Wall clock time and date at job start Mon Mar 30 2020 02:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46941 * 2 1 4 4 C 1.50707 * 109.46929 * 240.00317 * 2 1 3 5 5 O 1.21287 * 119.99512 * 239.99944 * 4 2 1 6 6 N 1.34777 * 120.00021 * 60.00246 * 4 2 1 7 7 C 1.39922 * 119.99912 * 174.78889 * 6 4 2 8 8 C 1.38967 * 120.03668 * 326.31962 * 7 6 4 9 9 C 1.38151 * 120.06888 * 180.02562 * 8 7 6 10 10 C 1.38172 * 120.13799 * 359.70347 * 9 8 7 11 11 C 1.38912 * 120.06749 * 0.54841 * 10 9 8 12 12 O 1.35755 * 120.02931 * 179.74616 * 11 10 9 13 13 C 1.34835 * 116.99404 * 173.82738 * 12 11 10 14 14 H 1.07998 * 120.00648 * 354.59515 * 13 12 11 15 15 C 1.38654 * 119.99667 * 174.60196 * 13 12 11 16 16 N 1.31560 * 120.00046 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 120.00057 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47192 * 90.00195 * 17 15 13 19 19 H 1.48500 * 109.47219 * 210.00216 * 17 15 13 20 20 H 1.48503 * 109.47111 * 330.00174 * 17 15 13 21 21 C 1.38714 * 120.03629 * 146.34347 * 7 6 4 22 22 C 1.53002 * 109.47162 * 120.00356 * 2 1 3 23 23 C 1.52994 * 117.49772 * 248.62402 * 22 2 1 24 24 C 1.52997 * 117.49670 * 179.97438 * 22 2 1 25 25 H 1.08994 * 109.46727 * 300.00126 * 1 2 3 26 26 H 1.09002 * 109.46907 * 59.99452 * 1 2 3 27 27 H 1.09001 * 109.47189 * 179.97438 * 1 2 3 28 28 H 0.96995 * 119.99980 * 354.78782 * 6 4 2 29 29 H 1.08001 * 119.96492 * 0.02562 * 8 7 6 30 30 H 1.07999 * 119.93459 * 179.97438 * 9 8 7 31 31 H 1.08003 * 119.96836 * 180.30070 * 10 9 8 32 32 H 0.97002 * 119.99995 * 179.97438 * 16 15 13 33 33 H 1.08002 * 120.06766 * 359.97438 * 21 7 6 34 34 H 1.09002 * 115.54894 * 34.33103 * 22 2 1 35 35 H 1.09005 * 117.50059 * 359.97438 * 23 22 2 36 36 H 1.09001 * 117.50082 * 145.02009 * 23 22 2 37 37 H 1.09003 * 117.49365 * 214.97506 * 24 22 2 38 38 H 1.08996 * 117.50112 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2306 5 8 2.7296 -1.6965 -1.1193 6 7 1.7068 -0.2498 -2.4547 7 6 2.2604 -0.8421 -3.5950 8 6 3.5543 -1.3478 -3.5578 9 6 4.1017 -1.9322 -4.6835 10 6 3.3630 -2.0215 -5.8478 11 6 2.0710 -1.5133 -5.8929 12 8 1.3478 -1.5968 -7.0388 13 6 0.0600 -1.2017 -6.9798 14 1 -0.3764 -0.9222 -6.0323 15 6 -0.7042 -1.1545 -8.1358 16 7 -1.9609 -0.7695 -8.0783 17 14 0.0506 -1.6374 -9.7749 18 1 -0.1463 -3.0918 -10.0012 19 1 -0.6055 -0.8734 -10.8663 20 1 1.5036 -1.3309 -9.7602 21 6 1.5185 -0.9248 -4.7642 22 6 2.0401 -0.7213 1.2492 23 6 2.7419 0.1225 2.3151 24 6 3.5550 -0.8287 1.4339 25 1 -0.3632 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.0887 0.4922 -2.5450 29 1 4.1324 -1.2837 -2.6478 30 1 5.1076 -2.3241 -4.6522 31 1 3.7920 -2.4834 -6.7248 32 1 -2.4954 -0.7361 -8.8871 33 1 0.5127 -0.5326 -4.7957 34 1 1.4311 -1.5586 1.5901 35 1 2.8407 1.1915 2.1262 36 1 2.5947 -0.1595 3.3577 37 1 3.9425 -1.7362 1.8970 38 1 4.1884 -0.3851 0.6657 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122229096.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:53 Heat of formation + Delta-G solvation = -14.779626 kcal Electronic energy + Delta-G solvation = -20617.105227 eV Core-core repulsion = 17426.157472 eV Total energy + Delta-G solvation = -3190.947756 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.45276 -38.99023 -37.46929 -36.30518 -34.33317 -32.56401 -32.27887 -29.41299 -28.65521 -25.29218 -24.92628 -22.77983 -22.41961 -21.77853 -20.76918 -19.64396 -18.04987 -17.76549 -16.86398 -15.87409 -15.56335 -15.22387 -15.01987 -14.54560 -14.44973 -13.94266 -13.81561 -13.57745 -13.10469 -12.78822 -12.53066 -12.30252 -12.15293 -12.03198 -11.71927 -11.57438 -11.21785 -11.17811 -10.97661 -10.70797 -10.52345 -10.28905 -10.19687 -9.85316 -9.52467 -9.38153 -8.85591 -7.79970 -7.29762 -6.43585 -4.10807 1.89800 2.26919 2.84722 3.15813 3.22333 3.25520 3.39725 3.81903 4.22696 4.35815 4.48235 4.63977 4.70841 4.87608 4.92408 5.04903 5.07295 5.09094 5.31499 5.48764 5.55107 5.62259 5.72373 5.83271 5.89086 5.91547 5.97413 6.00282 6.11753 6.18273 6.20909 6.47872 6.89436 6.93513 7.18677 7.19876 7.55782 7.72353 7.76615 8.01179 8.33749 8.91968 9.54450 10.64131 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.029570 B = 0.003983 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.673725 B = 7028.947216 C = 7858.989112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.079 4.079 3 H 0.098 0.902 4 C 0.513 3.487 5 O -0.512 6.512 6 N -0.671 5.671 7 C 0.181 3.819 8 C -0.199 4.199 9 C -0.065 4.065 10 C -0.201 4.201 11 C 0.174 3.826 12 O -0.216 6.216 13 C -0.389 4.389 14 H 0.104 0.896 15 C 0.064 3.936 16 N -0.881 5.881 17 Si 0.906 3.094 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.259 1.259 21 C -0.245 4.245 22 C -0.134 4.134 23 C -0.184 4.184 24 C -0.156 4.156 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.407 0.593 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.279 0.721 33 H 0.136 0.864 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.886 3.658 15.793 17.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.101 4.101 3 H 0.116 0.884 4 C 0.300 3.700 5 O -0.386 6.386 6 N -0.316 5.316 7 C 0.088 3.912 8 C -0.219 4.219 9 C -0.083 4.083 10 C -0.221 4.221 11 C 0.122 3.878 12 O -0.121 6.121 13 C -0.465 4.465 14 H 0.122 0.878 15 C -0.140 4.140 16 N -0.519 5.519 17 Si 0.731 3.269 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.183 1.183 21 C -0.267 4.267 22 C -0.153 4.153 23 C -0.221 4.221 24 C -0.193 4.193 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.242 0.758 29 H 0.138 0.862 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.089 0.911 33 H 0.153 0.847 34 H 0.125 0.875 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.229 2.932 15.573 17.418 hybrid contribution -0.388 0.267 -0.740 0.877 sum 6.841 3.199 14.833 16.645 Atomic orbital electron populations 1.21778 0.92323 1.03189 1.02862 1.20915 0.97741 0.99849 0.91567 0.88419 1.20699 0.80512 0.84611 0.84175 1.90712 1.36709 1.24763 1.86367 1.43573 1.47255 1.35996 1.04781 1.17442 0.91917 0.96333 0.85506 1.20590 0.94392 1.07729 0.99223 1.20527 0.98509 0.97518 0.91792 1.20240 0.93765 1.08819 0.99294 1.18815 0.90646 0.92461 0.85925 1.83614 1.24177 1.75024 1.29296 1.20726 0.82106 1.45978 0.97692 0.87828 1.24463 0.94811 0.95738 0.98953 1.69646 1.06681 1.45213 1.30318 0.86176 0.80381 0.78925 0.81408 1.19848 1.20853 1.18300 1.20940 1.01848 1.10623 0.93241 1.21929 0.96220 1.01499 0.95630 1.23098 1.05268 0.97515 0.96230 1.22792 0.93558 1.01032 1.01907 0.91149 0.91780 0.91737 0.75793 0.86216 0.86479 0.86403 0.91067 0.84663 0.87463 0.88930 0.88825 0.88828 0.88943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.07 37.16 0.34 -0.94 16 2 C -0.08 -0.82 2.89 -91.77 -0.27 -1.08 16 3 H 0.10 0.84 7.90 -51.93 -0.41 0.43 16 4 C 0.51 7.43 6.76 -10.98 -0.07 7.35 16 5 O -0.51 -9.10 12.78 5.55 0.07 -9.03 16 6 N -0.67 -10.10 5.26 -9.88 -0.05 -10.15 16 7 C 0.18 3.42 6.27 -83.72 -0.52 2.90 16 8 C -0.20 -3.70 8.65 -39.34 -0.34 -4.04 16 9 C -0.06 -1.16 10.03 -39.64 -0.40 -1.56 16 10 C -0.20 -4.07 9.99 -39.36 -0.39 -4.46 16 11 C 0.17 4.04 6.64 -39.14 -0.26 3.78 16 12 O -0.22 -5.68 8.59 0.02 0.00 -5.68 16 13 C -0.39 -10.86 9.90 30.89 0.31 -10.55 16 14 H 0.10 2.94 5.53 -52.49 -0.29 2.65 16 15 C 0.06 1.76 5.49 -17.51 -0.10 1.67 16 16 N -0.88 -25.14 13.96 55.48 0.77 -24.36 16 17 Si 0.91 21.54 28.62 -169.99 -4.86 16.68 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.26 -6.18 7.11 56.52 0.40 -5.78 16 21 C -0.25 -5.26 9.04 -39.21 -0.35 -5.62 16 22 C -0.13 -1.37 4.72 -90.62 -0.43 -1.80 16 23 C -0.18 -1.53 10.18 -26.71 -0.27 -1.81 16 24 C -0.16 -1.64 8.97 -26.71 -0.24 -1.88 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.53 7.46 -51.93 -0.39 0.15 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.41 4.97 8.09 -40.82 -0.33 4.64 16 29 H 0.12 2.17 6.43 -52.49 -0.34 1.83 16 30 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.12 2.19 8.06 -52.48 -0.42 1.77 16 32 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.14 2.99 5.71 -52.49 -0.30 2.69 16 34 H 0.11 1.11 8.11 -51.93 -0.42 0.69 16 35 H 0.09 0.69 8.05 -51.93 -0.42 0.27 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.09 1.06 8.10 -51.93 -0.42 0.64 16 LS Contribution 321.54 15.07 4.85 4.85 Total: -1.00 -31.19 321.54 -7.22 -38.40 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -4.99 Total: 7.34 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -3.00 Total: -18.05 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.72 Total: -34.51 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: 0.07 Total: -14.70 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.86 Total: 16.68 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.19 -7.22 -38.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122229096.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.625 kcal (2) G-P(sol) polarization free energy of solvation -31.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds