Wall clock time and date at job start Mon Mar 30 2020 02:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47611 * 2 1 4 4 C 1.53006 * 109.47444 * 239.99899 * 2 1 3 5 5 C 1.53001 * 109.47444 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.46876 * 60.00359 * 5 4 2 7 7 C 1.53008 * 109.46982 * 299.99712 * 6 5 4 8 8 H 1.09001 * 109.46861 * 180.02562 * 7 6 5 9 9 N 1.46494 * 109.47187 * 300.00414 * 7 6 5 10 10 S 1.65608 * 119.99583 * 264.99978 * 9 7 6 11 11 O 1.42102 * 104.27529 * 181.07038 * 10 9 7 12 12 O 1.42093 * 104.27575 * 308.92948 * 10 9 7 13 13 C 1.81397 * 104.44943 * 65.00070 * 10 9 7 14 14 C 1.52996 * 109.47172 * 179.97438 * 13 10 9 15 15 C 1.50702 * 109.47624 * 179.97438 * 14 13 10 16 16 H 1.08002 * 119.99509 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00407 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99811 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 119.99892 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47613 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47216 * 120.00137 * 19 17 15 22 22 H 1.48503 * 109.47087 * 239.99741 * 19 17 15 23 23 C 1.53001 * 109.47080 * 60.00413 * 7 6 5 24 24 H 1.08995 * 109.46927 * 300.00058 * 1 2 3 25 25 H 1.09006 * 109.46577 * 59.99958 * 1 2 3 26 26 H 1.08991 * 109.46942 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46799 * 300.00598 * 4 2 1 28 28 H 1.09001 * 109.46669 * 60.00289 * 4 2 1 29 29 H 1.08995 * 109.46927 * 180.02562 * 5 4 2 30 30 H 1.08991 * 109.46942 * 300.00289 * 5 4 2 31 31 H 1.08999 * 109.46935 * 179.97438 * 6 5 4 32 32 H 1.08996 * 109.47211 * 59.99497 * 6 5 4 33 33 H 0.96995 * 120.00292 * 85.27441 * 9 7 6 34 34 H 1.09002 * 109.47515 * 299.99988 * 13 10 9 35 35 H 1.08999 * 109.47173 * 59.99866 * 13 10 9 36 36 H 1.09002 * 109.47161 * 299.99950 * 14 13 10 37 37 H 1.08999 * 109.46961 * 60.00006 * 14 13 10 38 38 H 0.97004 * 119.99866 * 180.02562 * 18 17 15 39 39 H 1.08996 * 109.47314 * 59.99451 * 23 7 6 40 40 H 1.08993 * 109.47438 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5701 -0.7207 -1.2496 6 6 4.0806 -1.4417 -0.0003 7 6 3.5706 -0.7204 1.2490 8 1 3.9346 -1.2337 2.1389 9 7 4.0584 0.6610 1.2486 10 16 5.4421 1.0506 2.0710 11 8 5.5862 2.4500 1.8710 12 8 5.2403 0.5131 3.3708 13 6 6.7536 0.1453 1.2044 14 6 8.0983 0.4273 1.8776 15 6 9.1879 -0.3252 1.1582 16 1 8.9456 -0.9425 0.3057 17 6 10.4941 -0.2257 1.5882 18 7 10.7891 0.5255 2.6265 19 14 11.8447 -1.1579 0.6959 20 1 11.2555 -1.9256 -0.4305 21 1 12.8458 -0.1956 0.1696 22 1 12.5066 -2.0942 1.6396 23 6 2.0406 -0.7209 1.2493 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6767 -1.7489 -1.2492 28 1 1.6768 -0.2074 -2.1392 29 1 3.9334 -1.2342 -2.1397 30 1 3.9330 0.3070 -1.2498 31 1 5.1706 -1.4417 -0.0008 32 1 3.7175 -2.4694 -0.0001 33 1 3.5688 1.3481 0.7702 34 1 6.5443 -0.9237 1.2436 35 1 6.7932 0.4699 0.1646 36 1 8.3074 1.4963 1.8380 37 1 8.0590 0.1030 2.9175 38 1 11.7082 0.5958 2.9288 39 1 1.6776 -1.7487 1.2494 40 1 1.6772 -0.2075 2.1394 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111327954.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:23 Heat of formation + Delta-G solvation = -111.763422 kcal Electronic energy + Delta-G solvation = -20323.837720 eV Core-core repulsion = 17264.128382 eV Total energy + Delta-G solvation = -3059.709337 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.41130 -36.53367 -35.40109 -34.20061 -33.89038 -32.11354 -31.13481 -29.29110 -26.63875 -25.54135 -22.71644 -21.75183 -21.38511 -19.92364 -18.55310 -17.49879 -16.56469 -15.96336 -15.69714 -15.22802 -14.81075 -14.60090 -14.52685 -14.10209 -13.67518 -13.36329 -12.77964 -12.68468 -12.50750 -12.30807 -12.01179 -11.80070 -11.67121 -11.55615 -11.47252 -11.25049 -11.12468 -11.08570 -10.94378 -10.67571 -10.47086 -10.37536 -10.30029 -10.14544 -9.75398 -9.38918 -8.99002 -8.50058 -6.11895 -4.17237 0.84714 3.19777 3.25451 3.32781 3.36051 4.27536 4.38894 4.52471 4.54241 4.55764 4.78177 4.96036 5.02046 5.14006 5.23482 5.29409 5.34385 5.43614 5.46403 5.54506 5.56743 5.65505 5.67673 5.76630 5.81612 5.91168 5.98497 6.06135 6.11886 6.19370 6.23678 6.38033 6.53581 7.17949 7.31683 7.37928 7.81364 8.18511 8.86444 9.47541 10.99233 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.027416 B = 0.004696 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.050433 B = 5960.647873 C = 6603.314412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 H 0.071 0.929 4 C -0.114 4.114 5 C -0.119 4.119 6 C -0.147 4.147 7 C 0.149 3.851 8 H 0.093 0.907 9 N -1.120 6.120 10 S 2.591 3.409 11 O -0.970 6.970 12 O -0.969 6.969 13 C -0.590 4.590 14 C 0.027 3.973 15 C -0.518 4.518 16 H 0.062 0.938 17 C 0.057 3.943 18 N -0.890 5.890 19 Si 0.899 3.101 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.116 4.116 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.410 0.590 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.033 0.967 37 H 0.033 0.967 38 H 0.264 0.736 39 H 0.074 0.926 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.951 -3.771 -7.163 20.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 H 0.089 0.911 4 C -0.151 4.151 5 C -0.157 4.157 6 C -0.187 4.187 7 C 0.041 3.959 8 H 0.111 0.889 9 N -0.877 5.877 10 S 2.689 3.311 11 O -0.961 6.961 12 O -0.958 6.958 13 C -0.723 4.723 14 C -0.012 4.012 15 C -0.558 4.558 16 H 0.080 0.920 17 C -0.145 4.145 18 N -0.529 5.529 19 Si 0.727 3.273 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.154 4.154 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.245 0.755 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.709 -3.264 -6.173 19.970 hybrid contribution 0.802 -0.610 -1.196 1.564 sum -17.907 -3.874 -7.369 19.748 Atomic orbital electron populations 1.21823 0.95271 1.01701 1.01601 1.21140 0.95330 0.99870 0.95007 0.91115 1.21608 0.95774 1.00517 0.97205 1.21478 0.95234 1.01364 0.97583 1.22219 1.01899 0.99535 0.94997 1.20777 0.95082 0.81677 0.98359 0.88869 1.55876 1.44024 1.16025 1.71805 1.05549 0.75099 0.75135 0.75353 1.93547 1.85921 1.30041 1.86547 1.93536 1.84434 1.80929 1.36946 1.30539 1.15627 1.12992 1.13175 1.18965 0.87298 0.98685 0.96206 1.21038 0.91395 1.28762 1.14601 0.92009 1.25067 0.98922 0.95426 0.95096 1.69966 1.19492 1.38641 1.24760 0.86424 0.81677 0.79632 0.79606 1.19661 1.20821 1.20817 1.21814 0.94081 1.01380 0.98171 0.92695 0.92820 0.92741 0.91999 0.92203 0.91917 0.91544 0.90621 0.90790 0.75548 0.86214 0.86110 0.94895 0.94869 0.92605 0.90763 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.20 37.16 0.34 -0.71 16 2 C -0.09 -0.79 2.54 -90.61 -0.23 -1.02 16 3 H 0.07 0.62 6.50 -51.93 -0.34 0.28 16 4 C -0.11 -0.91 5.20 -26.73 -0.14 -1.05 16 5 C -0.12 -1.10 5.77 -26.73 -0.15 -1.26 16 6 C -0.15 -1.49 5.60 -26.73 -0.15 -1.64 16 7 C 0.15 1.66 3.02 -67.93 -0.21 1.45 16 8 H 0.09 1.11 7.48 -51.93 -0.39 0.72 16 9 N -1.12 -14.40 4.63 -4.89 -0.02 -14.43 16 10 S 2.59 46.33 5.44 -107.50 -0.58 45.75 16 11 O -0.97 -20.32 18.08 -57.54 -1.04 -21.36 16 12 O -0.97 -20.18 17.39 -57.54 -1.00 -21.18 16 13 C -0.59 -11.16 5.16 37.16 0.19 -10.97 16 14 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 15 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16 16 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 19 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 23 C -0.12 -1.06 4.92 -26.73 -0.13 -1.19 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.65 7.45 -51.93 -0.39 0.26 16 31 H 0.08 0.84 5.78 -51.93 -0.30 0.54 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.41 4.58 6.78 -34.48 -0.23 4.35 16 34 H 0.12 2.01 6.77 -51.92 -0.35 1.66 16 35 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 36 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 325.14 15.07 4.90 4.90 Total: -1.00 -34.01 325.14 -9.67 -43.68 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -6.61 Total: 1.14 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: -1.03 Total: -28.88 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 0.71 Total: -40.21 kcal Atomic # 8 Polarization: -40.49 SS G_CDS: -2.04 Total: -42.54 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 46.33 SS G_CDS: -0.58 Total: 45.75 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.01 -9.67 -43.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111327954.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.083 kcal (2) G-P(sol) polarization free energy of solvation -34.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds