Wall clock time and date at job start Mon Mar 30 2020 02:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.52995 * 117.50095 * 128.62334 * 4 2 1 6 6 C 1.52996 * 117.49906 * 59.99887 * 4 2 1 7 7 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 8 8 C 1.46502 * 119.99711 * 60.00297 * 7 2 1 9 9 S 1.65599 * 120.00127 * 239.99852 * 7 2 1 10 10 O 1.42101 * 104.27722 * 206.06817 * 9 7 2 11 11 O 1.42094 * 104.27850 * 333.93272 * 9 7 2 12 12 C 1.81403 * 104.44465 * 90.00174 * 9 7 2 13 13 C 1.53007 * 109.46823 * 180.02562 * 12 9 7 14 14 C 1.53000 * 109.46664 * 179.97438 * 13 12 9 15 15 C 1.50709 * 109.46755 * 180.02562 * 14 13 12 16 16 H 1.08007 * 119.99751 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00147 * 180.02562 * 15 14 13 18 18 N 1.31521 * 119.99620 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00214 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46989 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47169 * 119.99845 * 19 17 15 22 22 H 1.48505 * 109.46994 * 239.99941 * 19 17 15 23 23 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 26 26 H 1.08998 * 115.54608 * 274.32570 * 4 2 1 27 27 H 1.09000 * 117.49885 * 359.97438 * 5 4 2 28 28 H 1.08994 * 117.50251 * 145.02269 * 5 4 2 29 29 H 1.09000 * 117.49556 * 214.98390 * 6 4 2 30 30 H 1.08998 * 117.49880 * 359.97438 * 6 4 2 31 31 H 1.08993 * 109.47565 * 90.00263 * 8 7 2 32 32 H 1.09007 * 109.46761 * 210.00296 * 8 7 2 33 33 H 1.09002 * 109.46792 * 329.99948 * 8 7 2 34 34 H 1.08999 * 109.47276 * 299.99665 * 12 9 7 35 35 H 1.08995 * 109.47764 * 60.00026 * 12 9 7 36 36 H 1.08999 * 109.46886 * 299.99860 * 13 12 9 37 37 H 1.08993 * 109.47362 * 59.99845 * 13 12 9 38 38 H 1.08999 * 109.47475 * 299.99646 * 14 13 12 39 39 H 1.08995 * 109.47723 * 60.00104 * 14 13 12 40 40 H 0.97004 * 119.99507 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.0741 0.0052 -2.1117 6 6 1.6357 -0.1493 -2.6096 7 7 2.0184 -0.6906 1.1961 8 6 1.6645 -2.0933 1.4279 9 16 2.9705 0.1141 2.2861 10 8 3.7317 -0.9107 2.9103 11 8 3.6005 1.1302 1.5181 12 6 1.7964 0.8411 3.4625 13 6 2.5633 1.6210 4.5324 14 6 1.5730 2.2346 5.5241 15 6 2.3283 3.0033 6.5776 16 1 3.4069 3.0492 6.5434 17 6 1.6426 3.6472 7.5857 18 7 0.3293 3.5909 7.6276 19 14 2.5788 4.5994 8.8919 20 1 4.0362 4.5083 8.6215 21 1 2.1577 6.0231 8.8637 22 1 2.2869 4.0231 10.2291 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 2.1267 -1.8044 -1.1643 27 1 3.3909 0.9971 -1.7893 28 1 3.8415 -0.6000 -2.5943 29 1 1.4568 -0.8564 -3.4197 30 1 1.0060 0.7403 -2.6145 31 1 2.4158 -2.7377 0.9716 32 1 1.6239 -2.2853 2.5001 33 1 0.6905 -2.3002 0.9845 34 1 1.1233 1.5161 2.9339 35 1 1.2177 0.0478 3.9355 36 1 3.2367 0.9463 5.0610 37 1 3.1417 2.4143 4.0591 38 1 0.8999 2.9094 4.9952 39 1 0.9942 1.4416 5.9975 40 1 -0.1531 4.0436 8.3371 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104111881.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:18 Heat of formation + Delta-G solvation = -63.308970 kcal Electronic energy + Delta-G solvation = -19882.356414 eV Core-core repulsion = 16824.748219 eV Total energy + Delta-G solvation = -3057.608195 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.73092 -36.91671 -35.74802 -35.39505 -34.66327 -32.18406 -30.49001 -27.81015 -26.63666 -24.15742 -23.49444 -22.42196 -20.62400 -20.10393 -18.82276 -17.71955 -16.64290 -16.51545 -15.79844 -15.47928 -14.74444 -14.58650 -14.49765 -14.10862 -14.02226 -13.03412 -12.75174 -12.56994 -12.55732 -12.31100 -12.26075 -11.92151 -11.82944 -11.76615 -11.63273 -11.43679 -11.22824 -10.97786 -10.93695 -10.83074 -10.55593 -10.42220 -10.17132 -9.95720 -9.49719 -9.21334 -8.90877 -8.41434 -6.06165 -4.09092 0.44853 2.73178 3.29230 3.36729 3.41831 3.62006 4.03829 4.27454 4.41557 4.42807 4.63363 4.74757 4.84102 4.99630 5.11509 5.18098 5.21226 5.28133 5.30646 5.40695 5.44311 5.47964 5.57939 5.70787 5.75075 5.89078 5.90230 5.97830 5.99021 6.18834 6.26090 6.45227 6.54774 6.87097 7.56808 7.66519 7.92068 8.32572 8.97375 9.55703 11.05109 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.032898 B = 0.003791 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.924163 B = 7383.850305 C = 7509.338533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.173 3.827 3 H 0.101 0.899 4 C -0.160 4.160 5 C -0.178 4.178 6 C -0.175 4.175 7 N -1.000 6.000 8 C 0.094 3.906 9 S 2.596 3.404 10 O -0.959 6.959 11 O -0.959 6.959 12 C -0.609 4.609 13 C -0.106 4.106 14 C 0.030 3.970 15 C -0.525 4.525 16 H 0.059 0.941 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.894 3.106 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.107 0.893 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.064 -10.245 -18.581 21.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.067 3.933 3 H 0.119 0.881 4 C -0.180 4.180 5 C -0.215 4.215 6 C -0.213 4.213 7 N -0.837 5.837 8 C -0.052 4.052 9 S 2.694 3.306 10 O -0.950 6.950 11 O -0.949 6.949 12 C -0.741 4.741 13 C -0.145 4.145 14 C -0.008 4.008 15 C -0.564 4.564 16 H 0.077 0.923 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.722 3.278 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.126 0.874 27 H 0.119 0.881 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.258 -10.188 -18.523 21.142 hybrid contribution -0.360 0.530 0.958 1.153 sum -0.618 -9.658 -17.566 20.055 Atomic orbital electron populations 1.22178 0.94641 1.02776 1.02631 1.20452 0.94155 0.96050 0.82648 0.88069 1.22572 1.04490 0.99733 0.91195 1.23078 0.92317 1.02617 1.03499 1.22943 0.98510 1.03241 0.96611 1.57647 1.70566 1.20752 1.34692 1.21396 1.01016 0.80858 1.01881 1.05519 0.75888 0.74353 0.74884 1.93561 1.67429 1.56486 1.77500 1.93548 1.72989 1.60040 1.68358 1.30609 1.16386 1.12270 1.14848 1.21501 0.99353 0.98285 0.95381 1.19068 0.93568 0.95657 0.92503 1.21300 0.93463 1.31689 1.09921 0.92311 1.25026 0.94897 0.96497 0.98003 1.69974 1.06292 1.43780 1.33404 0.86496 0.80211 0.79643 0.81450 1.19582 1.20931 1.20942 0.91801 0.91843 0.91324 0.87445 0.88085 0.88930 0.88857 0.88563 0.92671 0.90973 0.90986 0.85541 0.85511 0.91636 0.91617 0.96123 0.96127 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 9.01 37.16 0.33 -1.03 16 2 C 0.17 1.81 2.81 -67.93 -0.19 1.62 16 3 H 0.10 1.16 6.63 -51.93 -0.34 0.82 16 4 C -0.16 -1.51 5.22 -90.62 -0.47 -1.98 16 5 C -0.18 -1.71 10.18 -26.73 -0.27 -1.98 16 6 C -0.18 -1.37 9.73 -26.73 -0.26 -1.63 16 7 N -1.00 -11.69 3.00 -114.61 -0.34 -12.04 16 8 C 0.09 0.89 9.17 59.85 0.55 1.44 16 9 S 2.60 39.78 5.37 -107.50 -0.58 39.20 16 10 O -0.96 -17.30 17.09 -57.54 -0.98 -18.29 16 11 O -0.96 -17.01 16.57 -57.54 -0.95 -17.96 16 12 C -0.61 -9.59 6.18 37.16 0.23 -9.36 16 13 C -0.11 -2.18 5.16 -26.73 -0.14 -2.31 16 14 C 0.03 0.77 4.97 -27.88 -0.14 0.64 16 15 C -0.53 -14.88 9.11 -34.44 -0.31 -15.20 16 16 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 19 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.47 6.66 -51.93 -0.35 0.12 16 25 H 0.07 0.49 7.29 -51.93 -0.38 0.11 16 26 H 0.11 0.96 7.43 -51.93 -0.39 0.57 16 27 H 0.10 1.07 8.05 -51.93 -0.42 0.65 16 28 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.10 0.69 7.61 -51.93 -0.39 0.30 16 31 H 0.05 0.50 8.07 -51.93 -0.42 0.09 16 32 H 0.07 0.67 7.79 -51.92 -0.40 0.27 16 33 H 0.07 0.51 6.43 -51.93 -0.33 0.18 16 34 H 0.13 1.78 8.14 -51.92 -0.42 1.36 16 35 H 0.13 1.78 8.14 -51.93 -0.42 1.36 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 338.45 15.07 5.10 5.10 Total: -1.00 -33.98 338.45 -9.58 -43.56 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -6.77 Total: -2.04 kcal Atomic # 6 Polarization: -27.50 SS G_CDS: -0.77 Total: -28.27 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.39 Total: -37.93 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -1.94 Total: -36.25 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 39.78 SS G_CDS: -0.58 Total: 39.20 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.98 -9.58 -43.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104111881.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.748 kcal (2) G-P(sol) polarization free energy of solvation -33.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds