Wall clock time and date at job start Mon Mar 30 2020 02:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47097 * 2 1 4 4 C 1.52999 * 109.47628 * 240.00203 * 2 1 3 5 5 C 1.52997 * 109.47317 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47060 * 59.99960 * 5 4 2 7 7 C 1.53002 * 109.47233 * 299.99657 * 6 5 4 8 8 C 1.52997 * 109.46817 * 60.00194 * 7 6 5 9 9 H 1.09002 * 109.47153 * 60.00231 * 8 7 6 10 10 N 1.46500 * 109.47007 * 180.02562 * 8 7 6 11 11 S 1.65601 * 119.99880 * 264.99882 * 10 8 7 12 12 O 1.42101 * 104.27597 * 181.07182 * 11 10 8 13 13 O 1.42097 * 104.27607 * 308.92782 * 11 10 8 14 14 C 1.81397 * 104.44839 * 65.00437 * 11 10 8 15 15 C 1.52996 * 109.47147 * 180.02562 * 14 11 10 16 16 C 1.50701 * 109.47421 * 179.97438 * 15 14 11 17 17 H 1.08000 * 119.99570 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00486 * 179.97438 * 16 15 14 19 19 N 1.31508 * 120.00312 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99699 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47120 * 90.00075 * 20 18 16 22 22 H 1.48504 * 109.47026 * 209.99564 * 20 18 16 23 23 H 1.48501 * 109.47210 * 329.99777 * 20 18 16 24 24 H 1.09001 * 109.47142 * 299.99965 * 1 2 3 25 25 H 1.08996 * 109.46698 * 60.00019 * 1 2 3 26 26 H 1.09002 * 109.46838 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46929 * 59.99225 * 4 2 1 28 28 H 1.09002 * 109.46716 * 300.00030 * 4 2 1 29 29 H 1.09002 * 109.47153 * 299.99641 * 5 4 2 30 30 H 1.09001 * 109.46832 * 179.97438 * 5 4 2 31 31 H 1.08992 * 109.47399 * 59.99823 * 6 5 4 32 32 H 1.09004 * 109.46724 * 180.02562 * 6 5 4 33 33 H 1.08993 * 109.47662 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.47075 * 300.00932 * 7 6 5 35 35 H 0.96997 * 120.00432 * 85.00352 * 10 8 7 36 36 H 1.09007 * 109.46772 * 299.99403 * 14 11 10 37 37 H 1.08999 * 109.47403 * 59.99452 * 14 11 10 38 38 H 1.09003 * 109.47099 * 299.99609 * 15 14 11 39 39 H 1.08999 * 109.47507 * 59.99405 * 15 14 11 40 40 H 0.97002 * 120.00250 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5701 -0.7217 -1.2488 6 6 4.0795 -1.4433 0.0004 7 6 3.5695 -0.7221 1.2497 8 6 2.0396 -0.7216 1.2493 9 1 1.6759 -1.7491 1.2491 10 7 1.5512 -0.0305 2.4452 11 16 1.1567 -0.8978 3.7996 12 8 0.7084 0.0827 4.7253 13 8 0.2812 -1.9110 3.3242 14 6 2.7277 -1.6198 4.3482 15 6 2.4926 -2.4555 5.6080 16 6 3.7976 -3.0559 6.0635 17 1 4.7041 -2.8612 5.5095 18 6 3.8345 -3.8537 7.1874 19 7 4.9733 -4.3780 7.5845 20 14 2.2666 -4.1910 8.1451 21 1 1.6095 -5.4086 7.6060 22 1 2.5970 -4.4001 9.5778 23 1 1.3470 -3.0325 8.0131 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6767 -0.2074 -2.1392 28 1 1.6768 -1.7489 -1.2492 29 1 3.9338 0.3059 -1.2486 30 1 3.9335 -1.2359 -2.1386 31 1 3.7159 -2.4708 0.0002 32 1 5.1696 -1.4433 0.0009 33 1 3.9328 -1.2359 2.1397 34 1 3.9331 0.3055 1.2499 35 1 1.4588 0.9351 2.4436 36 1 3.1298 -2.2566 3.5601 37 1 3.4372 -0.8220 4.5681 38 1 2.0903 -1.8192 6.3963 39 1 1.7833 -3.2533 5.3877 40 1 4.9993 -4.9390 8.3754 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111324649.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:27 Heat of formation + Delta-G solvation = -109.287780 kcal Electronic energy + Delta-G solvation = -20402.266699 eV Core-core repulsion = 17342.664713 eV Total energy + Delta-G solvation = -3059.601986 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.30849 -36.66258 -35.55161 -34.24407 -33.97043 -32.59310 -31.47300 -29.15383 -26.25277 -25.97458 -22.61677 -21.51666 -21.12418 -20.22581 -18.90943 -17.56722 -16.89201 -16.48609 -15.55123 -15.10811 -14.75218 -14.52172 -14.32464 -14.19312 -13.75777 -13.57590 -13.21669 -12.82368 -12.54815 -12.09096 -11.91413 -11.79200 -11.73153 -11.69637 -11.62537 -11.36363 -11.24700 -11.17498 -10.99584 -10.75760 -10.61219 -10.43572 -10.26263 -10.10588 -9.72813 -9.43702 -9.11925 -8.66188 -6.16530 -4.17661 0.69945 3.04192 3.26689 3.34072 3.38491 4.14497 4.36056 4.42525 4.53900 4.56795 4.72781 4.93224 5.01244 5.14089 5.16923 5.26984 5.30630 5.31165 5.42788 5.51604 5.55750 5.61333 5.72800 5.76331 5.84064 5.89294 5.99823 6.05725 6.08835 6.15970 6.22303 6.33069 6.38523 6.82330 6.93463 7.09904 7.55038 8.36653 8.84572 9.43369 10.95868 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.024551 B = 0.005244 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.216387 B = 5337.735227 C = 6095.218329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.090 4.090 3 H 0.074 0.926 4 C -0.114 4.114 5 C -0.121 4.121 6 C -0.119 4.119 7 C -0.148 4.148 8 C 0.152 3.848 9 H 0.093 0.907 10 N -1.119 6.119 11 S 2.589 3.411 12 O -0.969 6.969 13 O -0.966 6.966 14 C -0.585 4.585 15 C -0.007 4.007 16 C -0.519 4.519 17 H 0.078 0.922 18 C 0.072 3.928 19 N -0.896 5.896 20 Si 0.869 3.131 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.262 1.262 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.412 0.588 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.032 0.968 39 H 0.028 0.972 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.404 9.183 -17.866 20.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 H 0.093 0.907 4 C -0.152 4.152 5 C -0.158 4.158 6 C -0.158 4.158 7 C -0.187 4.187 8 C 0.045 3.955 9 H 0.111 0.889 10 N -0.875 5.875 11 S 2.686 3.314 12 O -0.960 6.960 13 O -0.956 6.956 14 C -0.718 4.718 15 C -0.046 4.046 16 C -0.558 4.558 17 H 0.096 0.904 18 C -0.131 4.131 19 N -0.534 5.534 20 Si 0.695 3.305 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.186 1.186 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.245 0.755 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.050 0.950 39 H 0.046 0.954 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.222 8.812 -17.364 20.160 hybrid contribution 0.053 0.102 0.515 0.527 sum -5.169 8.915 -16.850 19.751 Atomic orbital electron populations 1.21834 0.94728 1.02528 1.01558 1.21335 0.96106 0.99770 0.93840 0.90730 1.21605 0.95585 1.01050 0.96999 1.21568 0.95510 1.00793 0.97958 1.21515 1.00689 0.99685 0.93880 1.22253 0.95271 1.01997 0.99186 1.20883 0.93288 0.96868 0.84485 0.88922 1.55774 1.84244 1.19487 1.28016 1.05589 0.78179 0.74566 0.73067 1.93556 1.80558 1.59253 1.62589 1.93546 1.62296 1.60311 1.79437 1.30409 1.19437 1.11763 1.10168 1.19407 1.00177 0.94805 0.90240 1.20846 0.93087 1.30202 1.11623 0.90411 1.24976 0.96180 0.95014 0.96884 1.69877 1.25283 1.33053 1.25179 0.86936 0.84134 0.79740 0.79713 1.19666 1.20757 1.18632 0.92327 0.92846 0.92191 0.91722 0.91512 0.91999 0.91958 0.91483 0.91479 0.90545 0.91096 0.75464 0.85637 0.85475 0.94984 0.95404 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.03 37.16 0.34 -1.11 16 2 C -0.09 -0.83 2.36 -90.62 -0.21 -1.04 16 3 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 4 C -0.11 -0.91 5.20 -26.73 -0.14 -1.05 16 5 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 6 C -0.12 -1.08 5.92 -26.73 -0.16 -1.24 16 7 C -0.15 -1.51 5.49 -26.73 -0.15 -1.66 16 8 C 0.15 1.68 2.13 -67.93 -0.14 1.54 16 9 H 0.09 1.13 7.48 -51.93 -0.39 0.74 16 10 N -1.12 -13.68 4.59 -4.89 -0.02 -13.71 16 11 S 2.59 43.78 5.44 -107.50 -0.58 43.19 16 12 O -0.97 -19.13 18.08 -57.54 -1.04 -20.17 16 13 O -0.97 -18.84 17.39 -57.54 -1.00 -19.84 16 14 C -0.58 -10.62 5.16 37.16 0.19 -10.43 16 15 C -0.01 -0.17 4.05 -27.88 -0.11 -0.28 16 16 C -0.52 -14.42 9.66 -34.44 -0.33 -14.75 16 17 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 18 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 19 N -0.90 -27.03 13.96 55.43 0.77 -26.26 16 20 Si 0.87 21.52 27.47 -169.99 -4.67 16.85 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 24 H 0.06 0.61 7.60 -51.93 -0.39 0.22 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.86 5.78 -51.93 -0.30 0.56 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.41 4.18 8.80 -34.47 -0.30 3.88 16 36 H 0.13 2.06 6.78 -51.92 -0.35 1.71 16 37 H 0.13 2.10 8.14 -51.92 -0.42 1.68 16 38 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 39 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 40 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 325.15 15.07 4.90 4.90 Total: -1.00 -33.69 325.15 -9.36 -43.05 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.74 Total: 1.13 kcal Atomic # 6 Polarization: -28.17 SS G_CDS: -0.98 Total: -29.15 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 0.75 Total: -39.96 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -2.04 Total: -40.01 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Atomic # 16 Polarization: 43.78 SS G_CDS: -0.58 Total: 43.19 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.69 -9.36 -43.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111324649.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.234 kcal (2) G-P(sol) polarization free energy of solvation -33.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds