Wall clock time and date at job start Mon Mar 30 2020 02:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 115.56547 * 2 1 4 4 C 1.52995 * 117.50219 * 145.69459 * 2 1 3 5 5 C 1.52997 * 60.00439 * 107.48635 * 4 2 1 6 6 H 1.08999 * 117.50018 * 107.48661 * 5 4 2 7 7 C 1.50697 * 117.50179 * 252.49357 * 5 4 2 8 8 O 1.21281 * 120.00517 * 68.73937 * 7 5 4 9 9 N 1.34779 * 119.99899 * 248.74589 * 7 5 4 10 10 C 1.46502 * 120.00351 * 179.97438 * 9 7 5 11 11 C 1.50698 * 109.47203 * 179.97438 * 10 9 7 12 12 C 1.38326 * 119.96181 * 269.71917 * 11 10 9 13 13 C 1.38280 * 120.13489 * 179.76814 * 12 11 10 14 14 C 1.38117 * 120.06749 * 0.51224 * 13 12 11 15 15 C 1.38859 * 119.93271 * 359.74181 * 14 13 12 16 16 O 1.35756 * 120.06681 * 179.97438 * 15 14 13 17 17 C 1.34827 * 117.00293 * 354.48884 * 16 15 14 18 18 H 1.08004 * 119.99759 * 5.06008 * 17 16 15 19 19 C 1.38646 * 120.00194 * 185.05486 * 17 16 15 20 20 N 1.31559 * 119.99923 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00281 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.46837 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.46980 * 120.00038 * 21 19 17 24 24 H 1.48502 * 109.47094 * 240.00168 * 21 19 17 25 25 C 1.38080 * 119.96453 * 90.00105 * 11 10 9 26 26 H 1.08992 * 109.47084 * 205.68950 * 1 2 3 27 27 H 1.09008 * 109.46795 * 325.68626 * 1 2 3 28 28 H 1.08993 * 109.47625 * 85.68165 * 1 2 3 29 29 H 1.09004 * 117.49816 * 359.97438 * 4 2 1 30 30 H 1.08995 * 117.50151 * 214.97780 * 4 2 1 31 31 H 0.97002 * 119.99502 * 359.97438 * 9 7 5 32 32 H 1.09004 * 109.46854 * 300.00067 * 10 9 7 33 33 H 1.09001 * 109.46711 * 59.99430 * 10 9 7 34 34 H 1.08001 * 119.93136 * 0.02562 * 12 11 10 35 35 H 1.07995 * 119.96399 * 180.25891 * 13 12 11 36 36 H 1.08002 * 120.03590 * 179.76595 * 14 13 12 37 37 H 0.97000 * 120.00049 * 180.02562 * 20 19 17 38 38 H 1.07994 * 120.03681 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2365 -1.1210 0.7648 5 6 2.2364 -1.1210 -0.7651 6 1 3.1715 -0.8751 -1.2685 7 6 1.3723 -2.1408 -1.4610 8 8 0.1641 -2.0527 -1.4032 9 7 1.9422 -3.1510 -2.1475 10 6 1.1023 -4.1428 -2.8236 11 6 1.9783 -5.1568 -3.5130 12 6 2.3762 -4.9501 -4.8216 13 6 3.1839 -5.8758 -5.4561 14 6 3.5874 -7.0154 -4.7880 15 6 3.1854 -7.2283 -3.4761 16 8 3.5799 -8.3477 -2.8170 17 6 4.2650 -9.2666 -3.5269 18 1 4.5476 -9.0590 -4.5484 19 6 4.6068 -10.4780 -2.9456 20 7 4.2622 -10.7310 -1.7014 21 14 5.5567 -11.7510 -3.9289 22 1 5.8202 -11.2268 -5.2930 23 1 6.8461 -12.0389 -3.2509 24 1 4.7581 -12.9993 -4.0246 25 6 2.3783 -6.2941 -2.8397 26 1 -0.3633 -0.9260 0.4455 27 1 -0.3633 0.8489 0.5794 28 1 -0.3634 0.0774 -1.0246 29 1 1.6113 -1.8583 1.2684 30 1 3.1715 -0.8752 1.2681 31 1 2.9086 -3.2213 -2.1939 32 1 0.4719 -4.6456 -2.0901 33 1 0.4740 -3.6442 -3.5616 34 1 2.0586 -4.0618 -5.3474 35 1 3.4963 -5.7096 -6.4764 36 1 4.2152 -7.7399 -5.2854 37 1 4.5017 -11.5784 -1.2945 38 1 2.0639 -6.4569 -1.8194 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113105928.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:54 Heat of formation + Delta-G solvation = -20.383974 kcal Electronic energy + Delta-G solvation = -20052.910179 eV Core-core repulsion = 16861.719401 eV Total energy + Delta-G solvation = -3191.190779 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.13972 -39.12955 -37.18906 -36.42056 -34.45161 -32.35571 -30.92312 -29.23275 -28.59860 -26.34204 -25.28254 -23.52238 -21.73075 -21.23649 -20.79620 -19.91640 -17.82159 -17.25172 -16.96333 -15.73439 -15.51483 -15.24219 -14.94171 -14.42319 -14.33084 -13.92349 -13.64812 -13.46824 -13.13562 -12.74393 -12.63810 -12.42934 -12.35978 -12.12511 -11.69331 -11.62052 -11.39726 -10.96594 -10.83715 -10.71777 -10.47886 -10.39804 -10.23084 -9.59067 -9.42517 -8.96012 -8.91130 -8.25871 -7.35081 -6.51098 -4.10677 1.88281 2.24653 2.52448 3.07646 3.09941 3.15447 3.32396 3.68972 3.90837 4.44916 4.49554 4.68690 4.71643 4.91135 5.01991 5.05686 5.20963 5.26739 5.50252 5.54795 5.64668 5.72780 5.76354 5.82604 5.87760 5.92129 5.99539 6.05889 6.23181 6.38232 6.52987 6.54622 6.79524 6.97647 7.16663 7.25195 7.33582 7.59746 7.69740 7.93124 8.29676 8.94367 9.62867 10.66726 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.029895 B = 0.003230 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.402252 B = 8667.333774 C = 9214.179853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.121 4.121 3 H 0.109 0.891 4 C -0.151 4.151 5 C -0.193 4.193 6 H 0.122 0.878 7 C 0.540 3.460 8 O -0.541 6.541 9 N -0.717 5.717 10 C 0.168 3.832 11 C -0.073 4.073 12 C -0.195 4.195 13 C -0.076 4.076 14 C -0.226 4.226 15 C 0.151 3.849 16 O -0.177 6.177 17 C -0.393 4.393 18 H 0.093 0.907 19 C 0.040 3.960 20 N -0.861 5.861 21 Si 0.941 3.059 22 H -0.267 1.267 23 H -0.275 1.275 24 H -0.275 1.275 25 C -0.171 4.171 26 H 0.064 0.936 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.403 0.597 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.128 0.872 37 H 0.270 0.730 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.668 16.252 -0.133 16.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.139 4.139 3 H 0.127 0.873 4 C -0.189 4.189 5 C -0.214 4.214 6 H 0.140 0.860 7 C 0.326 3.674 8 O -0.419 6.419 9 N -0.368 5.368 10 C 0.046 3.954 11 C -0.074 4.074 12 C -0.215 4.215 13 C -0.094 4.094 14 C -0.245 4.245 15 C 0.097 3.903 16 O -0.080 6.080 17 C -0.469 4.469 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.495 5.495 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.191 4.191 26 H 0.083 0.917 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.238 0.762 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.146 0.854 37 H 0.080 0.920 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.556 16.015 0.305 16.221 hybrid contribution 1.197 -0.841 -0.720 1.631 sum -1.359 15.174 -0.414 15.241 Atomic orbital electron populations 1.21358 0.91512 1.01378 1.02566 1.22362 0.96596 0.93454 1.01516 0.87294 1.23085 1.03058 1.01816 0.90908 1.22293 1.02092 1.01153 0.95904 0.86014 1.19664 0.88102 0.81245 0.78352 1.90689 1.14530 1.75101 1.61605 1.46113 1.10842 1.27045 1.52792 1.20145 0.91799 0.87788 0.95715 1.19271 0.98988 0.94724 0.94381 1.20480 1.04988 1.00952 0.95065 1.20745 0.96538 0.93627 0.98513 1.21245 1.07119 1.00221 0.95957 1.19321 0.91945 0.88377 0.90675 1.83982 1.63292 1.23994 1.36718 1.21373 1.33356 0.94654 0.97540 0.88980 1.25301 0.97660 0.97205 0.96320 1.70046 1.43338 1.24173 1.11977 0.85639 0.78857 0.79764 0.79123 1.19088 1.20100 1.20086 1.20086 1.03316 0.95033 1.00655 0.91696 0.93450 0.91388 0.88151 0.87872 0.76225 0.90919 0.90993 0.87520 0.87274 0.85442 0.91985 0.86413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 8.43 37.16 0.31 -0.88 16 2 C -0.12 -1.14 6.41 -90.62 -0.58 -1.72 16 3 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.15 -1.39 9.88 -26.73 -0.26 -1.65 16 5 C -0.19 -1.97 6.19 -91.77 -0.57 -2.54 16 6 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 7 C 0.54 7.25 7.59 -10.99 -0.08 7.16 16 8 O -0.54 -8.79 13.11 5.56 0.07 -8.72 16 9 N -0.72 -9.41 5.55 -61.47 -0.34 -9.75 16 10 C 0.17 2.47 5.80 -5.19 -0.03 2.44 16 11 C -0.07 -1.23 5.25 -104.65 -0.55 -1.78 16 12 C -0.20 -3.18 9.70 -39.53 -0.38 -3.57 16 13 C -0.08 -1.32 10.04 -39.61 -0.40 -1.72 16 14 C -0.23 -4.70 9.17 -39.40 -0.36 -5.06 16 15 C 0.15 3.50 6.65 -39.11 -0.26 3.24 16 16 O -0.18 -4.91 9.76 0.04 0.00 -4.91 16 17 C -0.39 -10.73 9.49 30.88 0.29 -10.44 16 18 H 0.09 2.32 5.20 -52.48 -0.27 2.05 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 20 N -0.86 -24.85 13.67 55.48 0.76 -24.09 16 21 Si 0.94 20.11 29.55 -169.99 -5.02 15.09 16 22 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 23 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 25 C -0.17 -3.45 9.65 -39.40 -0.38 -3.83 16 26 H 0.06 0.81 7.02 -51.93 -0.36 0.44 16 27 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 28 H 0.07 0.83 7.26 -51.93 -0.38 0.45 16 29 H 0.10 1.02 8.05 -51.93 -0.42 0.60 16 30 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.40 4.75 8.46 -40.82 -0.35 4.41 16 32 H 0.07 1.12 8.09 -51.93 -0.42 0.70 16 33 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 34 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 36 H 0.13 2.66 5.64 -52.49 -0.30 2.37 16 37 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 325.53 15.07 4.91 4.91 Total: -1.00 -30.76 325.53 -7.98 -38.74 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -5.01 Total: 8.10 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -3.35 Total: -19.37 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.42 Total: -33.84 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.07 Total: -13.63 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.76 -7.98 -38.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113105928.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.361 kcal (2) G-P(sol) polarization free energy of solvation -30.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds