Wall clock time and date at job start Mon Mar 30 2020 02:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47097 * 2 1 4 4 C 1.52999 * 109.47628 * 240.00203 * 2 1 3 5 5 C 1.52997 * 109.47317 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47060 * 59.99960 * 5 4 2 7 7 C 1.53002 * 109.47233 * 299.99657 * 6 5 4 8 8 C 1.52997 * 109.46817 * 60.00194 * 7 6 5 9 9 H 1.09002 * 109.47153 * 60.00231 * 8 7 6 10 10 N 1.46500 * 109.47007 * 180.02562 * 8 7 6 11 11 S 1.65601 * 119.99880 * 264.99882 * 10 8 7 12 12 O 1.42101 * 104.27597 * 181.07182 * 11 10 8 13 13 O 1.42097 * 104.27607 * 308.92782 * 11 10 8 14 14 C 1.81397 * 104.44839 * 65.00437 * 11 10 8 15 15 C 1.52996 * 109.47147 * 180.02562 * 14 11 10 16 16 C 1.50701 * 109.47421 * 179.97438 * 15 14 11 17 17 H 1.08000 * 119.99570 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00486 * 179.97438 * 16 15 14 19 19 N 1.31508 * 120.00312 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99699 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47120 * 90.00075 * 20 18 16 22 22 H 1.48504 * 109.47026 * 209.99564 * 20 18 16 23 23 H 1.48501 * 109.47210 * 329.99777 * 20 18 16 24 24 H 1.09001 * 109.47142 * 299.99965 * 1 2 3 25 25 H 1.08996 * 109.46698 * 60.00019 * 1 2 3 26 26 H 1.09002 * 109.46838 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46929 * 59.99225 * 4 2 1 28 28 H 1.09002 * 109.46716 * 300.00030 * 4 2 1 29 29 H 1.09002 * 109.47153 * 299.99641 * 5 4 2 30 30 H 1.09001 * 109.46832 * 179.97438 * 5 4 2 31 31 H 1.08992 * 109.47399 * 59.99823 * 6 5 4 32 32 H 1.09004 * 109.46724 * 180.02562 * 6 5 4 33 33 H 1.08993 * 109.47662 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.47075 * 300.00932 * 7 6 5 35 35 H 0.96997 * 120.00432 * 85.00352 * 10 8 7 36 36 H 1.09007 * 109.46772 * 299.99403 * 14 11 10 37 37 H 1.08999 * 109.47403 * 59.99452 * 14 11 10 38 38 H 1.09003 * 109.47099 * 299.99609 * 15 14 11 39 39 H 1.08999 * 109.47507 * 59.99405 * 15 14 11 40 40 H 0.97002 * 120.00250 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5701 -0.7217 -1.2488 6 6 4.0795 -1.4433 0.0004 7 6 3.5695 -0.7221 1.2497 8 6 2.0396 -0.7216 1.2493 9 1 1.6759 -1.7491 1.2491 10 7 1.5512 -0.0305 2.4452 11 16 1.1567 -0.8978 3.7996 12 8 0.7084 0.0827 4.7253 13 8 0.2812 -1.9110 3.3242 14 6 2.7277 -1.6198 4.3482 15 6 2.4926 -2.4555 5.6080 16 6 3.7976 -3.0559 6.0635 17 1 4.7041 -2.8612 5.5095 18 6 3.8345 -3.8537 7.1874 19 7 4.9733 -4.3780 7.5845 20 14 2.2666 -4.1910 8.1451 21 1 1.6095 -5.4086 7.6060 22 1 2.5970 -4.4001 9.5778 23 1 1.3470 -3.0325 8.0131 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6767 -0.2074 -2.1392 28 1 1.6768 -1.7489 -1.2492 29 1 3.9338 0.3059 -1.2486 30 1 3.9335 -1.2359 -2.1386 31 1 3.7159 -2.4708 0.0002 32 1 5.1696 -1.4433 0.0009 33 1 3.9328 -1.2359 2.1397 34 1 3.9331 0.3055 1.2499 35 1 1.4588 0.9351 2.4436 36 1 3.1298 -2.2566 3.5601 37 1 3.4372 -0.8220 4.5681 38 1 2.0903 -1.8192 6.3963 39 1 1.7833 -3.2533 5.3877 40 1 4.9993 -4.9390 8.3754 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111324649.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:27 Heat of formation + Delta-G solvation = -133.209384 kcal Electronic energy + Delta-G solvation = -20403.304017 eV Core-core repulsion = 17342.664713 eV Total energy + Delta-G solvation = -3060.639304 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.10173 -38.14475 -37.04240 -35.91240 -35.15441 -33.58459 -33.23648 -29.98098 -27.89914 -27.00402 -23.60451 -22.95416 -22.11647 -21.06054 -20.20074 -19.35377 -18.36467 -17.63233 -17.05505 -16.44287 -16.29757 -15.54419 -15.44739 -15.12571 -14.96508 -14.80392 -14.51999 -14.09884 -13.81481 -13.35738 -13.24249 -13.14863 -13.08613 -12.98716 -12.90631 -12.71266 -12.54663 -12.24466 -12.11941 -11.95276 -11.73738 -11.71599 -11.54252 -11.32074 -11.13581 -10.99412 -10.84530 -10.22807 -8.36668 -6.42155 -0.70062 1.31455 1.33421 1.43426 1.80436 2.29275 2.75195 2.97426 3.24363 3.64498 3.80742 3.86698 3.96134 4.05546 4.22424 4.27804 4.34835 4.53511 4.54961 4.59774 4.61100 4.73128 4.86046 4.93019 5.04553 5.05371 5.07368 5.16481 5.23794 5.31180 5.36083 5.38932 5.44956 5.46798 5.50122 5.65235 6.16694 6.17588 6.63756 7.22284 8.78887 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.024551 B = 0.005244 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.216387 B = 5337.735227 C = 6095.218329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.086 4.086 3 H 0.091 0.909 4 C -0.113 4.113 5 C -0.117 4.117 6 C -0.122 4.122 7 C -0.149 4.149 8 C 0.145 3.855 9 H 0.079 0.921 10 N -1.100 6.100 11 S 2.619 3.381 12 O -0.995 6.995 13 O -0.990 6.990 14 C -0.590 4.590 15 C -0.017 4.017 16 C -0.526 4.526 17 H 0.050 0.950 18 C 0.015 3.985 19 N -0.940 5.940 20 Si 0.923 3.077 21 H -0.261 1.261 22 H -0.274 1.274 23 H -0.251 1.251 24 H 0.048 0.952 25 H 0.072 0.928 26 H 0.045 0.955 27 H 0.081 0.919 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.425 0.575 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.031 0.969 39 H 0.030 0.970 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.345 10.387 -19.380 22.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.106 4.106 3 H 0.109 0.891 4 C -0.151 4.151 5 C -0.154 4.154 6 C -0.160 4.160 7 C -0.188 4.188 8 C 0.038 3.962 9 H 0.098 0.902 10 N -0.861 5.861 11 S 2.714 3.286 12 O -0.986 6.986 13 O -0.980 6.980 14 C -0.721 4.721 15 C -0.056 4.056 16 C -0.565 4.565 17 H 0.069 0.931 18 C -0.184 4.184 19 N -0.579 5.579 20 Si 0.746 3.254 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.174 1.174 24 H 0.068 0.932 25 H 0.090 0.910 26 H 0.065 0.935 27 H 0.099 0.901 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.262 0.738 36 H 0.157 0.843 37 H 0.159 0.841 38 H 0.049 0.951 39 H 0.048 0.952 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.158 10.024 -18.877 22.243 hybrid contribution 0.414 -0.238 0.880 1.001 sum -5.744 9.786 -17.997 21.275 Atomic orbital electron populations 1.21869 0.95200 1.01810 1.02076 1.21341 0.95652 1.00496 0.93078 0.89094 1.21612 0.95784 1.00759 0.96926 1.21548 0.95192 1.01225 0.97431 1.21546 1.00965 0.99392 0.94111 1.22262 0.94485 1.02843 0.99232 1.21106 0.93977 0.96477 0.84651 0.90249 1.55328 1.83949 1.20022 1.26778 1.04470 0.77014 0.73863 0.73208 1.93515 1.80889 1.59829 1.64318 1.93516 1.62902 1.61622 1.79979 1.30416 1.21442 1.11950 1.08291 1.19370 0.97981 0.95536 0.92699 1.21164 0.94047 1.29996 1.11260 0.93148 1.25842 0.99333 0.95030 0.98147 1.70002 1.27515 1.34312 1.26120 0.86052 0.80434 0.80282 0.78636 1.18526 1.19869 1.17429 0.93245 0.90952 0.93544 0.90051 0.92176 0.91056 0.90965 0.92230 0.91088 0.92038 0.89698 0.73784 0.84323 0.84074 0.95075 0.95157 0.92125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.03 71.98 0.65 -1.99 16 2 C -0.09 -1.34 2.36 -10.79 -0.03 -1.37 16 3 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 4 C -0.11 -1.50 5.20 30.59 0.16 -1.34 16 5 C -0.12 -1.48 5.92 30.59 0.18 -1.29 16 6 C -0.12 -2.00 5.92 30.60 0.18 -1.82 16 7 C -0.15 -2.80 5.49 30.59 0.17 -2.63 16 8 C 0.14 2.96 2.13 44.99 0.10 3.06 16 9 H 0.08 1.86 7.48 -2.39 -0.02 1.85 16 10 N -1.10 -25.03 4.59 -169.38 -0.78 -25.81 16 11 S 2.62 85.86 5.44 -56.49 -0.31 85.55 16 12 O -1.00 -38.12 18.08 -127.65 -2.31 -40.43 16 13 O -0.99 -37.86 17.39 -127.65 -2.22 -40.08 16 14 C -0.59 -21.11 5.16 71.98 0.37 -20.74 16 15 C -0.02 -0.79 4.05 29.85 0.12 -0.67 16 16 C -0.53 -29.69 9.66 25.60 0.25 -29.44 16 17 H 0.05 3.03 7.99 -2.91 -0.02 3.00 16 18 C 0.02 0.87 5.47 84.66 0.46 1.34 16 19 N -0.94 -57.78 13.96 21.45 0.30 -57.48 16 20 Si 0.92 44.00 27.47 68.60 1.88 45.89 16 21 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 22 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.25 -11.39 6.54 99.48 0.65 -10.74 16 24 H 0.05 0.94 7.60 -2.39 -0.02 0.92 16 25 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.06 1.33 5.78 -2.39 -0.01 1.32 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 35 H 0.43 7.65 8.80 -96.75 -0.85 6.80 16 36 H 0.14 4.53 6.78 -2.39 -0.02 4.51 16 37 H 0.14 4.58 8.14 -2.39 -0.02 4.56 16 38 H 0.03 1.46 7.20 -2.39 -0.02 1.44 16 39 H 0.03 1.40 7.57 -2.39 -0.02 1.38 16 40 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -72.15 325.15 -0.71 -72.86 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.10 Total: 16.39 kcal Atomic # 6 Polarization: -59.52 SS G_CDS: 2.61 Total: -56.91 kcal Atomic # 7 Polarization: -82.81 SS G_CDS: -0.48 Total: -83.29 kcal Atomic # 8 Polarization: -75.97 SS G_CDS: -4.53 Total: -80.50 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.88 Total: 45.89 kcal Atomic # 16 Polarization: 85.86 SS G_CDS: -0.31 Total: 85.55 kcal Total: -72.15 -0.71 -72.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111324649.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.346 kcal (2) G-P(sol) polarization free energy of solvation -72.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds