Wall clock time and date at job start Mon Mar 30 2020 02:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 C 1.52992 * 109.47482 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47106 * 60.00162 * 5 4 2 7 7 C 1.53002 * 109.47128 * 300.00123 * 6 5 4 8 8 C 1.52997 * 109.46978 * 59.99726 * 7 6 5 9 9 H 1.09000 * 109.47140 * 180.02562 * 8 7 6 10 10 N 1.46496 * 109.47278 * 60.00269 * 8 7 6 11 11 S 1.65601 * 120.00320 * 94.99801 * 10 8 7 12 12 O 1.42090 * 104.28194 * 181.07425 * 11 10 8 13 13 O 1.42105 * 104.27546 * 308.93268 * 11 10 8 14 14 C 1.81399 * 104.44748 * 64.99940 * 11 10 8 15 15 C 1.53008 * 109.46937 * 180.02562 * 14 11 10 16 16 C 1.50700 * 109.46705 * 180.02562 * 15 14 11 17 17 H 1.07991 * 120.00774 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99665 * 179.97438 * 16 15 14 19 19 N 1.31509 * 119.99885 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00019 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46664 * 90.00353 * 20 18 16 22 22 H 1.48495 * 109.47082 * 210.00181 * 20 18 16 23 23 H 1.48495 * 109.47235 * 330.00684 * 20 18 16 24 24 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 25 25 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 26 26 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 300.00319 * 4 2 1 28 28 H 1.08998 * 109.47533 * 59.99948 * 4 2 1 29 29 H 1.09002 * 109.47103 * 300.00247 * 5 4 2 30 30 H 1.08996 * 109.47747 * 179.97438 * 5 4 2 31 31 H 1.08996 * 109.47407 * 180.02562 * 6 5 4 32 32 H 1.09002 * 109.47596 * 60.00070 * 6 5 4 33 33 H 1.09002 * 109.47097 * 299.99925 * 7 6 5 34 34 H 1.08998 * 109.47844 * 180.02562 * 7 6 5 35 35 H 0.97001 * 120.00007 * 275.00164 * 10 8 7 36 36 H 1.09000 * 109.47627 * 300.00207 * 14 11 10 37 37 H 1.09004 * 109.47014 * 60.00605 * 14 11 10 38 38 H 1.08999 * 109.47293 * 299.99984 * 15 14 11 39 39 H 1.08995 * 109.46759 * 60.00370 * 15 14 11 40 40 H 0.97004 * 120.00231 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5699 -0.7219 -1.2490 6 6 4.0794 -1.4435 0.0003 7 6 3.5695 -0.7223 1.2495 8 6 2.0395 -0.7216 1.2492 9 1 1.6762 -0.2074 2.1390 10 7 1.5506 -2.1026 1.2490 11 16 1.1562 -2.8417 2.6774 12 8 0.7557 -4.1505 2.2960 13 8 2.2932 -2.6353 3.5044 14 6 -0.2626 -1.8975 3.2988 15 6 -0.7252 -2.4900 4.6315 16 6 -1.9043 -1.7060 5.1474 17 1 -2.2859 -0.8693 4.5813 18 6 -2.4967 -2.0577 6.3418 19 7 -2.0324 -3.0770 7.0310 20 14 -3.9578 -1.0855 6.9817 21 1 -5.2150 -1.6855 6.4672 22 1 -3.9638 -1.1206 8.4662 23 1 -3.8561 0.3222 6.5202 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.6766 -1.7489 -1.2492 28 1 1.6767 -0.2075 -2.1392 29 1 3.9336 0.3056 -1.2488 30 1 3.9333 -1.2361 -2.1387 31 1 5.1694 -1.4436 0.0007 32 1 3.7157 -2.4711 0.0001 33 1 3.9333 0.3053 1.2498 34 1 3.9328 -1.2360 2.1396 35 1 1.4579 -2.5841 0.4120 36 1 0.0291 -0.8576 3.4457 37 1 -1.0772 -1.9479 2.5762 38 1 -1.0169 -3.5300 4.4851 39 1 0.0894 -2.4393 5.3539 40 1 -2.4493 -3.3247 7.8711 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111324646.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:21 Heat of formation + Delta-G solvation = -133.983879 kcal Electronic energy + Delta-G solvation = -20510.132715 eV Core-core repulsion = 17449.459826 eV Total energy + Delta-G solvation = -3060.672889 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.29698 -38.09921 -36.97327 -35.89244 -34.49535 -33.32325 -33.08137 -30.37991 -27.59401 -26.97469 -23.67440 -23.41804 -22.18731 -20.89472 -19.77517 -19.08524 -18.36342 -17.15058 -17.02487 -16.53420 -16.15398 -16.01025 -15.56276 -15.12276 -14.83315 -14.47089 -14.27003 -13.88949 -13.71330 -13.33698 -13.18012 -13.07306 -12.95056 -12.82664 -12.79172 -12.75253 -12.55918 -12.23331 -12.20502 -12.10920 -11.76686 -11.67706 -11.40362 -11.32718 -11.03767 -10.80697 -10.64260 -10.20085 -8.25532 -6.39566 -0.63892 1.41201 1.43050 1.54139 1.90206 2.38453 2.83310 3.08079 3.30069 3.70461 3.87796 3.89274 4.02940 4.11267 4.26666 4.32626 4.37620 4.60865 4.62320 4.70478 4.72883 4.77722 4.89131 4.94875 5.10074 5.19222 5.24647 5.27826 5.28119 5.28933 5.38256 5.45421 5.50487 5.55264 5.67388 5.68952 6.06669 6.19690 6.74252 7.30732 8.86879 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.028256 B = 0.004829 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.689157 B = 5796.766817 C = 6309.466733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.087 4.087 3 H 0.099 0.901 4 C -0.116 4.116 5 C -0.115 4.115 6 C -0.120 4.120 7 C -0.140 4.140 8 C 0.148 3.852 9 H 0.085 0.915 10 N -1.098 6.098 11 S 2.616 3.384 12 O -1.004 7.004 13 O -0.995 6.995 14 C -0.587 4.587 15 C 0.021 3.979 16 C -0.538 4.538 17 H 0.077 0.923 18 C -0.004 4.004 19 N -0.935 5.935 20 Si 0.974 3.026 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.257 1.257 24 H 0.055 0.945 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.052 0.948 35 H 0.421 0.579 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.004 0.996 39 H 0.006 0.994 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.356 9.391 -18.468 22.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.107 4.107 3 H 0.117 0.883 4 C -0.153 4.153 5 C -0.152 4.152 6 C -0.158 4.158 7 C -0.180 4.180 8 C 0.041 3.959 9 H 0.103 0.897 10 N -0.860 5.860 11 S 2.712 3.288 12 O -0.994 6.994 13 O -0.984 6.984 14 C -0.719 4.719 15 C -0.018 4.018 16 C -0.576 4.576 17 H 0.095 0.905 18 C -0.202 4.202 19 N -0.575 5.575 20 Si 0.797 3.203 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.180 1.180 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.108 0.892 34 H 0.071 0.929 35 H 0.259 0.741 36 H 0.159 0.841 37 H 0.160 0.840 38 H 0.022 0.978 39 H 0.024 0.976 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.836 8.627 -17.796 21.661 hybrid contribution -1.093 0.091 0.511 1.210 sum 7.743 8.718 -17.285 20.850 Atomic orbital electron populations 1.21936 0.94824 1.02268 1.02513 1.21370 0.95896 1.00117 0.93331 0.88329 1.21612 0.95613 1.00651 0.97465 1.21525 0.95449 1.01155 0.97066 1.21501 1.00376 0.99274 0.94635 1.22065 0.94946 1.02217 0.98727 1.21060 0.94281 0.80287 1.00254 0.89725 1.55394 1.81754 1.24678 1.24163 1.04548 0.76240 0.74187 0.73784 1.93491 1.85068 1.38553 1.82322 1.93504 1.48842 1.86577 1.69510 1.30342 1.18462 1.14633 1.08461 1.18809 0.97187 0.95839 0.89958 1.21515 1.14382 1.15453 1.06290 0.90526 1.26119 1.00786 0.96248 0.97063 1.70106 1.42936 1.28811 1.15646 0.85314 0.78436 0.79278 0.77240 1.19644 1.20899 1.18034 0.92592 0.91235 0.92819 0.92336 0.90324 0.90899 0.91412 0.91690 0.93079 0.89205 0.92906 0.74127 0.84064 0.83993 0.97805 0.97596 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.03 71.98 0.65 -1.85 16 2 C -0.09 -1.29 2.54 -10.79 -0.03 -1.32 16 3 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 4 C -0.12 -1.53 5.02 30.59 0.15 -1.37 16 5 C -0.11 -1.50 5.92 30.59 0.18 -1.32 16 6 C -0.12 -2.13 5.77 30.60 0.18 -1.96 16 7 C -0.14 -2.87 5.64 30.59 0.17 -2.70 16 8 C 0.15 3.03 2.33 44.99 0.10 3.14 16 9 H 0.08 1.75 7.15 -2.39 -0.02 1.73 16 10 N -1.10 -26.90 3.86 -169.40 -0.65 -27.56 16 11 S 2.62 93.84 5.38 -56.49 -0.30 93.54 16 12 O -1.00 -42.73 18.08 -127.65 -2.31 -45.04 16 13 O -0.99 -41.70 17.11 -127.65 -2.18 -43.88 16 14 C -0.59 -22.04 5.90 71.98 0.42 -21.61 16 15 C 0.02 1.10 4.98 29.85 0.15 1.25 16 16 C -0.54 -29.73 9.11 25.60 0.23 -29.50 16 17 H 0.08 3.89 7.74 -2.92 -0.02 3.86 16 18 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 19 N -0.94 -57.20 13.29 21.45 0.28 -56.91 16 20 Si 0.97 43.19 29.54 68.60 2.03 45.21 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 23 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 24 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.05 0.92 7.60 -2.39 -0.02 0.90 16 27 H 0.06 0.83 6.50 -2.39 -0.02 0.82 16 28 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 32 H 0.05 1.03 7.45 -2.39 -0.02 1.01 16 33 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.05 1.39 7.43 -2.39 -0.02 1.37 16 35 H 0.42 8.81 6.78 -96.75 -0.66 8.15 16 36 H 0.14 4.57 7.44 -2.39 -0.02 4.55 16 37 H 0.14 4.67 8.14 -2.39 -0.02 4.65 16 38 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 39 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 40 H 0.27 15.26 8.31 -92.70 -0.77 14.49 16 Total: -1.00 -74.15 326.23 -0.10 -74.26 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.35 Total: 17.37 kcal Atomic # 6 Polarization: -59.67 SS G_CDS: 2.68 Total: -56.99 kcal Atomic # 7 Polarization: -84.10 SS G_CDS: -0.37 Total: -84.47 kcal Atomic # 8 Polarization: -84.43 SS G_CDS: -4.49 Total: -88.92 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: 93.84 SS G_CDS: -0.30 Total: 93.54 kcal Total: -74.15 -0.10 -74.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111324646.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.726 kcal (2) G-P(sol) polarization free energy of solvation -74.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds