6 4.3310 6.2139 -1.4810 21 6 3.4707 4.9392 -1.3580 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 4.1067 4.7849 1.1606 30 1 3.8742 3.2594 2.0478 31 1 5.7454 5.3832 4.4037 32 1 4.2865 3.0736 -2.1053 33 1 6.2730 4.5020 -0.3422 34 1 6.5264 3.7019 -1.9250 35 1 5.6027 5.5698 -3.1398 36 1 6.4844 6.3987 -1.8167 37 1 3.8640 6.9250 -2.1623 38 1 4.4821 6.6681 -0.5017 39 1 2.8334 4.8327 -2.2358 40 1 2.8604 4.9867 -0.4561 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098126774.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:20 Heat of formation + Delta-G solvation = -90.127413 kcal Electronic energy + Delta-G solvation = -20980.791302 eV Core-core repulsion = 17922.020173 eV Total energy + Delta-G solvation = -3058.771130 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.16795 -36.44248 -35.25522 -34.76220 -33.97912 -32.22749 -28.23701 -27.81179 -27.54750 -25.96108 -22.59519 -21.82962 -20.14876 -19.55294 -18.00000 -17.15930 -16.55795 -15.88837 -15.76638 -15.15674 -14.85637 -14.36798 -14.24966 -13.50033 -13.01149 -12.79071 -12.61150 -12.43708 -12.29069 -12.14904 -11.60690 -11.53622 -11.43157 -11.38392 -11.07220 -10.92831 -10.86930 -10.72823 -10.66408 -10.51692 -10.40104 -10.30973 -10.08873 -10.04340 -9.77398 -9.32363 -8.40431 -7.95184 -6.04170 -4.04982 0.87719 3.32609 3.38147 3.39834 3.46990 4.42080 4.46088 4.59160 4.74245 4.99511 5.09118 5.12990 5.16013 5.28299 5.37102 5.45476 5.57752 5.65565 5.78240 5.91264 5.93806 5.95328 6.07867 6.09614 6.11167 6.18587 6.21816 6.33839 6.41646 6.58834 6.79409 6.89256 7.25116 7.33016 7.46946 7.71346 7.94088 8.25273 8.95281 9.57508 11.04297 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.015757 B = 0.007813 C = 0.006158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.542849 B = 3583.013984 C = 4545.967395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C -0.643 4.643 4 S 2.600 3.400 5 O -0.976 6.976 6 O -0.938 6.938 7 N -0.980 5.980 8 C 0.256 3.744 9 C -0.518 4.518 10 H 0.065 0.935 11 C 0.062 3.938 12 N -0.896 5.896 13 Si 0.892 3.108 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.272 1.272 17 C 0.153 3.847 18 C -0.151 4.151 19 C -0.121 4.121 20 C -0.118 4.118 21 C -0.137 4.137 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.129 0.871 28 H 0.123 0.877 29 H 0.039 0.961 30 H 0.035 0.965 31 H 0.262 0.738 32 H 0.084 0.916 33 H 0.123 0.877 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.183 -2.138 -9.428 12.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.155 4.155 3 C -0.769 4.769 4 S 2.693 3.307 5 O -0.966 6.966 6 O -0.928 6.928 7 N -0.818 5.818 8 C 0.134 3.866 9 C -0.557 4.557 10 H 0.083 0.917 11 C -0.140 4.140 12 N -0.535 5.535 13 Si 0.720 3.280 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.197 1.197 17 C 0.046 3.954 18 C -0.189 4.189 19 C -0.159 4.159 20 C -0.156 4.156 21 C -0.176 4.176 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.148 0.852 28 H 0.142 0.858 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.141 0.859 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.632 -2.779 -9.228 12.293 hybrid contribution 0.249 0.504 0.374 0.675 sum -7.383 -2.276 -8.853 11.750 Atomic orbital electron populations 1.21710 0.94411 1.01795 1.02250 1.21223 0.98203 0.92793 1.03231 1.30858 1.30242 1.04795 1.11042 1.05240 0.77131 0.74139 0.74213 1.93507 1.77443 1.79579 1.46075 1.93627 1.76171 1.78681 1.44337 1.57574 1.82235 1.29028 1.13013 1.19031 0.97319 0.92898 0.77374 1.21471 0.93109 1.34835 1.06264 0.91716 1.24916 0.97746 0.95349 0.95993 1.69908 1.33707 1.36527 1.13342 0.86583 0.85296 0.78469 0.77666 1.20662 1.21185 1.19699 1.21319 0.95723 0.93357 0.84978 1.23144 0.96194 0.94841 1.04752 1.22422 0.97264 0.97569 0.98627 1.22269 0.95583 0.96636 1.01113 1.22567 0.98201 0.95350 1.01492 0.92497 0.92336 0.92274 0.90795 0.90494 0.85208 0.85828 0.94274 0.94688 0.92797 0.89796 0.85896 0.92587 0.92660 0.91961 0.92765 0.90992 0.92408 0.90729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.91 37.16 0.37 -1.07 16 2 C -0.12 -1.44 5.94 -26.73 -0.16 -1.60 16 3 C -0.64 -8.87 6.18 37.16 0.23 -8.65 16 4 S 2.60 49.38 5.36 -107.50 -0.58 48.80 16 5 O -0.98 -19.83 16.58 -57.54 -0.95 -20.78 16 6 O -0.94 -21.85 16.99 -57.54 -0.98 -22.83 16 7 N -0.98 -19.62 2.64 -107.38 -0.28 -19.90 16 8 C 0.26 6.09 4.49 -5.19 -0.02 6.07 16 9 C -0.52 -13.93 7.24 -34.44 -0.25 -14.18 16 10 H 0.06 1.76 6.94 -52.48 -0.36 1.40 16 11 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.90 -25.49 13.29 55.43 0.74 -24.76 16 13 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 16 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 17 C 0.15 2.70 3.24 -66.82 -0.22 2.48 16 18 C -0.15 -2.76 6.29 -25.03 -0.16 -2.92 16 19 C -0.12 -1.83 6.91 -24.70 -0.17 -2.00 16 20 C -0.12 -1.76 6.83 -25.07 -0.17 -1.93 16 21 C -0.14 -2.07 6.03 -25.61 -0.15 -2.22 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.13 1.72 8.14 -51.93 -0.42 1.29 16 28 H 0.12 1.44 8.14 -51.92 -0.42 1.02 16 29 H 0.04 0.94 6.80 -51.93 -0.35 0.59 16 30 H 0.04 0.89 7.61 -51.93 -0.40 0.50 16 31 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.08 1.38 6.90 -51.93 -0.36 1.03 16 33 H 0.12 2.66 4.41 -51.93 -0.23 2.43 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.07 1.17 6.88 -51.93 -0.36 0.81 16 LS Contribution 327.94 15.07 4.94 4.94 Total: -1.00 -31.79 327.94 -9.62 -41.41 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -6.69 Total: 0.96 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: -0.80 Total: -24.39 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 0.45 Total: -44.66 kcal Atomic # 8 Polarization: -41.68 SS G_CDS: -1.93 Total: -43.61 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 49.38 SS G_CDS: -0.58 Total: 48.80 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.79 -9.62 -41.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098126774.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.713 kcal (2) G-P(sol) polarization free energy of solvation -31.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds