Wall clock time and date at job start Mon Mar 30 2020 02:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 115.56547 * 2 1 4 4 C 1.52995 * 117.50219 * 145.69459 * 2 1 3 5 5 C 1.52997 * 60.00439 * 107.48635 * 4 2 1 6 6 H 1.08999 * 117.50018 * 107.48661 * 5 4 2 7 7 C 1.50697 * 117.50179 * 252.49357 * 5 4 2 8 8 O 1.21281 * 120.00517 * 68.73937 * 7 5 4 9 9 N 1.34779 * 119.99899 * 248.74589 * 7 5 4 10 10 C 1.46502 * 120.00351 * 179.97438 * 9 7 5 11 11 C 1.50698 * 109.47203 * 179.97438 * 10 9 7 12 12 C 1.38326 * 119.96181 * 269.71917 * 11 10 9 13 13 C 1.38280 * 120.13489 * 179.76814 * 12 11 10 14 14 C 1.38117 * 120.06749 * 0.51224 * 13 12 11 15 15 C 1.38859 * 119.93271 * 359.74181 * 14 13 12 16 16 O 1.35756 * 120.06681 * 179.97438 * 15 14 13 17 17 C 1.34827 * 117.00293 * 354.48884 * 16 15 14 18 18 H 1.08004 * 119.99759 * 5.06008 * 17 16 15 19 19 C 1.38646 * 120.00194 * 185.05486 * 17 16 15 20 20 N 1.31559 * 119.99923 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00281 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.46837 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.46980 * 120.00038 * 21 19 17 24 24 H 1.48502 * 109.47094 * 240.00168 * 21 19 17 25 25 C 1.38080 * 119.96453 * 90.00105 * 11 10 9 26 26 H 1.08992 * 109.47084 * 205.68950 * 1 2 3 27 27 H 1.09008 * 109.46795 * 325.68626 * 1 2 3 28 28 H 1.08993 * 109.47625 * 85.68165 * 1 2 3 29 29 H 1.09004 * 117.49816 * 359.97438 * 4 2 1 30 30 H 1.08995 * 117.50151 * 214.97780 * 4 2 1 31 31 H 0.97002 * 119.99502 * 359.97438 * 9 7 5 32 32 H 1.09004 * 109.46854 * 300.00067 * 10 9 7 33 33 H 1.09001 * 109.46711 * 59.99430 * 10 9 7 34 34 H 1.08001 * 119.93136 * 0.02562 * 12 11 10 35 35 H 1.07995 * 119.96399 * 180.25891 * 13 12 11 36 36 H 1.08002 * 120.03590 * 179.76595 * 14 13 12 37 37 H 0.97000 * 120.00049 * 180.02562 * 20 19 17 38 38 H 1.07994 * 120.03681 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2365 -1.1210 0.7648 5 6 2.2364 -1.1210 -0.7651 6 1 3.1715 -0.8751 -1.2685 7 6 1.3723 -2.1408 -1.4610 8 8 0.1641 -2.0527 -1.4032 9 7 1.9422 -3.1510 -2.1475 10 6 1.1023 -4.1428 -2.8236 11 6 1.9783 -5.1568 -3.5130 12 6 2.3762 -4.9501 -4.8216 13 6 3.1839 -5.8758 -5.4561 14 6 3.5874 -7.0154 -4.7880 15 6 3.1854 -7.2283 -3.4761 16 8 3.5799 -8.3477 -2.8170 17 6 4.2650 -9.2666 -3.5269 18 1 4.5476 -9.0590 -4.5484 19 6 4.6068 -10.4780 -2.9456 20 7 4.2622 -10.7310 -1.7014 21 14 5.5567 -11.7510 -3.9289 22 1 5.8202 -11.2268 -5.2930 23 1 6.8461 -12.0389 -3.2509 24 1 4.7581 -12.9993 -4.0246 25 6 2.3783 -6.2941 -2.8397 26 1 -0.3633 -0.9260 0.4455 27 1 -0.3633 0.8489 0.5794 28 1 -0.3634 0.0774 -1.0246 29 1 1.6113 -1.8583 1.2684 30 1 3.1715 -0.8752 1.2681 31 1 2.9086 -3.2213 -2.1939 32 1 0.4719 -4.6456 -2.0901 33 1 0.4740 -3.6442 -3.5616 34 1 2.0586 -4.0618 -5.3474 35 1 3.4963 -5.7096 -6.4764 36 1 4.2152 -7.7399 -5.2854 37 1 4.5017 -11.5784 -1.2945 38 1 2.0639 -6.4569 -1.8194 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113105928.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:53 Heat of formation + Delta-G solvation = -39.634035 kcal Electronic energy + Delta-G solvation = -20053.744924 eV Core-core repulsion = 16861.719401 eV Total energy + Delta-G solvation = -3192.025524 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.23710 -40.71760 -38.63952 -37.53364 -35.70287 -34.29556 -32.32517 -30.82445 -29.51521 -27.74628 -27.06744 -24.56112 -23.26932 -22.44286 -21.95768 -20.96908 -19.54682 -18.85106 -18.07104 -16.94951 -16.77661 -16.57447 -16.33484 -16.06866 -15.63086 -15.51973 -15.08415 -14.71678 -14.35185 -14.07221 -13.90298 -13.69847 -13.54558 -13.36246 -13.13068 -13.02156 -12.56582 -12.38040 -12.35172 -12.29220 -12.09068 -11.22597 -11.17899 -11.03914 -10.83864 -10.63231 -10.09832 -9.76053 -9.04903 -8.48002 -6.16709 0.36901 0.68804 1.35519 1.43364 1.51848 1.53663 2.16579 2.23387 2.83068 2.89573 3.14451 3.38808 3.67468 3.79379 3.87859 3.95645 4.07827 4.20970 4.29511 4.39498 4.49804 4.51225 4.65305 4.71434 4.83732 4.91214 4.99227 5.00254 5.06477 5.11016 5.19065 5.23870 5.37908 5.57902 5.60952 5.69016 5.70157 6.00744 6.14922 6.55895 6.96879 7.24794 7.76872 8.75333 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.029895 B = 0.003230 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.402252 B = 8667.333774 C = 9214.179853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.118 4.118 3 H 0.138 0.862 4 C -0.147 4.147 5 C -0.200 4.200 6 H 0.149 0.851 7 C 0.535 3.465 8 O -0.574 6.574 9 N -0.713 5.713 10 C 0.174 3.826 11 C -0.058 4.058 12 C -0.169 4.169 13 C -0.069 4.069 14 C -0.235 4.235 15 C 0.113 3.887 16 O -0.233 6.233 17 C -0.412 4.412 18 H 0.104 0.896 19 C -0.023 4.023 20 N -0.921 5.921 21 Si 1.019 2.981 22 H -0.250 1.250 23 H -0.269 1.269 24 H -0.270 1.270 25 C -0.183 4.183 26 H 0.040 0.960 27 H 0.066 0.934 28 H 0.049 0.951 29 H 0.083 0.917 30 H 0.129 0.871 31 H 0.411 0.589 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.121 0.879 37 H 0.272 0.728 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.835 18.873 -2.168 19.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.137 4.137 3 H 0.156 0.844 4 C -0.184 4.184 5 C -0.220 4.220 6 H 0.167 0.833 7 C 0.323 3.677 8 O -0.454 6.454 9 N -0.364 5.364 10 C 0.051 3.949 11 C -0.059 4.059 12 C -0.188 4.188 13 C -0.087 4.087 14 C -0.254 4.254 15 C 0.063 3.937 16 O -0.139 6.139 17 C -0.488 4.488 18 H 0.121 0.879 19 C -0.221 4.221 20 N -0.559 5.559 21 Si 0.838 3.162 22 H -0.173 1.173 23 H -0.194 1.194 24 H -0.196 1.196 25 C -0.202 4.202 26 H 0.059 0.941 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.101 0.899 30 H 0.147 0.853 31 H 0.247 0.753 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.166 0.834 35 H 0.167 0.833 36 H 0.139 0.861 37 H 0.081 0.919 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.723 18.694 -1.758 18.856 hybrid contribution 0.756 -1.327 -0.156 1.535 sum -0.967 17.368 -1.914 17.500 Atomic orbital electron populations 1.21293 0.92962 1.00933 1.01482 1.22501 0.95570 0.94647 1.00965 0.84436 1.23164 1.03862 1.01192 0.90169 1.22373 1.02661 1.00609 0.96389 0.83326 1.20278 0.88089 0.81476 0.77856 1.90685 1.16168 1.75926 1.62652 1.46034 1.11098 1.26601 1.52681 1.20008 0.91496 0.87638 0.95742 1.19449 0.98032 0.93659 0.94768 1.20994 1.02214 1.01323 0.94249 1.21166 0.95490 0.91938 1.00057 1.21379 1.07270 1.01614 0.95131 1.19844 0.93526 0.88083 0.92250 1.83949 1.65687 1.25847 1.38454 1.21868 1.33542 0.95232 0.98187 0.87873 1.26591 0.98714 0.99312 0.97460 1.70193 1.46261 1.25181 1.14287 0.84525 0.77203 0.76411 0.78054 1.17276 1.19366 1.19556 1.20214 1.03517 0.95936 1.00577 0.94121 0.91525 0.93158 0.89878 0.85262 0.75265 0.92211 0.89627 0.83437 0.83262 0.86110 0.91866 0.87605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.26 8.43 71.98 0.61 -1.65 16 2 C -0.12 -1.93 6.41 -10.79 -0.07 -2.00 16 3 H 0.14 1.50 8.14 -2.39 -0.02 1.48 16 4 C -0.15 -2.37 9.88 30.59 0.30 -2.07 16 5 C -0.20 -3.57 6.19 -11.54 -0.07 -3.64 16 6 H 0.15 1.86 8.14 -2.39 -0.02 1.84 16 7 C 0.53 13.60 7.59 87.66 0.67 14.27 16 8 O -0.57 -18.42 13.11 -3.03 -0.04 -18.46 16 9 N -0.71 -17.40 5.55 -466.78 -2.59 -19.99 16 10 C 0.17 4.84 5.80 85.63 0.50 5.34 16 11 C -0.06 -1.86 5.25 -19.88 -0.10 -1.97 16 12 C -0.17 -4.79 9.70 22.30 0.22 -4.58 16 13 C -0.07 -2.14 10.04 22.25 0.22 -1.92 16 14 C -0.23 -9.63 9.17 22.39 0.21 -9.43 16 15 C 0.11 5.44 6.65 22.58 0.15 5.59 16 16 O -0.23 -13.75 9.76 -22.77 -0.22 -13.97 16 17 C -0.41 -23.53 9.49 67.92 0.64 -22.88 16 18 H 0.10 5.36 5.20 -2.91 -0.02 5.34 16 19 C -0.02 -1.31 5.49 84.83 0.47 -0.84 16 20 N -0.92 -56.12 13.67 21.61 0.30 -55.83 16 21 Si 1.02 42.14 29.55 68.60 2.03 44.17 16 22 H -0.25 -9.44 7.11 99.48 0.71 -8.74 16 23 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 24 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 25 C -0.18 -7.52 9.65 22.39 0.22 -7.31 16 26 H 0.04 1.02 7.02 -2.39 -0.02 1.00 16 27 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 28 H 0.05 1.20 7.26 -2.39 -0.02 1.19 16 29 H 0.08 1.64 8.05 -2.38 -0.02 1.62 16 30 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.41 8.75 8.46 -92.71 -0.78 7.97 16 32 H 0.06 1.84 8.09 -2.39 -0.02 1.82 16 33 H 0.09 2.20 8.08 -2.39 -0.02 2.18 16 34 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 35 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 36 H 0.12 5.06 5.64 -2.91 -0.02 5.04 16 37 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 38 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -72.23 325.53 3.71 -68.51 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: 0.29 Total: 28.66 kcal Atomic # 6 Polarization: -37.04 SS G_CDS: 3.95 Total: -33.09 kcal Atomic # 7 Polarization: -73.52 SS G_CDS: -2.29 Total: -75.82 kcal Atomic # 8 Polarization: -32.17 SS G_CDS: -0.26 Total: -32.43 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -72.23 3.71 -68.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113105928.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.881 kcal (2) G-P(sol) polarization free energy of solvation -72.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds