Wall clock time and date at job start Mon Mar 30 2020 02:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 C 1.52992 * 109.47482 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47106 * 60.00162 * 5 4 2 7 7 C 1.53002 * 109.47128 * 300.00123 * 6 5 4 8 8 C 1.52997 * 109.46978 * 59.99726 * 7 6 5 9 9 H 1.09000 * 109.47140 * 180.02562 * 8 7 6 10 10 N 1.46496 * 109.47278 * 60.00269 * 8 7 6 11 11 S 1.65601 * 120.00320 * 94.99801 * 10 8 7 12 12 O 1.42090 * 104.28194 * 181.07425 * 11 10 8 13 13 O 1.42105 * 104.27546 * 308.93268 * 11 10 8 14 14 C 1.81399 * 104.44748 * 64.99940 * 11 10 8 15 15 C 1.53008 * 109.46937 * 180.02562 * 14 11 10 16 16 C 1.50700 * 109.46705 * 180.02562 * 15 14 11 17 17 H 1.07991 * 120.00774 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99665 * 179.97438 * 16 15 14 19 19 N 1.31509 * 119.99885 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00019 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46664 * 90.00353 * 20 18 16 22 22 H 1.48495 * 109.47082 * 210.00181 * 20 18 16 23 23 H 1.48495 * 109.47235 * 330.00684 * 20 18 16 24 24 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 25 25 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 26 26 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 300.00319 * 4 2 1 28 28 H 1.08998 * 109.47533 * 59.99948 * 4 2 1 29 29 H 1.09002 * 109.47103 * 300.00247 * 5 4 2 30 30 H 1.08996 * 109.47747 * 179.97438 * 5 4 2 31 31 H 1.08996 * 109.47407 * 180.02562 * 6 5 4 32 32 H 1.09002 * 109.47596 * 60.00070 * 6 5 4 33 33 H 1.09002 * 109.47097 * 299.99925 * 7 6 5 34 34 H 1.08998 * 109.47844 * 180.02562 * 7 6 5 35 35 H 0.97001 * 120.00007 * 275.00164 * 10 8 7 36 36 H 1.09000 * 109.47627 * 300.00207 * 14 11 10 37 37 H 1.09004 * 109.47014 * 60.00605 * 14 11 10 38 38 H 1.08999 * 109.47293 * 299.99984 * 15 14 11 39 39 H 1.08995 * 109.46759 * 60.00370 * 15 14 11 40 40 H 0.97004 * 120.00231 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5699 -0.7219 -1.2490 6 6 4.0794 -1.4435 0.0003 7 6 3.5695 -0.7223 1.2495 8 6 2.0395 -0.7216 1.2492 9 1 1.6762 -0.2074 2.1390 10 7 1.5506 -2.1026 1.2490 11 16 1.1562 -2.8417 2.6774 12 8 0.7557 -4.1505 2.2960 13 8 2.2932 -2.6353 3.5044 14 6 -0.2626 -1.8975 3.2988 15 6 -0.7252 -2.4900 4.6315 16 6 -1.9043 -1.7060 5.1474 17 1 -2.2859 -0.8693 4.5813 18 6 -2.4967 -2.0577 6.3418 19 7 -2.0324 -3.0770 7.0310 20 14 -3.9578 -1.0855 6.9817 21 1 -5.2150 -1.6855 6.4672 22 1 -3.9638 -1.1206 8.4662 23 1 -3.8561 0.3222 6.5202 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.6766 -1.7489 -1.2492 28 1 1.6767 -0.2075 -2.1392 29 1 3.9336 0.3056 -1.2488 30 1 3.9333 -1.2361 -2.1387 31 1 5.1694 -1.4436 0.0007 32 1 3.7157 -2.4711 0.0001 33 1 3.9333 0.3053 1.2498 34 1 3.9328 -1.2360 2.1396 35 1 1.4579 -2.5841 0.4120 36 1 0.0291 -0.8576 3.4457 37 1 -1.0772 -1.9479 2.5762 38 1 -1.0169 -3.5300 4.4851 39 1 0.0894 -2.4393 5.3539 40 1 -2.4493 -3.3247 7.8711 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111324646.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:22 Heat of formation + Delta-G solvation = -110.557921 kcal Electronic energy + Delta-G solvation = -20509.116889 eV Core-core repulsion = 17449.459826 eV Total energy + Delta-G solvation = -3059.657063 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.48052 -36.51207 -35.38193 -33.89032 -33.56264 -32.52396 -31.14534 -29.51763 -26.22986 -25.58928 -22.71571 -21.74530 -21.36693 -19.86038 -18.58061 -17.52675 -16.60706 -15.90301 -15.46443 -15.16597 -14.85987 -14.68721 -14.53178 -14.09963 -13.53263 -13.38272 -13.02489 -12.51690 -12.40702 -12.06981 -11.94543 -11.77825 -11.73728 -11.53251 -11.44634 -11.24565 -11.07749 -10.95249 -10.93713 -10.64835 -10.57575 -10.38843 -10.37244 -10.04506 -9.74338 -9.40015 -8.96709 -8.49810 -6.11871 -4.17361 0.84941 3.20875 3.26190 3.32461 3.35057 4.26995 4.38458 4.49799 4.56511 4.64353 4.80896 4.98323 5.08686 5.16533 5.23486 5.33742 5.35463 5.43898 5.45028 5.60773 5.64957 5.69990 5.74579 5.84221 5.90571 5.94396 6.01419 6.09253 6.19465 6.23196 6.34177 6.41778 6.51425 7.18648 7.31357 7.37752 7.81112 8.18417 8.86084 9.47367 10.99207 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.028256 B = 0.004829 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.689157 B = 5796.766817 C = 6309.466733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.095 4.095 3 H 0.080 0.920 4 C -0.115 4.115 5 C -0.120 4.120 6 C -0.118 4.118 7 C -0.139 4.139 8 C 0.160 3.840 9 H 0.085 0.915 10 N -1.118 6.118 11 S 2.591 3.409 12 O -0.971 6.971 13 O -0.966 6.966 14 C -0.590 4.590 15 C 0.028 3.972 16 C -0.520 4.520 17 H 0.061 0.939 18 C 0.058 3.942 19 N -0.891 5.891 20 Si 0.899 3.101 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.273 1.273 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.410 0.590 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.032 0.968 39 H 0.033 0.967 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.852 7.071 -16.527 20.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.115 4.115 3 H 0.099 0.901 4 C -0.152 4.152 5 C -0.157 4.157 6 C -0.155 4.155 7 C -0.178 4.178 8 C 0.052 3.948 9 H 0.103 0.897 10 N -0.876 5.876 11 S 2.688 3.312 12 O -0.961 6.961 13 O -0.955 6.955 14 C -0.724 4.724 15 C -0.011 4.011 16 C -0.559 4.559 17 H 0.079 0.921 18 C -0.145 4.145 19 N -0.529 5.529 20 Si 0.727 3.273 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.245 0.755 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.335 6.303 -15.838 19.435 hybrid contribution -1.326 0.808 -0.040 1.553 sum 8.009 7.110 -15.878 19.153 Atomic orbital electron populations 1.21886 0.94635 1.02567 1.01982 1.21393 0.96135 0.99521 0.94469 0.90142 1.21580 0.95549 1.00814 0.97297 1.21555 0.95601 1.00668 0.97900 1.21476 0.99959 0.99903 0.94211 1.22059 0.95214 1.01161 0.99338 1.20728 0.93908 0.81517 0.98651 0.89722 1.55888 1.82424 1.23703 1.25590 1.05576 0.77215 0.75044 0.73334 1.93545 1.84720 1.36239 1.81601 1.93539 1.47924 1.86304 1.67779 1.30463 1.16985 1.13522 1.11390 1.18951 0.98156 0.96921 0.87039 1.21001 1.13941 1.15044 1.05921 0.92070 1.25065 0.97506 0.95227 0.96662 1.69954 1.41058 1.26816 1.15038 0.86479 0.82509 0.80261 0.78090 1.20482 1.21012 1.19773 0.92097 0.92699 0.92084 0.91836 0.91920 0.92079 0.92283 0.92209 0.91738 0.91292 0.90007 0.75518 0.86437 0.86156 0.94931 0.94870 0.92541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.03 37.16 0.34 -1.10 16 2 C -0.10 -0.85 2.54 -90.62 -0.23 -1.08 16 3 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.11 -0.94 5.02 -26.74 -0.13 -1.07 16 5 C -0.12 -0.97 5.92 -26.73 -0.16 -1.12 16 6 C -0.12 -1.15 5.77 -26.73 -0.15 -1.30 16 7 C -0.14 -1.51 5.64 -26.73 -0.15 -1.66 16 8 C 0.16 1.78 2.33 -67.93 -0.16 1.62 16 9 H 0.08 0.95 7.15 -51.93 -0.37 0.57 16 10 N -1.12 -14.24 3.86 -4.89 -0.02 -14.25 16 11 S 2.59 45.95 5.38 -107.50 -0.58 45.37 16 12 O -0.97 -20.24 18.08 -57.54 -1.04 -21.28 16 13 O -0.97 -19.74 17.11 -57.54 -0.98 -20.72 16 14 C -0.59 -11.15 5.90 37.16 0.22 -10.93 16 15 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 16 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 17 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 20 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.60 7.60 -51.93 -0.39 0.20 16 27 H 0.06 0.54 6.50 -51.93 -0.34 0.20 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.68 7.45 -51.93 -0.39 0.30 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.08 1.08 7.43 -51.93 -0.39 0.69 16 35 H 0.41 4.54 6.78 -34.47 -0.23 4.31 16 36 H 0.12 1.97 7.44 -51.92 -0.39 1.58 16 37 H 0.12 2.05 8.14 -51.92 -0.42 1.63 16 38 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 326.23 15.07 4.92 4.92 Total: -1.00 -33.78 326.23 -9.66 -43.43 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.69 Total: 1.36 kcal Atomic # 6 Polarization: -28.19 SS G_CDS: -0.98 Total: -29.17 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 0.72 Total: -40.05 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -2.02 Total: -42.01 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 45.95 SS G_CDS: -0.58 Total: 45.37 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.78 -9.66 -43.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111324646.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.124 kcal (2) G-P(sol) polarization free energy of solvation -33.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds