Wall clock time and date at job start Mon Mar 30 2020 02:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46941 * 2 1 4 4 C 1.50707 * 109.46929 * 240.00317 * 2 1 3 5 5 O 1.21287 * 119.99512 * 239.99944 * 4 2 1 6 6 N 1.34777 * 120.00021 * 60.00246 * 4 2 1 7 7 C 1.39922 * 119.99912 * 174.78889 * 6 4 2 8 8 C 1.38967 * 120.03668 * 326.31962 * 7 6 4 9 9 C 1.38151 * 120.06888 * 180.02562 * 8 7 6 10 10 C 1.38172 * 120.13799 * 359.70347 * 9 8 7 11 11 C 1.38912 * 120.06749 * 0.54841 * 10 9 8 12 12 O 1.35755 * 120.02931 * 179.74616 * 11 10 9 13 13 C 1.34835 * 116.99404 * 173.82738 * 12 11 10 14 14 H 1.07998 * 120.00648 * 354.59515 * 13 12 11 15 15 C 1.38654 * 119.99667 * 174.60196 * 13 12 11 16 16 N 1.31560 * 120.00046 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 120.00057 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47192 * 90.00195 * 17 15 13 19 19 H 1.48500 * 109.47219 * 210.00216 * 17 15 13 20 20 H 1.48503 * 109.47111 * 330.00174 * 17 15 13 21 21 C 1.38714 * 120.03629 * 146.34347 * 7 6 4 22 22 C 1.53002 * 109.47162 * 120.00356 * 2 1 3 23 23 C 1.52994 * 117.49772 * 248.62402 * 22 2 1 24 24 C 1.52997 * 117.49670 * 179.97438 * 22 2 1 25 25 H 1.08994 * 109.46727 * 300.00126 * 1 2 3 26 26 H 1.09002 * 109.46907 * 59.99452 * 1 2 3 27 27 H 1.09001 * 109.47189 * 179.97438 * 1 2 3 28 28 H 0.96995 * 119.99980 * 354.78782 * 6 4 2 29 29 H 1.08001 * 119.96492 * 0.02562 * 8 7 6 30 30 H 1.07999 * 119.93459 * 179.97438 * 9 8 7 31 31 H 1.08003 * 119.96836 * 180.30070 * 10 9 8 32 32 H 0.97002 * 119.99995 * 179.97438 * 16 15 13 33 33 H 1.08002 * 120.06766 * 359.97438 * 21 7 6 34 34 H 1.09002 * 115.54894 * 34.33103 * 22 2 1 35 35 H 1.09005 * 117.50059 * 359.97438 * 23 22 2 36 36 H 1.09001 * 117.50082 * 145.02009 * 23 22 2 37 37 H 1.09003 * 117.49365 * 214.97506 * 24 22 2 38 38 H 1.08996 * 117.50112 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2306 5 8 2.7296 -1.6965 -1.1193 6 7 1.7068 -0.2498 -2.4547 7 6 2.2604 -0.8421 -3.5950 8 6 3.5543 -1.3478 -3.5578 9 6 4.1017 -1.9322 -4.6835 10 6 3.3630 -2.0215 -5.8478 11 6 2.0710 -1.5133 -5.8929 12 8 1.3478 -1.5968 -7.0388 13 6 0.0600 -1.2017 -6.9798 14 1 -0.3764 -0.9222 -6.0323 15 6 -0.7042 -1.1545 -8.1358 16 7 -1.9609 -0.7695 -8.0783 17 14 0.0506 -1.6374 -9.7749 18 1 -0.1463 -3.0918 -10.0012 19 1 -0.6055 -0.8734 -10.8663 20 1 1.5036 -1.3309 -9.7602 21 6 1.5185 -0.9248 -4.7642 22 6 2.0401 -0.7213 1.2492 23 6 2.7419 0.1225 2.3151 24 6 3.5550 -0.8287 1.4339 25 1 -0.3632 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.0887 0.4922 -2.5450 29 1 4.1324 -1.2837 -2.6478 30 1 5.1076 -2.3241 -4.6522 31 1 3.7920 -2.4834 -6.7248 32 1 -2.4954 -0.7361 -8.8871 33 1 0.5127 -0.5326 -4.7957 34 1 1.4311 -1.5586 1.5901 35 1 2.8407 1.1915 2.1262 36 1 2.5947 -0.1595 3.3577 37 1 3.9425 -1.7362 1.8970 38 1 4.1884 -0.3851 0.6657 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122229096.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:52 Heat of formation + Delta-G solvation = -33.322992 kcal Electronic energy + Delta-G solvation = -20617.909328 eV Core-core repulsion = 17426.157472 eV Total energy + Delta-G solvation = -3191.751856 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.74107 -40.59606 -38.69350 -37.65605 -35.70286 -34.42547 -33.37481 -31.02123 -30.21232 -27.22840 -25.86692 -24.00144 -23.42408 -23.16043 -21.99609 -20.84209 -19.84819 -19.37792 -18.17007 -17.26164 -16.91838 -16.55620 -16.34815 -15.94450 -15.68728 -15.58104 -15.26003 -15.09242 -14.65941 -14.20051 -14.02273 -13.57823 -13.35752 -13.31500 -12.82341 -12.73101 -12.69343 -12.39826 -12.34172 -12.08814 -12.00795 -11.55802 -11.36001 -11.21410 -10.96523 -10.86026 -10.58270 -9.41200 -8.93700 -8.50258 -6.23188 0.36600 0.63154 1.33065 1.36893 1.52871 1.61905 2.00159 2.28706 2.76229 2.97911 3.08769 3.10316 3.56073 3.73349 3.90061 4.09045 4.18515 4.24991 4.30192 4.35203 4.40734 4.55082 4.59865 4.71175 4.84123 4.85294 4.89820 4.96525 5.08485 5.19098 5.29540 5.32755 5.35285 5.39088 5.48821 5.61526 5.74092 5.88805 6.19982 6.45504 6.84099 7.12638 7.57035 8.61010 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.029570 B = 0.003983 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.673725 B = 7028.947216 C = 7858.989112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.069 4.069 3 H 0.123 0.877 4 C 0.511 3.489 5 O -0.546 6.546 6 N -0.667 5.667 7 C 0.183 3.817 8 C -0.193 4.193 9 C -0.053 4.053 10 C -0.204 4.204 11 C 0.140 3.860 12 O -0.240 6.240 13 C -0.399 4.399 14 H 0.082 0.918 15 C 0.013 3.987 16 N -0.921 5.921 17 Si 0.969 3.031 18 H -0.267 1.267 19 H -0.268 1.268 20 H -0.262 1.262 21 C -0.257 4.257 22 C -0.148 4.148 23 C -0.155 4.155 24 C -0.175 4.175 25 H 0.095 0.905 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.420 0.580 29 H 0.131 0.869 30 H 0.159 0.841 31 H 0.134 0.866 32 H 0.285 0.715 33 H 0.119 0.881 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.446 4.156 17.141 19.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.090 4.090 3 H 0.141 0.859 4 C 0.300 3.700 5 O -0.422 6.422 6 N -0.313 5.313 7 C 0.089 3.911 8 C -0.214 4.214 9 C -0.071 4.071 10 C -0.223 4.223 11 C 0.090 3.910 12 O -0.147 6.147 13 C -0.475 4.475 14 H 0.099 0.901 15 C -0.186 4.186 16 N -0.561 5.561 17 Si 0.791 3.209 18 H -0.192 1.192 19 H -0.193 1.193 20 H -0.186 1.186 21 C -0.279 4.279 22 C -0.167 4.167 23 C -0.192 4.192 24 C -0.212 4.212 25 H 0.113 0.887 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.257 0.743 29 H 0.148 0.852 30 H 0.177 0.823 31 H 0.152 0.848 32 H 0.094 0.906 33 H 0.137 0.863 34 H 0.120 0.880 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.108 0.892 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.794 3.453 16.967 19.420 hybrid contribution -0.714 0.103 -0.879 1.137 sum 8.080 3.555 16.088 18.351 Atomic orbital electron populations 1.21804 0.91134 1.02726 1.04339 1.20953 0.98525 1.00382 0.89091 0.85919 1.21570 0.79507 0.84174 0.84746 1.90690 1.38289 1.26381 1.86806 1.43648 1.47380 1.36143 1.04122 1.17534 0.91986 0.95771 0.85853 1.20908 0.94096 1.06549 0.99830 1.20982 0.99903 0.95883 0.90361 1.20541 0.92640 1.08323 1.00819 1.19362 0.91917 0.93943 0.85734 1.83557 1.23412 1.76894 1.30826 1.20680 0.83350 1.46279 0.97238 0.90095 1.25250 0.95212 0.95862 1.02282 1.69722 1.07862 1.47032 1.31503 0.85241 0.79253 0.78916 0.77480 1.19204 1.19260 1.18584 1.20917 1.01503 1.11254 0.94183 1.21984 0.95869 1.02351 0.96488 1.23182 1.01950 0.97791 0.96287 1.22777 0.93615 1.01972 1.02848 0.88653 0.91371 0.93190 0.74264 0.85164 0.82344 0.84795 0.90561 0.86309 0.87997 0.87387 0.87321 0.89217 0.90193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.07 71.98 0.65 -1.58 16 2 C -0.07 -1.26 2.89 -11.54 -0.03 -1.29 16 3 H 0.12 1.68 7.90 -2.39 -0.02 1.66 16 4 C 0.51 14.15 6.76 87.66 0.59 14.75 16 5 O -0.55 -18.91 12.78 -3.05 -0.04 -18.95 16 6 N -0.67 -19.54 5.26 -303.55 -1.60 -21.14 16 7 C 0.18 6.84 6.27 38.14 0.24 7.07 16 8 C -0.19 -6.85 8.65 22.42 0.19 -6.65 16 9 C -0.05 -1.77 10.03 22.23 0.22 -1.55 16 10 C -0.20 -7.97 9.99 22.42 0.22 -7.75 16 11 C 0.14 6.61 6.64 22.56 0.15 6.76 16 12 O -0.24 -12.93 8.59 -22.85 -0.20 -13.13 16 13 C -0.40 -23.21 9.90 67.92 0.67 -22.54 16 14 H 0.08 4.90 5.53 -2.91 -0.02 4.89 16 15 C 0.01 0.72 5.49 84.83 0.47 1.19 16 16 N -0.92 -54.12 13.96 21.61 0.30 -53.81 16 17 Si 0.97 44.95 28.62 68.60 1.96 46.91 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 20 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 21 C -0.26 -11.33 9.04 22.51 0.20 -11.13 16 22 C -0.15 -2.74 4.72 -10.80 -0.05 -2.79 16 23 C -0.16 -2.10 10.18 30.61 0.31 -1.79 16 24 C -0.17 -3.43 8.97 30.61 0.27 -3.15 16 25 H 0.09 1.05 8.14 -2.39 -0.02 1.04 16 26 H 0.07 1.01 7.46 -2.39 -0.02 0.99 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.42 9.96 8.09 -92.71 -0.75 9.21 16 29 H 0.13 4.43 6.43 -2.91 -0.02 4.41 16 30 H 0.16 4.00 8.06 -2.91 -0.02 3.97 16 31 H 0.13 4.75 8.06 -2.91 -0.02 4.73 16 32 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 33 H 0.12 5.58 5.71 -2.91 -0.02 5.56 16 34 H 0.10 1.98 8.11 -2.39 -0.02 1.96 16 35 H 0.11 1.16 8.05 -2.38 -0.02 1.14 16 36 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.09 1.77 8.14 -2.39 -0.02 1.76 16 38 H 0.08 1.75 8.10 -2.39 -0.02 1.73 16 Total: -1.00 -69.31 321.54 4.88 -64.43 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: 0.33 Total: 26.13 kcal Atomic # 6 Polarization: -34.57 SS G_CDS: 4.12 Total: -30.45 kcal Atomic # 7 Polarization: -73.66 SS G_CDS: -1.30 Total: -74.95 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -0.24 Total: -32.07 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.96 Total: 46.91 kcal Total: -69.31 4.88 -64.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122229096.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.107 kcal (2) G-P(sol) polarization free energy of solvation -69.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds