Wall clock time and date at job start Mon Mar 30 2020 02:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47611 * 2 1 4 4 C 1.53006 * 109.47444 * 239.99899 * 2 1 3 5 5 C 1.53001 * 109.47444 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.46876 * 60.00359 * 5 4 2 7 7 C 1.53008 * 109.46982 * 299.99712 * 6 5 4 8 8 H 1.09001 * 109.46861 * 180.02562 * 7 6 5 9 9 N 1.46494 * 109.47187 * 300.00414 * 7 6 5 10 10 S 1.65608 * 119.99583 * 264.99978 * 9 7 6 11 11 O 1.42102 * 104.27529 * 181.07038 * 10 9 7 12 12 O 1.42093 * 104.27575 * 308.92948 * 10 9 7 13 13 C 1.81397 * 104.44943 * 65.00070 * 10 9 7 14 14 C 1.52996 * 109.47172 * 179.97438 * 13 10 9 15 15 C 1.50702 * 109.47624 * 179.97438 * 14 13 10 16 16 H 1.08002 * 119.99509 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00407 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99811 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 119.99892 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47613 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47216 * 120.00137 * 19 17 15 22 22 H 1.48503 * 109.47087 * 239.99741 * 19 17 15 23 23 C 1.53001 * 109.47080 * 60.00413 * 7 6 5 24 24 H 1.08995 * 109.46927 * 300.00058 * 1 2 3 25 25 H 1.09006 * 109.46577 * 59.99958 * 1 2 3 26 26 H 1.08991 * 109.46942 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46799 * 300.00598 * 4 2 1 28 28 H 1.09001 * 109.46669 * 60.00289 * 4 2 1 29 29 H 1.08995 * 109.46927 * 180.02562 * 5 4 2 30 30 H 1.08991 * 109.46942 * 300.00289 * 5 4 2 31 31 H 1.08999 * 109.46935 * 179.97438 * 6 5 4 32 32 H 1.08996 * 109.47211 * 59.99497 * 6 5 4 33 33 H 0.96995 * 120.00292 * 85.27441 * 9 7 6 34 34 H 1.09002 * 109.47515 * 299.99988 * 13 10 9 35 35 H 1.08999 * 109.47173 * 59.99866 * 13 10 9 36 36 H 1.09002 * 109.47161 * 299.99950 * 14 13 10 37 37 H 1.08999 * 109.46961 * 60.00006 * 14 13 10 38 38 H 0.97004 * 119.99866 * 180.02562 * 18 17 15 39 39 H 1.08996 * 109.47314 * 59.99451 * 23 7 6 40 40 H 1.08993 * 109.47438 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5701 -0.7207 -1.2496 6 6 4.0806 -1.4417 -0.0003 7 6 3.5706 -0.7204 1.2490 8 1 3.9346 -1.2337 2.1389 9 7 4.0584 0.6610 1.2486 10 16 5.4421 1.0506 2.0710 11 8 5.5862 2.4500 1.8710 12 8 5.2403 0.5131 3.3708 13 6 6.7536 0.1453 1.2044 14 6 8.0983 0.4273 1.8776 15 6 9.1879 -0.3252 1.1582 16 1 8.9456 -0.9425 0.3057 17 6 10.4941 -0.2257 1.5882 18 7 10.7891 0.5255 2.6265 19 14 11.8447 -1.1579 0.6959 20 1 11.2555 -1.9256 -0.4305 21 1 12.8458 -0.1956 0.1696 22 1 12.5066 -2.0942 1.6396 23 6 2.0406 -0.7209 1.2493 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6767 -1.7489 -1.2492 28 1 1.6768 -0.2074 -2.1392 29 1 3.9334 -1.2342 -2.1397 30 1 3.9330 0.3070 -1.2498 31 1 5.1706 -1.4417 -0.0008 32 1 3.7175 -2.4694 -0.0001 33 1 3.5688 1.3481 0.7702 34 1 6.5443 -0.9237 1.2436 35 1 6.7932 0.4699 0.1646 36 1 8.3074 1.4963 1.8380 37 1 8.0590 0.1030 2.9175 38 1 11.7082 0.5958 2.9288 39 1 1.6776 -1.7487 1.2494 40 1 1.6772 -0.2075 2.1394 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111327954.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:22 Heat of formation + Delta-G solvation = -135.494865 kcal Electronic energy + Delta-G solvation = -20324.866792 eV Core-core repulsion = 17264.128382 eV Total energy + Delta-G solvation = -3060.738410 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.20191 -38.13159 -37.00524 -35.90020 -35.08516 -33.20699 -32.75679 -30.17797 -27.69976 -27.12052 -23.63179 -23.45462 -22.16641 -20.96870 -19.76605 -19.05471 -18.32316 -17.22439 -17.06738 -16.53110 -16.25216 -16.10933 -15.39096 -15.07398 -14.88893 -14.46032 -14.32585 -13.83656 -13.66019 -13.40624 -13.19450 -13.13894 -12.98904 -12.95739 -12.83489 -12.59688 -12.45673 -12.38614 -12.21759 -12.08132 -11.81642 -11.71571 -11.39727 -11.21427 -10.97561 -10.87460 -10.64977 -10.24149 -8.25474 -6.39248 -0.64797 1.41406 1.41883 1.55208 1.88434 2.38467 2.82313 3.08254 3.28139 3.76340 3.83465 3.88685 4.01086 4.11668 4.21750 4.31751 4.37516 4.58217 4.64840 4.71042 4.73191 4.81288 4.88196 4.91831 5.05344 5.14444 5.22727 5.25697 5.28840 5.29601 5.39166 5.46149 5.47703 5.53686 5.67030 5.69567 6.06939 6.18145 6.74729 7.30998 8.87146 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.027416 B = 0.004696 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.050433 B = 5960.647873 C = 6603.314412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 H 0.064 0.936 4 C -0.109 4.109 5 C -0.122 4.122 6 C -0.148 4.148 7 C 0.139 3.861 8 H 0.085 0.915 9 N -1.100 6.100 10 S 2.617 3.383 11 O -1.003 7.003 12 O -0.999 6.999 13 C -0.586 4.586 14 C 0.020 3.980 15 C -0.536 4.536 16 H 0.077 0.923 17 C -0.005 4.005 18 N -0.935 5.935 19 Si 0.974 3.026 20 H -0.255 1.255 21 H -0.279 1.279 22 H -0.278 1.278 23 C -0.112 4.112 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.421 0.579 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.005 0.995 37 H 0.006 0.994 38 H 0.267 0.733 39 H 0.093 0.907 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.189 -5.385 -9.148 22.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 H 0.082 0.918 4 C -0.146 4.146 5 C -0.159 4.159 6 C -0.187 4.187 7 C 0.032 3.968 8 H 0.103 0.897 9 N -0.862 5.862 10 S 2.713 3.287 11 O -0.993 6.993 12 O -0.989 6.989 13 C -0.718 4.718 14 C -0.019 4.019 15 C -0.575 4.575 16 H 0.095 0.905 17 C -0.203 4.203 18 N -0.575 5.575 19 Si 0.798 3.202 20 H -0.178 1.178 21 H -0.205 1.205 22 H -0.204 1.204 23 C -0.151 4.151 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.259 0.741 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.023 0.977 37 H 0.024 0.976 38 H 0.076 0.924 39 H 0.111 0.889 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.957 -4.877 -8.173 22.111 hybrid contribution 1.097 -0.112 -0.572 1.242 sum -18.861 -4.989 -8.745 21.380 Atomic orbital electron populations 1.21794 0.94264 1.02284 1.01793 1.21156 0.96172 0.99408 0.94728 0.91781 1.21579 0.94693 1.01162 0.97203 1.21511 0.96257 1.00827 0.97322 1.22235 1.01229 1.00580 0.94661 1.21067 0.96700 0.80183 0.98833 0.89697 1.55399 1.41953 1.17549 1.71298 1.04499 0.75490 0.73868 0.74820 1.93494 1.86749 1.32147 1.86932 1.93495 1.85073 1.81238 1.39092 1.30429 1.12660 1.14925 1.13766 1.18827 0.90858 0.96740 0.95456 1.21539 0.92183 1.28769 1.14966 0.90532 1.26116 1.01924 0.96365 0.95870 1.70113 1.20230 1.40484 1.26664 0.85262 0.78110 0.78207 0.78645 1.17842 1.20476 1.20404 1.21823 0.92178 1.02656 0.98486 0.92911 0.92290 0.91962 0.90995 0.91517 0.91279 0.92343 0.91748 0.88884 0.74139 0.83921 0.83996 0.97711 0.97571 0.92440 0.88895 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.20 71.98 0.66 -1.04 16 2 C -0.10 -1.35 2.54 -10.79 -0.03 -1.38 16 3 H 0.06 0.98 6.50 -2.39 -0.02 0.97 16 4 C -0.11 -1.42 5.20 30.60 0.16 -1.26 16 5 C -0.12 -1.94 5.77 30.59 0.18 -1.76 16 6 C -0.15 -2.64 5.60 30.60 0.17 -2.47 16 7 C 0.14 2.85 3.02 45.00 0.14 2.99 16 8 H 0.08 1.92 7.48 -2.39 -0.02 1.90 16 9 N -1.10 -27.14 4.63 -169.39 -0.78 -27.92 16 10 S 2.62 94.20 5.44 -56.49 -0.31 93.90 16 11 O -1.00 -42.69 18.08 -127.65 -2.31 -44.99 16 12 O -1.00 -42.29 17.39 -127.65 -2.22 -44.51 16 13 C -0.59 -22.03 5.16 71.98 0.37 -21.66 16 14 C 0.02 1.05 4.98 29.85 0.15 1.20 16 15 C -0.54 -29.59 9.11 25.60 0.23 -29.35 16 16 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 17 C 0.00 -0.26 5.46 84.65 0.46 0.21 16 18 N -0.94 -57.11 13.29 21.45 0.28 -56.82 16 19 Si 0.97 43.23 29.54 68.60 2.03 45.25 16 20 H -0.25 -10.50 7.11 99.48 0.71 -9.79 16 21 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 23 C -0.11 -1.80 4.92 30.60 0.15 -1.65 16 24 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 26 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 1.02 7.45 -2.39 -0.02 1.00 16 31 H 0.06 1.29 5.78 -2.39 -0.01 1.28 16 32 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 33 H 0.42 8.87 6.78 -96.75 -0.66 8.22 16 34 H 0.14 4.66 6.77 -2.39 -0.02 4.64 16 35 H 0.14 4.69 8.14 -2.39 -0.02 4.67 16 36 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 37 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 39 H 0.09 1.17 8.14 -2.39 -0.02 1.16 16 40 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -74.03 325.14 -0.31 -74.34 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.36 Total: 16.93 kcal Atomic # 6 Polarization: -58.81 SS G_CDS: 2.64 Total: -56.17 kcal Atomic # 7 Polarization: -84.24 SS G_CDS: -0.50 Total: -84.74 kcal Atomic # 8 Polarization: -84.98 SS G_CDS: -4.53 Total: -89.51 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 94.20 SS G_CDS: -0.31 Total: 93.90 kcal Total: -74.03 -0.31 -74.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111327954.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.154 kcal (2) G-P(sol) polarization free energy of solvation -74.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds