Wall clock time and date at job start Mon Mar 30 2020 02:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.52995 * 117.50095 * 128.62334 * 4 2 1 6 6 C 1.52996 * 117.49906 * 59.99887 * 4 2 1 7 7 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 8 8 C 1.46502 * 119.99711 * 60.00297 * 7 2 1 9 9 S 1.65599 * 120.00127 * 239.99852 * 7 2 1 10 10 O 1.42101 * 104.27722 * 206.06817 * 9 7 2 11 11 O 1.42094 * 104.27850 * 333.93272 * 9 7 2 12 12 C 1.81403 * 104.44465 * 90.00174 * 9 7 2 13 13 C 1.53007 * 109.46823 * 180.02562 * 12 9 7 14 14 C 1.53000 * 109.46664 * 179.97438 * 13 12 9 15 15 C 1.50709 * 109.46755 * 180.02562 * 14 13 12 16 16 H 1.08007 * 119.99751 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00147 * 180.02562 * 15 14 13 18 18 N 1.31521 * 119.99620 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00214 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46989 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47169 * 119.99845 * 19 17 15 22 22 H 1.48505 * 109.46994 * 239.99941 * 19 17 15 23 23 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 26 26 H 1.08998 * 115.54608 * 274.32570 * 4 2 1 27 27 H 1.09000 * 117.49885 * 359.97438 * 5 4 2 28 28 H 1.08994 * 117.50251 * 145.02269 * 5 4 2 29 29 H 1.09000 * 117.49556 * 214.98390 * 6 4 2 30 30 H 1.08998 * 117.49880 * 359.97438 * 6 4 2 31 31 H 1.08993 * 109.47565 * 90.00263 * 8 7 2 32 32 H 1.09007 * 109.46761 * 210.00296 * 8 7 2 33 33 H 1.09002 * 109.46792 * 329.99948 * 8 7 2 34 34 H 1.08999 * 109.47276 * 299.99665 * 12 9 7 35 35 H 1.08995 * 109.47764 * 60.00026 * 12 9 7 36 36 H 1.08999 * 109.46886 * 299.99860 * 13 12 9 37 37 H 1.08993 * 109.47362 * 59.99845 * 13 12 9 38 38 H 1.08999 * 109.47475 * 299.99646 * 14 13 12 39 39 H 1.08995 * 109.47723 * 60.00104 * 14 13 12 40 40 H 0.97004 * 119.99507 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.0741 0.0052 -2.1117 6 6 1.6357 -0.1493 -2.6096 7 7 2.0184 -0.6906 1.1961 8 6 1.6645 -2.0933 1.4279 9 16 2.9705 0.1141 2.2861 10 8 3.7317 -0.9107 2.9103 11 8 3.6005 1.1302 1.5181 12 6 1.7964 0.8411 3.4625 13 6 2.5633 1.6210 4.5324 14 6 1.5730 2.2346 5.5241 15 6 2.3283 3.0033 6.5776 16 1 3.4069 3.0492 6.5434 17 6 1.6426 3.6472 7.5857 18 7 0.3293 3.5909 7.6276 19 14 2.5788 4.5994 8.8919 20 1 4.0362 4.5083 8.6215 21 1 2.1577 6.0231 8.8637 22 1 2.2869 4.0231 10.2291 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 2.1267 -1.8044 -1.1643 27 1 3.3909 0.9971 -1.7893 28 1 3.8415 -0.6000 -2.5943 29 1 1.4568 -0.8564 -3.4197 30 1 1.0060 0.7403 -2.6145 31 1 2.4158 -2.7377 0.9716 32 1 1.6239 -2.2853 2.5001 33 1 0.6905 -2.3002 0.9845 34 1 1.1233 1.5161 2.9339 35 1 1.2177 0.0478 3.9355 36 1 3.2367 0.9463 5.0610 37 1 3.1417 2.4143 4.0591 38 1 0.8999 2.9094 4.9952 39 1 0.9942 1.4416 5.9975 40 1 -0.1531 4.0436 8.3371 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104111881.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:17 Heat of formation + Delta-G solvation = -85.539534 kcal Electronic energy + Delta-G solvation = -19883.320404 eV Core-core repulsion = 16824.748219 eV Total energy + Delta-G solvation = -3058.572184 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.49880 -38.24366 -37.07124 -36.49075 -36.22105 -34.18053 -31.23335 -29.67733 -27.43392 -25.70436 -24.64344 -23.09725 -22.35819 -20.97781 -19.88133 -18.89447 -18.57283 -17.54324 -17.25815 -16.59296 -16.48242 -15.81514 -15.54217 -15.13858 -14.92259 -14.52082 -14.08728 -13.85062 -13.58769 -13.53010 -13.39119 -13.20179 -13.05366 -12.97873 -12.89285 -12.78439 -12.62366 -12.49225 -12.20472 -12.15344 -11.78587 -11.71674 -11.39346 -11.25334 -11.14568 -10.83979 -10.59332 -9.93053 -8.24101 -6.35221 -0.79258 1.39068 1.39660 1.53125 1.65122 2.38991 2.78629 2.91908 3.09362 3.12621 3.61117 3.70308 3.86009 3.94327 4.02844 4.18488 4.24281 4.35857 4.47059 4.54825 4.61794 4.72528 4.76085 4.83779 4.90557 4.91811 5.01561 5.03579 5.06543 5.20057 5.29541 5.33444 5.43324 5.48120 5.60199 5.69391 5.77640 6.18036 6.80222 7.34235 8.87614 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.032898 B = 0.003791 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.924163 B = 7383.850305 C = 7509.338533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.165 3.835 3 H 0.086 0.914 4 C -0.167 4.167 5 C -0.199 4.199 6 C -0.153 4.153 7 N -0.992 5.992 8 C 0.083 3.917 9 S 2.618 3.382 10 O -0.987 6.987 11 O -0.986 6.986 12 C -0.609 4.609 13 C -0.106 4.106 14 C 0.032 3.968 15 C -0.553 4.553 16 H 0.059 0.941 17 C 0.003 3.997 18 N -0.929 5.929 19 Si 0.964 3.036 20 H -0.264 1.264 21 H -0.276 1.276 22 H -0.276 1.276 23 H 0.059 0.941 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.116 0.884 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.111 0.889 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.003 0.997 39 H 0.003 0.997 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.568 -10.931 -19.500 22.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.060 3.940 3 H 0.104 0.896 4 C -0.187 4.187 5 C -0.236 4.236 6 C -0.191 4.191 7 N -0.830 5.830 8 C -0.061 4.061 9 S 2.715 3.285 10 O -0.978 6.978 11 O -0.976 6.976 12 C -0.739 4.739 13 C -0.145 4.145 14 C -0.007 4.007 15 C -0.591 4.591 16 H 0.078 0.922 17 C -0.195 4.195 18 N -0.569 5.569 19 Si 0.788 3.212 20 H -0.188 1.188 21 H -0.201 1.201 22 H -0.201 1.201 23 H 0.078 0.922 24 H 0.096 0.904 25 H 0.101 0.899 26 H 0.134 0.866 27 H 0.102 0.898 28 H 0.116 0.884 29 H 0.129 0.871 30 H 0.122 0.878 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.120 0.880 34 H 0.161 0.839 35 H 0.163 0.837 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.757 -10.872 -19.438 22.285 hybrid contribution -0.240 0.709 1.174 1.392 sum -0.997 -10.163 -18.264 20.925 Atomic orbital electron populations 1.22181 0.92673 1.03924 1.03183 1.20650 0.95685 0.95321 0.82386 0.89624 1.22593 1.04721 0.99981 0.91373 1.23116 0.93707 1.02036 1.04790 1.23031 0.96714 1.03487 0.95854 1.57353 1.70216 1.21462 1.34017 1.21680 1.02769 0.79226 1.02449 1.04621 0.75665 0.73612 0.74618 1.93519 1.68644 1.57203 1.78402 1.93510 1.74020 1.61243 1.68866 1.30563 1.16613 1.12706 1.14039 1.21315 0.98690 0.98739 0.95792 1.18961 0.93994 0.94757 0.92960 1.21765 0.93877 1.32366 1.11073 0.92249 1.25940 0.95846 0.97439 1.00318 1.70080 1.07817 1.44644 1.34384 0.85415 0.79032 0.78247 0.78480 1.18836 1.20128 1.20146 0.92198 0.90365 0.89906 0.86644 0.89811 0.88408 0.87075 0.87830 0.92253 0.90865 0.88016 0.83913 0.83731 0.91698 0.91709 0.97832 0.97815 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.01 71.98 0.65 -1.61 16 2 C 0.17 3.18 2.81 44.99 0.13 3.31 16 3 H 0.09 1.92 6.63 -2.39 -0.02 1.91 16 4 C -0.17 -2.82 5.22 -10.79 -0.06 -2.87 16 5 C -0.20 -3.65 10.18 30.59 0.31 -3.34 16 6 C -0.15 -2.02 9.73 30.59 0.30 -1.72 16 7 N -0.99 -21.73 3.00 -516.50 -1.55 -23.29 16 8 C 0.08 1.39 9.17 127.77 1.17 2.56 16 9 S 2.62 79.20 5.37 -56.49 -0.30 78.90 16 10 O -0.99 -35.34 17.09 -127.65 -2.18 -37.52 16 11 O -0.99 -35.20 16.57 -127.65 -2.12 -37.32 16 12 C -0.61 -18.88 6.18 71.98 0.44 -18.44 16 13 C -0.11 -4.42 5.16 30.60 0.16 -4.27 16 14 C 0.03 1.64 4.97 29.85 0.15 1.79 16 15 C -0.55 -31.76 9.11 25.60 0.23 -31.53 16 16 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 17 C 0.00 0.16 5.46 84.65 0.46 0.62 16 18 N -0.93 -55.82 13.29 21.45 0.28 -55.54 16 19 Si 0.96 44.39 29.54 68.60 2.03 46.41 16 20 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 22 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 23 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.08 0.87 6.66 -2.39 -0.02 0.86 16 25 H 0.08 0.94 7.29 -2.38 -0.02 0.92 16 26 H 0.12 1.77 7.43 -2.39 -0.02 1.75 16 27 H 0.08 1.80 8.05 -2.39 -0.02 1.78 16 28 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.10 1.22 7.61 -2.39 -0.02 1.20 16 31 H 0.06 0.96 8.07 -2.39 -0.02 0.94 16 32 H 0.07 1.23 7.79 -2.38 -0.02 1.21 16 33 H 0.10 1.10 6.43 -2.39 -0.02 1.09 16 34 H 0.14 3.92 8.14 -2.39 -0.02 3.90 16 35 H 0.14 3.93 8.14 -2.39 -0.02 3.91 16 36 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 37 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 39 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 40 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -73.15 338.45 1.10 -72.04 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 1.00 Total: 11.79 kcal Atomic # 6 Polarization: -59.43 SS G_CDS: 3.95 Total: -55.49 kcal Atomic # 7 Polarization: -77.56 SS G_CDS: -1.27 Total: -78.82 kcal Atomic # 8 Polarization: -70.54 SS G_CDS: -4.30 Total: -74.83 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: 79.20 SS G_CDS: -0.30 Total: 78.90 kcal Total: -73.15 1.10 -72.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104111881.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.496 kcal (2) G-P(sol) polarization free energy of solvation -73.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds