Wall clock time and date at job start Mon Mar 30 2020 02:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.52789 * 2 1 4 4 C 1.53039 * 109.49576 * 239.91455 * 2 1 3 5 5 C 1.53042 * 109.53770 * 178.68508 * 4 2 1 6 6 H 1.09002 * 109.49678 * 301.41757 * 5 4 2 7 7 C 1.52998 * 109.50037 * 181.31813 * 5 4 2 8 8 C 1.53194 * 109.31169 * 61.36342 * 5 4 2 9 9 N 1.46927 * 108.77726 * 305.36481 * 8 5 4 10 10 S 1.65599 * 120.63350 * 233.58522 * 9 8 5 11 11 O 1.42105 * 104.27655 * 333.92859 * 10 9 8 12 12 O 1.42101 * 104.27764 * 206.07296 * 10 9 8 13 13 C 1.81395 * 104.44748 * 90.00165 * 10 9 8 14 14 C 1.52999 * 109.46986 * 180.02562 * 13 10 9 15 15 C 1.50700 * 109.47535 * 180.02562 * 14 13 10 16 16 H 1.08006 * 119.99840 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00463 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00062 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00103 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47395 * 89.99885 * 19 17 15 21 21 H 1.48504 * 109.47218 * 209.99622 * 19 17 15 22 22 H 1.48500 * 109.47369 * 329.99411 * 19 17 15 23 23 C 1.46929 * 118.73582 * 53.86011 * 9 8 5 24 24 H 1.08999 * 109.47726 * 180.08294 * 1 2 3 25 25 H 1.09004 * 109.47383 * 300.08397 * 1 2 3 26 26 H 1.09005 * 109.47188 * 60.08330 * 1 2 3 27 27 H 1.09000 * 109.46377 * 58.66771 * 4 2 1 28 28 H 1.08996 * 109.45212 * 298.69495 * 4 2 1 29 29 H 1.08998 * 109.46760 * 300.15859 * 7 5 4 30 30 H 1.08999 * 109.47028 * 60.16097 * 7 5 4 31 31 H 1.09001 * 109.47172 * 180.16696 * 7 5 4 32 32 H 1.09002 * 109.58871 * 185.57868 * 8 5 4 33 33 H 1.08994 * 109.70421 * 65.22476 * 8 5 4 34 34 H 1.09003 * 109.47393 * 299.99669 * 13 10 9 35 35 H 1.08994 * 109.47678 * 60.00285 * 13 10 9 36 36 H 1.09004 * 109.47080 * 299.99725 * 14 13 10 37 37 H 1.09005 * 109.47285 * 59.99790 * 14 13 10 38 38 H 0.96996 * 119.99792 * 180.02562 * 18 17 15 39 39 H 1.09002 * 109.58586 * 65.92547 * 23 9 8 40 40 H 1.09000 * 109.58637 * 186.35213 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0407 -0.7232 -1.2483 5 6 3.5708 -0.6952 -1.2660 6 1 3.9159 0.3387 -1.2540 7 6 4.0797 -1.3896 -2.5307 8 6 4.1052 -1.4268 -0.0306 9 7 3.5045 -0.8291 1.1697 10 16 4.4586 -0.2851 2.4091 11 8 5.6449 -1.0604 2.3045 12 8 3.6254 -0.3721 3.5569 13 6 4.7930 1.4491 1.9952 14 6 5.6772 2.0705 3.0782 15 6 5.9545 3.5114 2.7348 16 1 5.5417 3.9409 1.8339 17 6 6.7361 4.2812 3.5700 18 7 7.2392 3.7581 4.6668 19 14 7.0804 6.0670 3.1439 20 1 6.0293 6.9299 3.7407 21 1 8.4073 6.4579 3.6841 22 1 7.0783 6.2331 1.6682 23 6 2.0410 -0.7288 1.2521 24 1 -0.3634 -1.0276 0.0015 25 1 -0.3634 0.5151 0.8892 26 1 -0.3634 0.5126 -0.8908 27 1 1.6582 -0.2246 -2.1389 28 1 1.6967 -1.7573 -1.2349 29 1 3.7330 -2.4229 -2.5423 30 1 3.6992 -0.8687 -3.4093 31 1 5.1695 -1.3720 -2.5414 32 1 5.1895 -1.3247 0.0139 33 1 3.8395 -2.4824 -0.0852 34 1 5.3052 1.5012 1.0344 35 1 3.8523 1.9964 1.9355 36 1 5.1654 2.0185 4.0392 37 1 6.6180 1.5232 3.1375 38 1 7.7887 4.2997 5.2546 39 1 1.6083 -1.7282 1.2986 40 1 1.7629 -0.1661 2.1432 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104104709.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:06 Heat of formation + Delta-G solvation = -125.326196 kcal Electronic energy + Delta-G solvation = -20428.288697 eV Core-core repulsion = 17367.991233 eV Total energy + Delta-G solvation = -3060.297463 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.91655 -38.26628 -37.05075 -35.91742 -34.41941 -34.36424 -33.14378 -27.78260 -27.62876 -27.46142 -25.44495 -23.51792 -21.72930 -20.88040 -19.87876 -19.08806 -18.31124 -17.37760 -17.07815 -16.54865 -16.00450 -15.92004 -15.57157 -15.10484 -14.76214 -14.49117 -14.25075 -13.79699 -13.75117 -13.34566 -13.26694 -13.23800 -13.00654 -12.94664 -12.81143 -12.68828 -12.67800 -12.43079 -12.27491 -12.17015 -11.89156 -11.70449 -11.66823 -11.34898 -11.14875 -11.03244 -10.66285 -9.86735 -8.27431 -6.41947 -0.73273 1.39737 1.41817 1.52952 1.71513 2.36933 2.82458 3.05778 3.13815 3.58733 3.90663 3.92377 3.96923 4.01551 4.12709 4.17267 4.40036 4.51809 4.64679 4.69702 4.72233 4.82619 4.87032 4.91772 4.92625 5.05069 5.11475 5.19723 5.23672 5.24734 5.29259 5.35821 5.40042 5.51689 5.61150 5.66457 5.68561 6.04323 6.71405 7.28417 8.84988 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.020404 B = 0.005065 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.945231 B = 5526.371061 C = 5752.829994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 H 0.070 0.930 4 C -0.100 4.100 5 C -0.110 4.110 6 H 0.070 0.930 7 C -0.142 4.142 8 C 0.117 3.883 9 N -0.996 5.996 10 S 2.610 3.390 11 O -0.994 6.994 12 O -0.994 6.994 13 C -0.586 4.586 14 C 0.021 3.979 15 C -0.539 4.539 16 H 0.075 0.925 17 C -0.003 4.003 18 N -0.935 5.935 19 Si 0.975 3.025 20 H -0.270 1.270 21 H -0.282 1.282 22 H -0.258 1.258 23 C 0.117 3.883 24 H 0.065 0.935 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.005 0.995 37 H 0.005 0.995 38 H 0.268 0.732 39 H 0.084 0.916 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.887 -8.941 -15.853 22.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.130 4.130 3 H 0.088 0.912 4 C -0.137 4.137 5 C -0.130 4.130 6 H 0.088 0.912 7 C -0.200 4.200 8 C -0.007 4.007 9 N -0.834 5.834 10 S 2.709 3.291 11 O -0.985 6.985 12 O -0.985 6.985 13 C -0.718 4.718 14 C -0.018 4.018 15 C -0.578 4.578 16 H 0.093 0.907 17 C -0.202 4.202 18 N -0.574 5.574 19 Si 0.798 3.202 20 H -0.195 1.195 21 H -0.207 1.207 22 H -0.182 1.182 23 C -0.008 4.008 24 H 0.084 0.916 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.156 0.844 35 H 0.156 0.844 36 H 0.023 0.977 37 H 0.024 0.976 38 H 0.077 0.923 39 H 0.102 0.898 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.503 -9.487 -14.944 21.672 hybrid contribution 0.538 1.347 0.143 1.458 sum -11.965 -8.140 -14.801 20.700 Atomic orbital electron populations 1.21755 0.93102 1.02722 1.02475 1.21645 0.96928 0.99758 0.94645 0.91156 1.21577 0.93639 1.01298 0.97211 1.21568 0.96921 1.00184 0.94317 0.91178 1.21753 1.01189 1.00989 0.96104 1.21716 0.97788 0.98096 0.83129 1.57605 1.16352 1.75351 1.34111 1.04785 0.72942 0.77719 0.73671 1.93484 1.49917 1.68507 1.86558 1.93483 1.68020 1.87434 1.49522 1.30382 1.10171 1.21567 1.09636 1.18817 0.93376 0.97400 0.92159 1.21500 1.31868 0.95714 1.08743 0.90699 1.26126 0.95212 1.04178 0.94652 1.70105 1.34692 1.38817 1.13804 0.85301 0.77652 0.78068 0.79167 1.19504 1.20744 1.18151 1.21815 0.77476 1.02222 0.99239 0.91601 0.92625 0.91321 0.90361 0.90852 0.91596 0.91309 0.92623 0.90249 0.89824 0.84386 0.84366 0.97652 0.97637 0.92344 0.89782 0.90207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.20 71.98 0.66 -1.26 16 2 C -0.11 -1.89 2.89 -10.57 -0.03 -1.93 16 3 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 4 C -0.10 -1.45 4.45 30.62 0.14 -1.31 16 5 C -0.11 -1.90 2.87 -10.72 -0.03 -1.93 16 6 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 7 C -0.14 -1.92 9.20 71.98 0.66 -1.26 16 8 C 0.12 2.63 5.60 86.36 0.48 3.12 16 9 N -1.00 -26.98 3.21 -512.28 -1.65 -28.63 16 10 S 2.61 98.35 5.41 -56.49 -0.31 98.05 16 11 O -0.99 -43.09 16.73 -127.65 -2.14 -45.23 16 12 O -0.99 -43.07 16.71 -127.65 -2.13 -45.20 16 13 C -0.59 -23.01 6.12 71.98 0.44 -22.57 16 14 C 0.02 1.14 4.98 29.85 0.15 1.29 16 15 C -0.54 -30.31 9.11 25.60 0.23 -30.08 16 16 H 0.07 3.89 7.74 -2.91 -0.02 3.86 16 17 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 18 N -0.93 -57.45 13.29 21.45 0.28 -57.17 16 19 Si 0.97 43.52 29.54 68.60 2.03 45.54 16 20 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 21 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 22 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 23 C 0.12 2.63 5.63 86.51 0.49 3.11 16 24 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 27 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.78 16 32 H 0.08 1.97 7.10 -2.39 -0.02 1.95 16 33 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.14 4.80 8.14 -2.39 -0.02 4.78 16 35 H 0.14 4.80 8.14 -2.39 -0.02 4.78 16 36 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 37 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 38 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 39 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.08 1.98 7.09 -2.39 -0.02 1.96 16 Total: -1.00 -73.78 332.21 0.73 -73.05 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 0.98 Total: 12.13 kcal Atomic # 6 Polarization: -56.20 SS G_CDS: 3.65 Total: -52.55 kcal Atomic # 7 Polarization: -84.44 SS G_CDS: -1.36 Total: -85.80 kcal Atomic # 8 Polarization: -86.16 SS G_CDS: -4.27 Total: -90.43 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: 98.35 SS G_CDS: -0.31 Total: 98.05 kcal Total: -73.78 0.73 -73.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104104709.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.273 kcal (2) G-P(sol) polarization free energy of solvation -73.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds