Wall clock time and date at job start Mon Mar 30 2020 02:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 115.56757 * 2 1 4 4 C 1.53081 * 117.49227 * 145.70996 * 2 1 3 5 5 C 1.53000 * 117.49905 * 214.31262 * 2 1 3 6 6 H 1.09005 * 117.49783 * 0.02562 * 5 2 1 7 7 C 1.50696 * 117.50244 * 145.02269 * 5 2 1 8 8 O 1.21281 * 119.99889 * 359.91169 * 7 5 2 9 9 N 1.34779 * 120.00222 * 179.91243 * 7 5 2 10 10 C 1.46493 * 120.00069 * 179.97438 * 9 7 5 11 11 C 1.50703 * 109.47194 * 180.02562 * 10 9 7 12 12 C 1.38322 * 119.96907 * 89.99998 * 11 10 9 13 13 C 1.38275 * 120.13916 * 180.02562 * 12 11 10 14 14 C 1.38116 * 120.07038 * 359.97438 * 13 12 11 15 15 C 1.38852 * 119.93228 * 0.02562 * 14 13 12 16 16 O 1.35751 * 120.07364 * 179.97438 * 15 14 13 17 17 C 1.34832 * 116.99677 * 354.48505 * 16 15 14 18 18 H 1.07999 * 120.00031 * 5.06419 * 17 16 15 19 19 C 1.38656 * 120.00253 * 185.05374 * 17 16 15 20 20 N 1.31565 * 119.99758 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00269 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.46957 * 60.00409 * 21 19 17 23 23 H 1.48502 * 109.46840 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47011 * 300.00201 * 21 19 17 25 25 C 1.38082 * 119.96422 * 270.02226 * 11 10 9 26 26 H 1.08997 * 109.47341 * 205.68848 * 1 2 3 27 27 H 1.09005 * 109.47009 * 325.69308 * 1 2 3 28 28 H 1.09001 * 109.46969 * 85.68599 * 1 2 3 29 29 H 1.08999 * 117.49056 * 0.02562 * 4 2 1 30 30 H 1.09000 * 117.53366 * 214.94946 * 4 2 1 31 31 H 0.97002 * 119.99803 * 359.97438 * 9 7 5 32 32 H 1.09000 * 109.47587 * 60.00007 * 10 9 7 33 33 H 1.09001 * 109.47586 * 299.99702 * 10 9 7 34 34 H 1.08000 * 119.92941 * 0.02562 * 12 11 10 35 35 H 1.08009 * 119.96415 * 179.72072 * 13 12 11 36 36 H 1.08000 * 120.03374 * 179.97438 * 14 13 12 37 37 H 0.96993 * 119.99743 * 180.02562 * 20 19 17 38 38 H 1.08004 * 120.03549 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9832 0.0000 4 6 2.2366 -1.1219 0.7650 5 6 2.2364 -1.1210 -0.7650 6 1 1.6111 -1.8582 -1.2687 7 6 3.5292 -0.7812 -1.4608 8 8 3.9709 0.3468 -1.4025 9 7 4.1946 -1.7308 -2.1479 10 6 5.4510 -1.4003 -2.8248 11 6 5.9879 -2.6278 -3.5148 12 6 5.6245 -2.9007 -4.8212 13 6 6.1146 -4.0262 -5.4575 14 6 6.9694 -4.8815 -4.7901 15 6 7.3361 -4.6104 -3.4786 16 8 8.1757 -5.4494 -2.8198 17 6 8.5270 -6.5862 -3.4540 18 1 8.2096 -6.7568 -4.4720 19 6 9.2961 -7.5361 -2.7992 20 7 9.6825 -7.3284 -1.5589 21 14 9.7834 -9.1108 -3.6780 22 1 10.5783 -8.7772 -4.8870 23 1 10.5978 -9.9545 -2.7668 24 1 8.5609 -9.8528 -4.0785 25 6 6.8418 -3.4792 -2.8420 26 1 -0.3634 -0.9261 0.4454 27 1 -0.3633 0.8489 0.5792 28 1 -0.3633 0.0773 -1.0248 29 1 1.6111 -1.8597 1.2676 30 1 3.1720 -0.8771 1.2683 31 1 3.8414 -2.6330 -2.1942 32 1 6.1770 -1.0483 -2.0918 33 1 5.2715 -0.6184 -3.5628 34 1 4.9565 -2.2332 -5.3453 35 1 5.8254 -4.2390 -6.4762 36 1 7.3515 -5.7607 -5.2876 37 1 10.2208 -7.9928 -1.1009 38 1 7.1253 -3.2656 -1.8220 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113105923.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:48 Heat of formation + Delta-G solvation = -44.541465 kcal Electronic energy + Delta-G solvation = -19891.018513 eV Core-core repulsion = 16698.780187 eV Total energy + Delta-G solvation = -3192.238326 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.20324 -40.68995 -38.63056 -37.70400 -35.76438 -34.29355 -32.31977 -30.82533 -29.64083 -27.73201 -27.04490 -24.53898 -23.27115 -22.43490 -21.81741 -21.02360 -19.61347 -18.94469 -18.25640 -17.08547 -16.83241 -16.58545 -16.17280 -16.03551 -15.59772 -15.48263 -15.09148 -14.80418 -14.34210 -14.13480 -13.96820 -13.71511 -13.65558 -13.35940 -13.04228 -12.91308 -12.55828 -12.39119 -12.31144 -12.28408 -12.14414 -11.35206 -11.23605 -11.09276 -10.89728 -10.78920 -10.16287 -9.77338 -9.05061 -8.47529 -6.16412 0.36420 0.68944 1.35635 1.45268 1.45919 1.51797 2.15723 2.20174 2.82322 2.87482 3.16227 3.36724 3.69537 3.80025 3.82560 3.87577 4.07456 4.20290 4.29157 4.38384 4.43010 4.50925 4.62744 4.71013 4.77922 4.87952 4.96170 4.99696 5.05331 5.10698 5.21924 5.23655 5.33607 5.44512 5.60585 5.68810 5.69972 6.00662 6.14731 6.50848 6.97040 7.17850 7.76940 8.75380 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.025898 B = 0.003211 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.907260 B = 8716.936777 C = 9270.466515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.124 4.124 3 H 0.094 0.906 4 C -0.144 4.144 5 C -0.196 4.196 6 H 0.149 0.851 7 C 0.537 3.463 8 O -0.588 6.588 9 N -0.710 5.710 10 C 0.173 3.827 11 C -0.059 4.059 12 C -0.169 4.169 13 C -0.068 4.068 14 C -0.234 4.234 15 C 0.113 3.887 16 O -0.232 6.232 17 C -0.414 4.414 18 H 0.104 0.896 19 C -0.023 4.023 20 N -0.921 5.921 21 Si 1.018 2.982 22 H -0.257 1.257 23 H -0.274 1.274 24 H -0.256 1.256 25 C -0.182 4.182 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.130 0.870 30 H 0.084 0.916 31 H 0.413 0.587 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.122 0.878 37 H 0.273 0.727 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.172 8.352 -2.274 19.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.142 4.142 3 H 0.113 0.887 4 C -0.181 4.181 5 C -0.217 4.217 6 H 0.167 0.833 7 C 0.325 3.675 8 O -0.469 6.469 9 N -0.361 5.361 10 C 0.050 3.950 11 C -0.060 4.060 12 C -0.188 4.188 13 C -0.086 4.086 14 C -0.254 4.254 15 C 0.063 3.937 16 O -0.139 6.139 17 C -0.490 4.490 18 H 0.121 0.879 19 C -0.220 4.220 20 N -0.559 5.559 21 Si 0.837 3.163 22 H -0.182 1.182 23 H -0.198 1.198 24 H -0.180 1.180 25 C -0.202 4.202 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.148 0.852 30 H 0.103 0.897 31 H 0.249 0.751 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.166 0.834 35 H 0.168 0.832 36 H 0.140 0.860 37 H 0.082 0.918 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -16.620 9.068 -1.862 19.025 hybrid contribution 0.856 -1.186 -0.119 1.468 sum -15.764 7.882 -1.981 17.736 Atomic orbital electron populations 1.21402 0.90097 1.03323 1.02721 1.22428 0.96683 0.93945 1.01190 0.88732 1.23219 1.02939 1.01848 0.90101 1.22380 0.96424 1.06479 0.96398 0.83310 1.20276 0.85466 0.83993 0.77718 1.90662 1.70131 1.22853 1.63222 1.45984 1.23684 1.14039 1.52391 1.20042 0.85367 0.93855 0.95784 1.19431 0.96764 0.94951 0.94804 1.20991 1.04152 0.99363 0.94278 1.21168 0.94309 0.93079 1.00062 1.21385 1.05409 1.03713 0.94885 1.19845 0.90176 0.91403 0.92305 1.83950 1.56025 1.30046 1.43842 1.21798 1.34068 0.94073 0.99063 0.87864 1.26597 0.96126 1.02667 0.96636 1.70183 1.36049 1.37082 1.12623 0.84652 0.79026 0.74942 0.77649 1.18159 1.19833 1.17992 1.20211 1.03818 0.95878 1.00288 0.90897 0.90996 0.91599 0.85218 0.89729 0.75060 0.92112 0.89563 0.83432 0.83218 0.86036 0.91849 0.87591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.37 10.19 71.98 0.73 -0.63 16 2 C -0.12 -2.17 5.92 -10.77 -0.06 -2.24 16 3 H 0.09 2.09 7.67 -2.39 -0.02 2.07 16 4 C -0.14 -2.43 9.88 30.62 0.30 -2.12 16 5 C -0.20 -3.68 5.91 -11.54 -0.07 -3.75 16 6 H 0.15 2.00 8.14 -2.38 -0.02 1.98 16 7 C 0.54 14.25 7.61 87.66 0.67 14.92 16 8 O -0.59 -20.21 16.26 -3.03 -0.05 -20.26 16 9 N -0.71 -17.74 5.55 -466.80 -2.59 -20.33 16 10 C 0.17 4.86 5.80 85.64 0.50 5.35 16 11 C -0.06 -1.88 5.25 -19.88 -0.10 -1.99 16 12 C -0.17 -4.80 9.70 22.30 0.22 -4.58 16 13 C -0.07 -2.13 10.04 22.25 0.22 -1.90 16 14 C -0.23 -9.60 9.17 22.39 0.21 -9.40 16 15 C 0.11 5.43 6.65 22.58 0.15 5.58 16 16 O -0.23 -13.70 9.76 -22.77 -0.22 -13.92 16 17 C -0.41 -23.58 9.49 67.92 0.64 -22.94 16 18 H 0.10 5.33 5.20 -2.91 -0.02 5.31 16 19 C -0.02 -1.27 5.49 84.83 0.47 -0.80 16 20 N -0.92 -56.10 13.67 21.61 0.30 -55.80 16 21 Si 1.02 41.95 29.55 68.60 2.03 43.98 16 22 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 23 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 24 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 25 C -0.18 -7.50 9.65 22.39 0.22 -7.29 16 26 H 0.07 0.65 7.90 -2.39 -0.02 0.63 16 27 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 29 H 0.13 1.53 8.05 -2.39 -0.02 1.51 16 30 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.41 8.93 8.46 -92.71 -0.78 8.15 16 32 H 0.06 1.88 8.09 -2.39 -0.02 1.86 16 33 H 0.09 2.24 8.08 -2.39 -0.02 2.23 16 34 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 35 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 36 H 0.12 5.05 5.64 -2.91 -0.02 5.04 16 37 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 38 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -73.05 330.99 3.84 -69.22 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 0.29 Total: 28.91 kcal Atomic # 6 Polarization: -35.88 SS G_CDS: 4.08 Total: -31.79 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: -2.29 Total: -76.14 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -0.27 Total: -34.18 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -73.05 3.84 -69.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113105923.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.675 kcal (2) G-P(sol) polarization free energy of solvation -73.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds