Wall clock time and date at job start Mon Mar 30 2020 02:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08990 * 109.47112 * 2 1 4 4 C 1.53002 * 109.46581 * 119.99446 * 2 1 3 5 5 C 1.53000 * 109.47148 * 184.99785 * 4 2 1 6 6 C 1.52994 * 117.50204 * 243.62295 * 5 4 2 7 7 C 1.52992 * 117.50161 * 174.99909 * 5 4 2 8 8 N 1.46499 * 109.47133 * 239.99324 * 2 1 3 9 9 S 1.65593 * 119.99833 * 95.00483 * 8 2 1 10 10 O 1.42104 * 104.27905 * 308.92754 * 9 8 2 11 11 O 1.42102 * 104.27718 * 181.06534 * 9 8 2 12 12 C 1.81399 * 104.45079 * 64.99683 * 9 8 2 13 13 C 1.53005 * 109.47445 * 179.97438 * 12 9 8 14 14 C 1.52996 * 109.47245 * 179.97438 * 13 12 9 15 15 C 1.50703 * 109.46946 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99876 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99789 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99734 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00111 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47123 * 89.99915 * 19 17 15 21 21 H 1.48503 * 109.46827 * 209.99661 * 19 17 15 22 22 H 1.48497 * 109.47329 * 329.99749 * 19 17 15 23 23 H 1.09002 * 109.46477 * 60.00638 * 1 2 3 24 24 H 1.09004 * 109.47144 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47240 * 300.00658 * 1 2 3 26 26 H 1.08995 * 109.47584 * 305.00287 * 4 2 1 27 27 H 1.09003 * 109.47156 * 65.00131 * 4 2 1 28 28 H 1.09003 * 115.54566 * 29.33515 * 5 4 2 29 29 H 1.08996 * 117.50038 * 0.02562 * 6 5 4 30 30 H 1.09001 * 117.49816 * 145.02154 * 6 5 4 31 31 H 1.09007 * 117.50258 * 214.98459 * 7 5 4 32 32 H 1.09006 * 117.50045 * 359.97438 * 7 5 4 33 33 H 0.97001 * 119.99882 * 274.99955 * 8 2 1 34 34 H 1.09001 * 109.47190 * 299.99797 * 12 9 8 35 35 H 1.09004 * 109.47089 * 59.99930 * 12 9 8 36 36 H 1.09001 * 109.46962 * 300.00183 * 13 12 9 37 37 H 1.09004 * 109.46832 * 60.00020 * 13 12 9 38 38 H 1.09001 * 109.47372 * 300.00032 * 14 13 12 39 39 H 1.09004 * 109.47108 * 60.00288 * 14 13 12 40 40 H 0.97007 * 120.00011 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5647 -0.6133 1.3139 6 6 4.3694 -1.9112 1.2209 7 6 4.2606 -1.1727 2.5563 8 7 2.0184 -0.6907 -1.1961 9 16 2.4123 0.1769 -2.5504 10 8 1.2752 0.9964 -2.7846 11 8 2.8125 -0.8079 -3.4934 12 6 3.8314 1.1870 -2.0440 13 6 4.2944 2.0441 -3.2238 14 6 5.4909 2.8965 -2.7965 15 6 5.9465 3.7411 -3.9585 16 1 5.4336 3.6766 -4.9068 17 6 7.0174 4.5968 -3.8106 18 7 7.4153 5.3335 -4.8248 19 14 7.9040 4.7088 -2.1702 20 1 9.0096 3.7180 -2.1365 21 1 8.4588 6.0757 -1.9997 22 1 6.9484 4.4217 -1.0704 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.6052 -0.2617 2.1370 27 1 1.7515 -1.7714 1.2058 28 1 3.9927 0.2785 0.8560 29 1 3.8125 -2.8420 1.1132 30 1 5.3270 -1.8736 0.7015 31 1 5.1466 -0.6492 2.9156 32 1 3.6320 -1.6172 3.3280 33 1 2.1110 -1.6563 -1.1947 34 1 3.5400 1.8341 -1.2167 35 1 4.6460 0.5359 -1.7266 36 1 4.5859 1.3967 -4.0509 37 1 3.4800 2.6951 -3.5416 38 1 5.1990 3.5439 -1.9696 39 1 6.3055 2.2457 -2.4784 40 1 8.1689 5.9353 -4.7209 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112707625.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:58 Heat of formation + Delta-G solvation = -100.299432 kcal Electronic energy + Delta-G solvation = -19876.866625 eV Core-core repulsion = 16817.654403 eV Total energy + Delta-G solvation = -3059.212222 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.14341 -38.14301 -37.03524 -36.56242 -36.49370 -34.25599 -31.35688 -30.16714 -28.26314 -25.40959 -23.15641 -22.62102 -22.30178 -21.33763 -20.36668 -18.97613 -18.60696 -17.58393 -17.20916 -16.61523 -16.21515 -15.99560 -15.54884 -15.35143 -14.88973 -14.56014 -14.09542 -14.00026 -13.69570 -13.61095 -13.23738 -13.17465 -13.08808 -13.03430 -12.71018 -12.57112 -12.50657 -12.26584 -12.03668 -11.87285 -11.84194 -11.64665 -11.43952 -11.36985 -10.98471 -10.78338 -10.71382 -10.30512 -8.30603 -6.36551 -0.70238 1.35710 1.38274 1.49835 1.83497 2.35475 2.78713 2.99774 3.04642 3.26418 3.62283 3.70899 3.91357 4.01528 4.13761 4.18570 4.29271 4.32958 4.39782 4.55589 4.63073 4.73313 4.84258 4.88541 4.93764 4.95695 5.04210 5.06446 5.15736 5.32551 5.33995 5.38667 5.45151 5.46912 5.52012 5.61916 6.21093 6.24709 6.71708 7.28144 8.86532 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.017149 B = 0.005117 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.366960 B = 5470.554617 C = 6501.158431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.144 3.856 3 H 0.089 0.911 4 C -0.085 4.085 5 C -0.163 4.163 6 C -0.188 4.188 7 C -0.180 4.180 8 N -1.099 6.099 9 S 2.622 3.378 10 O -0.990 6.990 11 O -0.998 6.998 12 C -0.612 4.612 13 C -0.103 4.103 14 C -0.004 4.004 15 C -0.544 4.544 16 H 0.029 0.971 17 C 0.002 3.998 18 N -0.953 5.953 19 Si 0.954 3.046 20 H -0.265 1.265 21 H -0.285 1.285 22 H -0.238 1.238 23 H 0.048 0.952 24 H 0.068 0.932 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.425 0.575 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.033 0.967 39 H 0.030 0.970 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.968 -15.455 19.637 27.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.038 3.962 3 H 0.107 0.893 4 C -0.124 4.124 5 C -0.181 4.181 6 C -0.225 4.225 7 C -0.217 4.217 8 N -0.861 5.861 9 S 2.717 3.283 10 O -0.980 6.980 11 O -0.989 6.989 12 C -0.743 4.743 13 C -0.142 4.142 14 C -0.042 4.042 15 C -0.582 4.582 16 H 0.047 0.953 17 C -0.195 4.195 18 N -0.593 5.593 19 Si 0.777 3.223 20 H -0.190 1.190 21 H -0.211 1.211 22 H -0.161 1.161 23 H 0.067 0.933 24 H 0.087 0.913 25 H 0.103 0.897 26 H 0.115 0.885 27 H 0.100 0.900 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.121 0.879 33 H 0.261 0.739 34 H 0.171 0.829 35 H 0.171 0.829 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.051 0.949 39 H 0.048 0.952 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.354 -15.208 18.750 26.679 hybrid contribution 1.211 0.292 0.201 1.262 sum -10.143 -14.917 18.951 26.163 Atomic orbital electron populations 1.22337 0.94787 1.03172 1.02975 1.21020 0.94611 0.96286 0.84324 0.89315 1.21483 0.92255 1.01891 0.96765 1.22440 0.94831 0.98056 1.02758 1.23111 1.02126 0.96288 1.01013 1.23003 1.02980 1.04197 0.91523 1.55368 1.81691 1.19563 1.29466 1.04383 0.76051 0.74388 0.73486 1.93542 1.48384 1.71568 1.84527 1.93531 1.84979 1.59109 1.61245 1.30541 1.20135 1.14373 1.09204 1.21166 0.99882 0.97860 0.95307 1.19495 0.94155 0.94816 0.95778 1.21563 1.15101 1.23252 0.98325 0.95267 1.26102 0.97753 0.94478 1.01160 1.70086 1.28172 1.27290 1.33751 0.85604 0.79278 0.77659 0.79796 1.19030 1.21084 1.16073 0.93303 0.91340 0.89704 0.88526 0.89964 0.88054 0.87962 0.89518 0.89214 0.87859 0.73904 0.82902 0.82853 0.92109 0.91901 0.94892 0.95207 0.92424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.51 9.52 71.98 0.69 -1.83 16 2 C 0.14 2.03 2.63 44.99 0.12 2.15 16 3 H 0.09 1.19 7.15 -2.39 -0.02 1.17 16 4 C -0.09 -0.84 5.09 30.60 0.16 -0.69 16 5 C -0.16 -2.04 5.47 -10.80 -0.06 -2.10 16 6 C -0.19 -2.44 10.18 30.59 0.31 -2.13 16 7 C -0.18 -2.16 10.25 30.59 0.31 -1.85 16 8 N -1.10 -19.08 5.08 -169.39 -0.86 -19.94 16 9 S 2.62 70.41 5.38 -56.49 -0.30 70.11 16 10 O -0.99 -32.97 17.11 -127.65 -2.18 -35.15 16 11 O -1.00 -33.86 18.08 -127.65 -2.31 -36.17 16 12 C -0.61 -15.93 5.96 71.98 0.43 -15.50 16 13 C -0.10 -3.94 5.16 30.59 0.16 -3.79 16 14 C 0.00 -0.18 4.04 29.85 0.12 -0.06 16 15 C -0.54 -31.67 9.66 25.60 0.25 -31.42 16 16 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 17 C 0.00 0.10 5.47 84.65 0.46 0.57 16 18 N -0.95 -60.31 13.96 21.45 0.30 -60.01 16 19 Si 0.95 43.16 27.47 68.60 1.88 45.04 16 20 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 22 H -0.24 -9.60 6.54 99.48 0.65 -8.94 16 23 H 0.05 0.98 7.42 -2.39 -0.02 0.97 16 24 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.08 0.67 7.88 -2.39 -0.02 0.66 16 28 H 0.10 1.39 8.07 -2.39 -0.02 1.38 16 29 H 0.10 1.12 8.03 -2.39 -0.02 1.10 16 30 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.42 5.87 8.80 -96.75 -0.85 5.02 16 34 H 0.15 3.14 7.44 -2.39 -0.02 3.12 16 35 H 0.15 3.27 8.14 -2.39 -0.02 3.25 16 36 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 38 H 0.03 1.40 7.20 -2.39 -0.02 1.39 16 39 H 0.03 1.26 7.57 -2.38 -0.02 1.24 16 40 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 Total: -1.00 -77.47 340.42 -0.43 -77.90 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.10 Total: 14.85 kcal Atomic # 6 Polarization: -59.58 SS G_CDS: 2.94 Total: -56.64 kcal Atomic # 7 Polarization: -79.38 SS G_CDS: -0.56 Total: -79.94 kcal Atomic # 8 Polarization: -66.83 SS G_CDS: -4.49 Total: -71.32 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 1.88 Total: 45.04 kcal Atomic # 16 Polarization: 70.41 SS G_CDS: -0.30 Total: 70.11 kcal Total: -77.47 -0.43 -77.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112707625.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.402 kcal (2) G-P(sol) polarization free energy of solvation -77.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds