Wall clock time and date at job start Mon Mar 30 2020 02:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 115.56757 * 2 1 4 4 C 1.53081 * 117.49227 * 145.70996 * 2 1 3 5 5 C 1.53000 * 117.49905 * 214.31262 * 2 1 3 6 6 H 1.09005 * 117.49783 * 0.02562 * 5 2 1 7 7 C 1.50696 * 117.50244 * 145.02269 * 5 2 1 8 8 O 1.21281 * 119.99889 * 359.91169 * 7 5 2 9 9 N 1.34779 * 120.00222 * 179.91243 * 7 5 2 10 10 C 1.46493 * 120.00069 * 179.97438 * 9 7 5 11 11 C 1.50703 * 109.47194 * 180.02562 * 10 9 7 12 12 C 1.38322 * 119.96907 * 89.99998 * 11 10 9 13 13 C 1.38275 * 120.13916 * 180.02562 * 12 11 10 14 14 C 1.38116 * 120.07038 * 359.97438 * 13 12 11 15 15 C 1.38852 * 119.93228 * 0.02562 * 14 13 12 16 16 O 1.35751 * 120.07364 * 179.97438 * 15 14 13 17 17 C 1.34832 * 116.99677 * 354.48505 * 16 15 14 18 18 H 1.07999 * 120.00031 * 5.06419 * 17 16 15 19 19 C 1.38656 * 120.00253 * 185.05374 * 17 16 15 20 20 N 1.31565 * 119.99758 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00269 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.46957 * 60.00409 * 21 19 17 23 23 H 1.48502 * 109.46840 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47011 * 300.00201 * 21 19 17 25 25 C 1.38082 * 119.96422 * 270.02226 * 11 10 9 26 26 H 1.08997 * 109.47341 * 205.68848 * 1 2 3 27 27 H 1.09005 * 109.47009 * 325.69308 * 1 2 3 28 28 H 1.09001 * 109.46969 * 85.68599 * 1 2 3 29 29 H 1.08999 * 117.49056 * 0.02562 * 4 2 1 30 30 H 1.09000 * 117.53366 * 214.94946 * 4 2 1 31 31 H 0.97002 * 119.99803 * 359.97438 * 9 7 5 32 32 H 1.09000 * 109.47587 * 60.00007 * 10 9 7 33 33 H 1.09001 * 109.47586 * 299.99702 * 10 9 7 34 34 H 1.08000 * 119.92941 * 0.02562 * 12 11 10 35 35 H 1.08009 * 119.96415 * 179.72072 * 13 12 11 36 36 H 1.08000 * 120.03374 * 179.97438 * 14 13 12 37 37 H 0.96993 * 119.99743 * 180.02562 * 20 19 17 38 38 H 1.08004 * 120.03549 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9832 0.0000 4 6 2.2366 -1.1219 0.7650 5 6 2.2364 -1.1210 -0.7650 6 1 1.6111 -1.8582 -1.2687 7 6 3.5292 -0.7812 -1.4608 8 8 3.9709 0.3468 -1.4025 9 7 4.1946 -1.7308 -2.1479 10 6 5.4510 -1.4003 -2.8248 11 6 5.9879 -2.6278 -3.5148 12 6 5.6245 -2.9007 -4.8212 13 6 6.1146 -4.0262 -5.4575 14 6 6.9694 -4.8815 -4.7901 15 6 7.3361 -4.6104 -3.4786 16 8 8.1757 -5.4494 -2.8198 17 6 8.5270 -6.5862 -3.4540 18 1 8.2096 -6.7568 -4.4720 19 6 9.2961 -7.5361 -2.7992 20 7 9.6825 -7.3284 -1.5589 21 14 9.7834 -9.1108 -3.6780 22 1 10.5783 -8.7772 -4.8870 23 1 10.5978 -9.9545 -2.7668 24 1 8.5609 -9.8528 -4.0785 25 6 6.8418 -3.4792 -2.8420 26 1 -0.3634 -0.9261 0.4454 27 1 -0.3633 0.8489 0.5792 28 1 -0.3633 0.0773 -1.0248 29 1 1.6111 -1.8597 1.2676 30 1 3.1720 -0.8771 1.2683 31 1 3.8414 -2.6330 -2.1942 32 1 6.1770 -1.0483 -2.0918 33 1 5.2715 -0.6184 -3.5628 34 1 4.9565 -2.2332 -5.3453 35 1 5.8254 -4.2390 -6.4762 36 1 7.3515 -5.7607 -5.2876 37 1 10.2208 -7.9928 -1.1009 38 1 7.1253 -3.2656 -1.8220 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113105923.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:48 Heat of formation + Delta-G solvation = -24.796578 kcal Electronic energy + Delta-G solvation = -19890.162311 eV Core-core repulsion = 16698.780187 eV Total energy + Delta-G solvation = -3191.382123 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.03860 -39.11288 -37.23444 -36.54815 -34.46443 -32.35496 -30.90739 -29.27308 -28.87676 -26.31721 -25.26862 -23.49481 -21.72953 -21.07400 -20.79616 -20.00980 -17.99783 -17.39549 -16.88534 -15.90134 -15.42398 -15.06795 -14.78942 -14.50598 -14.35102 -14.05470 -13.70239 -13.50111 -13.40472 -12.93837 -12.72127 -12.42379 -12.25292 -12.13903 -11.70443 -11.61851 -11.40776 -10.95522 -10.84809 -10.72847 -10.54291 -10.50697 -10.27695 -9.84343 -9.43270 -8.98157 -8.90541 -8.26238 -7.35062 -6.50846 -4.10570 1.88213 2.24935 2.50551 3.09292 3.09460 3.13252 3.29872 3.67953 3.91187 4.43979 4.57093 4.58110 4.67273 4.91157 5.01674 5.06740 5.09071 5.25983 5.41873 5.49531 5.51772 5.53993 5.72405 5.75694 5.80439 5.82832 5.91763 6.05727 6.10017 6.23225 6.49065 6.53575 6.79611 6.97183 7.16611 7.25094 7.33465 7.58596 7.69682 7.93152 8.27194 8.94299 9.62796 10.66826 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.025898 B = 0.003211 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.907260 B = 8716.936777 C = 9270.466515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.124 4.124 3 H 0.117 0.883 4 C -0.149 4.149 5 C -0.191 4.191 6 H 0.123 0.877 7 C 0.540 3.460 8 O -0.548 6.548 9 N -0.716 5.716 10 C 0.167 3.833 11 C -0.073 4.073 12 C -0.196 4.196 13 C -0.076 4.076 14 C -0.226 4.226 15 C 0.150 3.850 16 O -0.176 6.176 17 C -0.394 4.394 18 H 0.092 0.908 19 C 0.040 3.960 20 N -0.861 5.861 21 Si 0.941 3.059 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.270 1.270 25 C -0.171 4.171 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.404 0.596 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.128 0.872 37 H 0.271 0.729 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.451 8.169 -0.200 16.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.143 4.143 3 H 0.135 0.865 4 C -0.186 4.186 5 C -0.212 4.212 6 H 0.141 0.859 7 C 0.327 3.673 8 O -0.426 6.426 9 N -0.367 5.367 10 C 0.045 3.955 11 C -0.074 4.074 12 C -0.215 4.215 13 C -0.094 4.094 14 C -0.246 4.246 15 C 0.097 3.903 16 O -0.079 6.079 17 C -0.470 4.470 18 H 0.109 0.891 19 C -0.164 4.164 20 N -0.496 5.496 21 Si 0.766 3.234 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.195 1.195 25 C -0.191 4.191 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.122 0.878 30 H 0.118 0.882 31 H 0.239 0.761 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.146 0.854 37 H 0.081 0.919 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.851 8.861 0.245 16.445 hybrid contribution 0.207 -1.438 -0.680 1.605 sum -13.645 7.422 -0.435 15.539 Atomic orbital electron populations 1.21398 0.92327 1.02174 1.02134 1.22380 0.95104 0.95110 1.01670 0.86541 1.23122 1.03172 1.01388 0.90917 1.22314 0.97822 1.05168 0.95885 0.85922 1.19667 0.84656 0.84707 0.78294 1.90678 1.68883 1.21198 1.61873 1.46067 1.24390 1.13545 1.52649 1.20161 0.84865 0.94771 0.95718 1.19268 0.98335 0.95376 0.94390 1.20476 1.05900 0.99998 0.95128 1.20745 0.96141 0.94013 0.98505 1.21240 1.04618 1.02996 0.95707 1.19321 0.89293 0.90855 0.90865 1.83984 1.53115 1.28769 1.42033 1.21279 1.33772 0.93641 0.98331 0.89083 1.25300 0.96351 0.98950 0.95839 1.70028 1.33806 1.35338 1.10392 0.85776 0.78941 0.79924 0.78772 1.19459 1.20227 1.19474 1.20088 1.02863 0.95786 1.00332 0.92339 0.91750 0.91990 0.87769 0.88192 0.76102 0.90894 0.90963 0.87515 0.87266 0.85447 0.91875 0.86405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 10.19 37.15 0.38 -0.50 16 2 C -0.12 -1.19 5.92 -90.58 -0.54 -1.73 16 3 H 0.12 1.30 7.67 -51.93 -0.40 0.90 16 4 C -0.15 -1.38 9.88 -26.69 -0.26 -1.65 16 5 C -0.19 -1.99 5.91 -91.77 -0.54 -2.53 16 6 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 7 C 0.54 7.51 7.61 -10.99 -0.08 7.43 16 8 O -0.55 -9.52 16.26 5.56 0.09 -9.43 16 9 N -0.72 -9.60 5.55 -61.48 -0.34 -9.94 16 10 C 0.17 2.50 5.80 -5.20 -0.03 2.47 16 11 C -0.07 -1.24 5.25 -104.65 -0.55 -1.79 16 12 C -0.20 -3.19 9.70 -39.54 -0.38 -3.58 16 13 C -0.08 -1.32 10.04 -39.61 -0.40 -1.72 16 14 C -0.23 -4.70 9.17 -39.40 -0.36 -5.06 16 15 C 0.15 3.50 6.65 -39.11 -0.26 3.24 16 16 O -0.18 -4.89 9.76 0.04 0.00 -4.89 16 17 C -0.39 -10.75 9.49 30.89 0.29 -10.46 16 18 H 0.09 2.28 5.20 -52.49 -0.27 2.01 16 19 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 20 N -0.86 -24.85 13.67 55.48 0.76 -24.10 16 21 Si 0.94 20.07 29.55 -169.99 -5.02 15.05 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 25 C -0.17 -3.45 9.65 -39.39 -0.38 -3.83 16 26 H 0.06 0.36 7.90 -51.93 -0.41 -0.05 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.10 0.77 8.05 -51.93 -0.42 0.35 16 30 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.40 4.84 8.46 -40.82 -0.35 4.49 16 32 H 0.07 1.14 8.09 -51.93 -0.42 0.72 16 33 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 34 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 35 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 36 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16 37 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.12 2.36 8.06 -52.48 -0.42 1.94 16 LS Contribution 330.99 15.07 4.99 4.99 Total: -1.00 -31.28 330.99 -7.81 -39.09 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -5.08 Total: 7.94 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -3.21 Total: -18.71 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.42 Total: -34.03 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: 0.09 Total: -14.32 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.28 -7.81 -39.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113105923.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.293 kcal (2) G-P(sol) polarization free energy of solvation -31.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds