Wall clock time and date at job start Mon Mar 30 2020 02:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.52789 * 2 1 4 4 C 1.53039 * 109.49576 * 239.91455 * 2 1 3 5 5 C 1.53042 * 109.53770 * 178.68508 * 4 2 1 6 6 H 1.09002 * 109.49678 * 301.41757 * 5 4 2 7 7 C 1.52998 * 109.50037 * 181.31813 * 5 4 2 8 8 C 1.53194 * 109.31169 * 61.36342 * 5 4 2 9 9 N 1.46927 * 108.77726 * 305.36481 * 8 5 4 10 10 S 1.65599 * 120.63350 * 233.58522 * 9 8 5 11 11 O 1.42105 * 104.27655 * 333.92859 * 10 9 8 12 12 O 1.42101 * 104.27764 * 206.07296 * 10 9 8 13 13 C 1.81395 * 104.44748 * 90.00165 * 10 9 8 14 14 C 1.52999 * 109.46986 * 180.02562 * 13 10 9 15 15 C 1.50700 * 109.47535 * 180.02562 * 14 13 10 16 16 H 1.08006 * 119.99840 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00463 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00062 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00103 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47395 * 89.99885 * 19 17 15 21 21 H 1.48504 * 109.47218 * 209.99622 * 19 17 15 22 22 H 1.48500 * 109.47369 * 329.99411 * 19 17 15 23 23 C 1.46929 * 118.73582 * 53.86011 * 9 8 5 24 24 H 1.08999 * 109.47726 * 180.08294 * 1 2 3 25 25 H 1.09004 * 109.47383 * 300.08397 * 1 2 3 26 26 H 1.09005 * 109.47188 * 60.08330 * 1 2 3 27 27 H 1.09000 * 109.46377 * 58.66771 * 4 2 1 28 28 H 1.08996 * 109.45212 * 298.69495 * 4 2 1 29 29 H 1.08998 * 109.46760 * 300.15859 * 7 5 4 30 30 H 1.08999 * 109.47028 * 60.16097 * 7 5 4 31 31 H 1.09001 * 109.47172 * 180.16696 * 7 5 4 32 32 H 1.09002 * 109.58871 * 185.57868 * 8 5 4 33 33 H 1.08994 * 109.70421 * 65.22476 * 8 5 4 34 34 H 1.09003 * 109.47393 * 299.99669 * 13 10 9 35 35 H 1.08994 * 109.47678 * 60.00285 * 13 10 9 36 36 H 1.09004 * 109.47080 * 299.99725 * 14 13 10 37 37 H 1.09005 * 109.47285 * 59.99790 * 14 13 10 38 38 H 0.96996 * 119.99792 * 180.02562 * 18 17 15 39 39 H 1.09002 * 109.58586 * 65.92547 * 23 9 8 40 40 H 1.09000 * 109.58637 * 186.35213 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0407 -0.7232 -1.2483 5 6 3.5708 -0.6952 -1.2660 6 1 3.9159 0.3387 -1.2540 7 6 4.0797 -1.3896 -2.5307 8 6 4.1052 -1.4268 -0.0306 9 7 3.5045 -0.8291 1.1697 10 16 4.4586 -0.2851 2.4091 11 8 5.6449 -1.0604 2.3045 12 8 3.6254 -0.3721 3.5569 13 6 4.7930 1.4491 1.9952 14 6 5.6772 2.0705 3.0782 15 6 5.9545 3.5114 2.7348 16 1 5.5417 3.9409 1.8339 17 6 6.7361 4.2812 3.5700 18 7 7.2392 3.7581 4.6668 19 14 7.0804 6.0670 3.1439 20 1 6.0293 6.9299 3.7407 21 1 8.4073 6.4579 3.6841 22 1 7.0783 6.2331 1.6682 23 6 2.0410 -0.7288 1.2521 24 1 -0.3634 -1.0276 0.0015 25 1 -0.3634 0.5151 0.8892 26 1 -0.3634 0.5126 -0.8908 27 1 1.6582 -0.2246 -2.1389 28 1 1.6967 -1.7573 -1.2349 29 1 3.7330 -2.4229 -2.5423 30 1 3.6992 -0.8687 -3.4093 31 1 5.1695 -1.3720 -2.5414 32 1 5.1895 -1.3247 0.0139 33 1 3.8395 -2.4824 -0.0852 34 1 5.3052 1.5012 1.0344 35 1 3.8523 1.9964 1.9355 36 1 5.1654 2.0185 4.0392 37 1 6.6180 1.5232 3.1375 38 1 7.7887 4.2997 5.2546 39 1 1.6083 -1.7282 1.2986 40 1 1.7629 -0.1661 2.1432 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104104709.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:07 Heat of formation + Delta-G solvation = -102.712745 kcal Electronic energy + Delta-G solvation = -20427.308104 eV Core-core repulsion = 17367.991233 eV Total energy + Delta-G solvation = -3059.316871 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.03452 -36.65370 -35.42653 -33.88724 -33.64658 -33.37959 -31.14430 -26.93091 -26.82289 -25.61406 -24.39662 -21.61157 -20.96467 -19.98480 -18.48295 -17.49876 -16.49595 -16.07576 -15.46550 -15.07338 -14.92007 -14.58786 -14.55524 -13.76008 -13.38674 -13.36010 -12.97644 -12.57951 -12.52631 -12.25577 -12.15837 -11.82055 -11.75135 -11.63869 -11.55535 -11.33450 -11.07979 -10.96258 -10.95269 -10.92048 -10.51238 -10.39734 -10.37746 -10.35213 -9.72776 -9.27899 -8.71322 -8.49988 -6.12020 -4.17567 0.78384 3.04298 3.26037 3.32252 3.34985 4.30494 4.39186 4.47350 4.51941 4.69231 4.78603 4.88329 5.01069 5.19095 5.23129 5.25986 5.44292 5.46119 5.49896 5.57019 5.66408 5.69322 5.70292 5.73485 5.79393 5.85026 5.95140 5.96012 6.05321 6.11862 6.31267 6.33529 6.51138 6.71419 7.30792 7.36954 7.80970 8.18274 8.85812 9.47152 10.99072 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.020404 B = 0.005065 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.945231 B = 5526.371061 C = 5752.829994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 H 0.078 0.922 4 C -0.104 4.104 5 C -0.112 4.112 6 H 0.078 0.922 7 C -0.145 4.145 8 C 0.127 3.873 9 N -1.007 6.007 10 S 2.590 3.410 11 O -0.965 6.965 12 O -0.965 6.965 13 C -0.589 4.589 14 C 0.028 3.972 15 C -0.519 4.519 16 H 0.061 0.939 17 C 0.058 3.942 18 N -0.891 5.891 19 Si 0.900 3.100 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.273 1.273 23 C 0.127 3.873 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.033 0.967 37 H 0.033 0.967 38 H 0.265 0.735 39 H 0.067 0.933 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.425 -9.319 -13.292 19.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.132 4.132 3 H 0.096 0.904 4 C -0.141 4.141 5 C -0.132 4.132 6 H 0.096 0.904 7 C -0.203 4.203 8 C 0.001 3.999 9 N -0.842 5.842 10 S 2.689 3.311 11 O -0.955 6.955 12 O -0.955 6.955 13 C -0.722 4.722 14 C -0.011 4.011 15 C -0.559 4.559 16 H 0.079 0.921 17 C -0.145 4.145 18 N -0.529 5.529 19 Si 0.727 3.273 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 C 0.001 3.999 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.036 -9.870 -12.375 19.297 hybrid contribution 0.127 1.556 -0.634 1.685 sum -10.909 -8.314 -13.009 18.904 Atomic orbital electron populations 1.21774 0.94636 1.01901 1.02049 1.21648 0.95718 1.00428 0.95377 0.90384 1.21578 0.94666 1.00606 0.97279 1.21570 0.96041 1.00775 0.94790 0.90401 1.21771 1.01371 1.00442 0.96758 1.21421 0.98245 0.96920 0.83276 1.57970 1.15765 1.76025 1.34438 1.05725 0.73443 0.78517 0.73457 1.93530 1.48027 1.68086 1.85885 1.93529 1.67457 1.87287 1.47257 1.30492 1.10313 1.20368 1.11032 1.18963 0.93623 0.97376 0.91146 1.21002 1.31916 0.94717 1.08261 0.92085 1.25066 0.95538 0.98933 0.94930 1.69957 1.33744 1.36723 1.12455 0.86475 0.77768 0.84405 0.78661 1.20458 1.20993 1.19780 1.21519 0.79121 1.00965 0.98272 0.92602 0.92251 0.92489 0.91904 0.91914 0.92600 0.92476 0.92247 0.89147 0.91482 0.86360 0.86357 0.94908 0.94895 0.92533 0.91448 0.89105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.20 37.16 0.34 -0.85 16 2 C -0.11 -1.10 2.89 -90.28 -0.26 -1.36 16 3 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.10 -0.92 4.45 -26.69 -0.12 -1.04 16 5 C -0.11 -1.10 2.87 -90.50 -0.26 -1.36 16 6 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 7 C -0.15 -1.19 9.20 37.16 0.34 -0.84 16 8 C 0.13 1.52 5.60 -3.71 -0.02 1.50 16 9 N -1.01 -14.13 3.21 -113.27 -0.36 -14.50 16 10 S 2.59 48.00 5.41 -107.50 -0.58 47.42 16 11 O -0.96 -20.40 16.73 -57.54 -0.96 -21.37 16 12 O -0.96 -20.40 16.71 -57.54 -0.96 -21.36 16 13 C -0.59 -11.47 6.12 37.16 0.23 -11.24 16 14 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 15 C -0.52 -14.45 9.11 -34.44 -0.31 -14.77 16 16 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 19 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 C 0.13 1.52 5.63 -3.49 -0.02 1.50 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 1.15 7.10 -51.93 -0.37 0.78 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 35 H 0.12 2.08 8.14 -51.93 -0.42 1.66 16 36 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.09 1.15 7.09 -51.93 -0.37 0.79 16 LS Contribution 332.21 15.07 5.01 5.01 Total: -1.00 -33.67 332.21 -9.51 -43.18 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -7.04 Total: -2.40 kcal Atomic # 6 Polarization: -26.02 SS G_CDS: -0.32 Total: -26.34 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 0.37 Total: -40.40 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -1.92 Total: -42.72 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 48.00 SS G_CDS: -0.58 Total: 47.42 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.67 -9.51 -43.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104104709.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.535 kcal (2) G-P(sol) polarization free energy of solvation -33.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds