Wall clock time and date at job start Mon Mar 30 2020 02:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46791 * 2 1 4 4 S 1.81408 * 109.46959 * 180.02562 * 3 2 1 5 5 O 1.42093 * 110.54604 * 68.36984 * 4 3 2 6 6 O 1.42107 * 110.53869 * 291.62116 * 4 3 2 7 7 N 1.65599 * 104.44927 * 179.97438 * 4 3 2 8 8 C 1.46506 * 119.99913 * 89.99600 * 7 4 3 9 9 C 1.50699 * 109.46928 * 95.00113 * 8 7 4 10 10 H 1.08003 * 119.99963 * 0.02562 * 9 8 7 11 11 C 1.37873 * 119.99865 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00518 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99987 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46922 * 90.00621 * 13 11 9 15 15 H 1.48500 * 109.47411 * 210.00442 * 13 11 9 16 16 H 1.48494 * 109.47378 * 330.00637 * 13 11 9 17 17 C 1.46498 * 120.00006 * 269.99834 * 7 4 3 18 18 C 1.54265 * 110.02979 * 237.90771 * 17 7 4 19 19 C 1.54968 * 104.16064 * 217.13319 * 18 17 7 20 20 C 1.54890 * 102.77512 * 37.88792 * 19 18 17 21 21 C 1.53870 * 110.03352 * 120.68852 * 17 7 4 22 22 H 1.08990 * 109.47077 * 60.00567 * 1 2 3 23 23 H 1.08998 * 109.46666 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47002 * 299.99880 * 1 2 3 25 25 H 1.09001 * 109.47396 * 239.99490 * 2 1 3 26 26 H 1.09002 * 109.47333 * 119.99811 * 2 1 3 27 27 H 1.08997 * 109.47249 * 60.00272 * 3 2 1 28 28 H 1.08998 * 109.47179 * 299.99507 * 3 2 1 29 29 H 1.09004 * 109.47073 * 214.99941 * 8 7 4 30 30 H 1.09000 * 109.47212 * 335.00023 * 8 7 4 31 31 H 0.96992 * 120.00316 * 179.97438 * 12 11 9 32 32 H 1.09001 * 110.01704 * 359.29724 * 17 7 4 33 33 H 1.08994 * 110.49157 * 335.78453 * 18 17 7 34 34 H 1.09003 * 110.48561 * 98.42565 * 18 17 7 35 35 H 1.08998 * 110.72049 * 279.58277 * 19 18 17 36 36 H 1.08998 * 110.92581 * 156.29501 * 19 18 17 37 37 H 1.08997 * 110.49215 * 203.40518 * 20 19 18 38 38 H 1.09007 * 110.60109 * 80.81904 * 20 19 18 39 39 H 1.08999 * 110.03154 * 238.56971 * 21 17 7 40 40 H 1.09000 * 110.03535 * 0.02562 * 21 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 16 3.8540 1.4426 -0.0008 5 8 4.3522 0.9523 -1.2379 6 8 4.3531 0.9521 1.2361 7 7 4.2672 3.0462 -0.0014 8 6 4.4504 3.7559 1.2671 9 6 5.9106 3.7500 1.6396 10 1 6.6302 3.2663 0.9957 11 6 6.3279 4.3629 2.8020 12 7 5.4518 4.9523 3.5859 13 14 8.1379 4.3549 3.2642 14 1 8.8010 5.5524 2.6883 15 1 8.2713 4.3784 4.7430 16 1 8.7801 3.1278 2.7286 17 6 4.4494 3.7551 -1.2704 18 6 5.8707 4.3504 -1.3437 19 6 5.6758 5.7100 -2.0613 20 6 4.3310 6.2139 -1.4810 21 6 3.4707 4.9392 -1.3580 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 4.1067 4.7849 1.1606 30 1 3.8742 3.2594 2.0478 31 1 5.7454 5.3832 4.4037 32 1 4.2865 3.0736 -2.1053 33 1 6.2730 4.5020 -0.3422 34 1 6.5264 3.7019 -1.9250 35 1 5.6027 5.5698 -3.1398 36 1 6.4844 6.3987 -1.8167 37 1 3.8640 6.9250 -2.1623 38 1 4.4821 6.6681 -0.5017 39 1 2.8334 4.8327 -2.2358 40 1 2.8604 4.9867 -0.4561 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000098126774.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:20 Heat of formation + Delta-G solvation = -111.083827 kcal Electronic energy + Delta-G solvation = -20981.700041 eV Core-core repulsion = 17922.020173 eV Total energy + Delta-G solvation = -3059.679868 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.56408 -38.05979 -36.86396 -35.79076 -35.64448 -34.13095 -29.71991 -29.36064 -28.56660 -27.55814 -24.48778 -22.83799 -21.41435 -20.94375 -19.54817 -18.71375 -18.51813 -17.33506 -17.26382 -16.57714 -16.14560 -16.10808 -15.61326 -14.63538 -14.47419 -14.40799 -13.89430 -13.79265 -13.58164 -13.41162 -13.33508 -13.11315 -13.01475 -12.88272 -12.67075 -12.46969 -12.32565 -12.21613 -12.03533 -11.84083 -11.82347 -11.73711 -11.57214 -11.40596 -11.26271 -11.02368 -10.51089 -9.59462 -8.14933 -6.20834 -0.58943 1.37442 1.39947 1.49824 1.86974 2.43085 3.03745 3.15006 3.28917 3.60048 3.79820 3.85212 3.89612 4.14774 4.21103 4.37819 4.43572 4.66169 4.66706 4.73478 4.78407 4.82275 4.84327 4.97228 5.05428 5.08473 5.09510 5.18239 5.27918 5.32478 5.33365 5.44228 5.56204 5.63797 5.75823 5.87193 6.12312 6.21417 6.83854 7.43606 8.92317 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.015757 B = 0.007813 C = 0.006158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.542849 B = 3583.013984 C = 4545.967395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.128 4.128 3 C -0.606 4.606 4 S 2.590 3.410 5 O -0.996 6.996 6 O -0.995 6.995 7 N -0.988 5.988 8 C 0.274 3.726 9 C -0.525 4.525 10 H 0.050 0.950 11 C 0.014 3.986 12 N -0.923 5.923 13 Si 0.944 3.056 14 H -0.268 1.268 15 H -0.281 1.281 16 H -0.279 1.279 17 C 0.143 3.857 18 C -0.161 4.161 19 C -0.113 4.113 20 C -0.117 4.117 21 C -0.132 4.132 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.060 0.940 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.141 0.859 28 H 0.158 0.842 29 H 0.035 0.965 30 H 0.015 0.985 31 H 0.264 0.736 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.083 0.917 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.043 0.957 39 H 0.095 0.905 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.981 -1.833 -11.304 15.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.168 4.168 3 C -0.739 4.739 4 S 2.689 3.311 5 O -0.986 6.986 6 O -0.986 6.986 7 N -0.824 5.824 8 C 0.151 3.849 9 C -0.564 4.564 10 H 0.069 0.931 11 C -0.185 4.185 12 N -0.564 5.564 13 Si 0.770 3.230 14 H -0.193 1.193 15 H -0.206 1.206 16 H -0.204 1.204 17 C 0.037 3.963 18 C -0.200 4.200 19 C -0.151 4.151 20 C -0.155 4.155 21 C -0.171 4.171 22 H 0.089 0.911 23 H 0.093 0.907 24 H 0.080 0.920 25 H 0.101 0.899 26 H 0.089 0.911 27 H 0.159 0.841 28 H 0.176 0.824 29 H 0.053 0.947 30 H 0.033 0.967 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.062 0.938 39 H 0.114 0.886 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.355 -2.460 -11.122 14.740 hybrid contribution 0.745 0.323 0.883 1.200 sum -8.610 -2.137 -10.240 13.548 Atomic orbital electron populations 1.21726 0.91907 1.03254 1.03091 1.21447 1.00326 0.91386 1.03592 1.30514 1.23063 1.06900 1.13406 1.05267 0.79697 0.73323 0.72785 1.93470 1.79511 1.79618 1.46025 1.93556 1.79106 1.79536 1.46377 1.57408 1.83615 1.28896 1.12520 1.18537 0.95120 0.92619 0.78648 1.21753 0.94672 1.33987 1.06002 0.93135 1.25599 1.01305 0.95431 0.96204 1.69985 1.35129 1.37522 1.13774 0.85765 0.81254 0.78461 0.77502 1.19291 1.20638 1.20397 1.21610 0.95957 0.94546 0.84148 1.23112 0.96843 0.97136 1.02922 1.22403 0.97476 0.95351 0.99860 1.22261 0.95641 0.97164 1.00403 1.22564 0.97808 0.93916 1.02814 0.91066 0.90716 0.92049 0.89888 0.91116 0.84109 0.82359 0.94738 0.96749 0.92672 0.88329 0.89804 0.92873 0.89843 0.92143 0.89560 0.93786 0.88648 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.91 71.98 0.71 -1.60 16 2 C -0.13 -2.86 5.94 30.59 0.18 -2.67 16 3 C -0.61 -15.20 6.18 71.98 0.44 -14.75 16 4 S 2.59 98.54 5.36 -56.49 -0.30 98.23 16 5 O -1.00 -40.22 16.58 -127.65 -2.12 -42.34 16 6 O -1.00 -48.19 16.99 -127.65 -2.17 -50.36 16 7 N -0.99 -39.84 2.64 -493.65 -1.31 -41.15 16 8 C 0.27 13.50 4.49 85.63 0.38 13.89 16 9 C -0.52 -29.36 7.24 25.60 0.19 -29.18 16 10 H 0.05 2.90 6.94 -2.91 -0.02 2.88 16 11 C 0.01 0.77 5.46 84.65 0.46 1.23 16 12 N -0.92 -53.86 13.29 21.45 0.28 -53.58 16 13 Si 0.94 45.30 29.54 68.60 2.03 47.33 16 14 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 15 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 16 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 17 C 0.14 4.91 3.24 45.71 0.15 5.06 16 18 C -0.16 -5.93 6.29 31.70 0.20 -5.73 16 19 C -0.11 -3.24 6.91 31.91 0.22 -3.02 16 20 C -0.12 -3.25 6.83 31.67 0.22 -3.03 16 21 C -0.13 -3.66 6.03 31.32 0.19 -3.47 16 22 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.14 3.38 8.14 -2.39 -0.02 3.36 16 28 H 0.16 2.97 8.14 -2.39 -0.02 2.95 16 29 H 0.03 1.72 6.80 -2.38 -0.02 1.70 16 30 H 0.01 0.77 7.61 -2.39 -0.02 0.75 16 31 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 32 H 0.10 3.07 6.90 -2.39 -0.02 3.05 16 33 H 0.08 3.79 4.41 -2.39 -0.01 3.77 16 34 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.09 1.85 8.14 -2.39 -0.02 1.84 16 38 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.07 1.96 6.88 -2.39 -0.02 1.94 16 Total: -1.00 -71.42 327.94 0.76 -70.65 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 1.00 Total: 14.48 kcal Atomic # 6 Polarization: -46.62 SS G_CDS: 3.35 Total: -43.28 kcal Atomic # 7 Polarization: -93.70 SS G_CDS: -1.02 Total: -94.72 kcal Atomic # 8 Polarization: -88.41 SS G_CDS: -4.28 Total: -92.70 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Atomic # 16 Polarization: 98.54 SS G_CDS: -0.30 Total: 98.23 kcal Total: -71.42 0.76 -70.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098126774.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.429 kcal (2) G-P(sol) polarization free energy of solvation -71.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds