Wall clock time and date at job start Mon Mar 30 2020 02:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47215 * 2 1 4 4 C 1.50699 * 109.47225 * 120.00247 * 2 1 3 5 5 O 1.21293 * 119.99909 * 120.00043 * 4 2 1 6 6 N 1.34779 * 120.00019 * 299.99459 * 4 2 1 7 7 C 1.39926 * 119.99759 * 174.78393 * 6 4 2 8 8 C 1.38955 * 120.04220 * 326.16271 * 7 6 4 9 9 C 1.38159 * 120.07191 * 179.76589 * 8 7 6 10 10 C 1.38171 * 120.13351 * 0.51244 * 9 8 7 11 11 C 1.38912 * 120.07298 * 359.74103 * 10 9 8 12 12 O 1.35743 * 120.03252 * 179.97438 * 11 10 9 13 13 C 1.34833 * 116.99802 * 185.92545 * 12 11 10 14 14 H 1.08005 * 120.00045 * 5.40405 * 13 12 11 15 15 C 1.38652 * 119.99786 * 185.40369 * 13 12 11 16 16 N 1.31560 * 119.99868 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00218 * 0.02562 * 15 13 12 18 18 H 1.48491 * 109.47107 * 89.99881 * 17 15 13 19 19 H 1.48502 * 109.47105 * 210.00283 * 17 15 13 20 20 H 1.48503 * 109.46995 * 329.99875 * 17 15 13 21 21 C 1.38717 * 120.02854 * 146.43986 * 7 6 4 22 22 C 1.53000 * 109.47047 * 240.00093 * 2 1 3 23 23 C 1.52999 * 117.50291 * 179.97438 * 22 2 1 24 24 C 1.52997 * 60.03232 * 252.50049 * 23 22 2 25 25 H 1.09004 * 109.46508 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46731 * 299.99627 * 1 2 3 27 27 H 1.08992 * 109.47180 * 59.99844 * 1 2 3 28 28 H 0.97002 * 119.99720 * 354.79234 * 6 4 2 29 29 H 1.08009 * 119.96485 * 0.02562 * 8 7 6 30 30 H 1.07995 * 119.93326 * 180.22758 * 9 8 7 31 31 H 1.08002 * 119.96086 * 179.72521 * 10 9 8 32 32 H 0.96998 * 120.00013 * 180.02562 * 16 15 13 33 33 H 1.07994 * 120.07335 * 359.95252 * 21 7 6 34 34 H 1.09003 * 115.55032 * 325.67011 * 22 2 1 35 35 H 1.09006 * 117.49533 * 0.02562 * 23 22 2 36 36 H 1.09002 * 117.50002 * 144.99671 * 23 22 2 37 37 H 1.09003 * 117.50160 * 107.49857 * 24 23 22 38 38 H 1.09004 * 117.49326 * 252.51752 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6966 1.1191 6 7 1.7069 -0.2500 2.4546 7 6 2.0808 -0.9696 3.5949 8 6 2.1228 -2.3580 3.5586 9 6 2.4965 -3.0689 4.6827 10 6 2.8194 -2.4026 5.8493 11 6 2.7743 -1.0149 5.8936 12 8 3.0911 -0.3611 7.0403 13 6 2.9092 0.9748 7.0534 14 1 2.4461 1.4651 6.2098 15 6 3.3166 1.7191 8.1500 16 7 3.1386 3.0226 8.1631 17 14 4.1181 0.8712 9.6088 18 1 5.5886 0.8242 9.4073 19 1 3.8124 1.6270 10.8500 20 1 3.5904 -0.5117 9.7288 21 6 2.4043 -0.2977 4.7646 22 6 2.0400 -0.7212 -1.2493 23 6 3.5550 -0.8276 -1.4347 24 6 2.7420 0.1228 -2.3160 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.2133 0.5802 2.5450 29 1 1.8671 -2.8819 2.6493 30 1 2.5320 -4.1478 4.6509 31 1 3.1069 -2.9613 6.7277 32 1 3.4240 3.5433 8.9301 33 1 2.3689 0.7812 4.7965 34 1 1.4310 -1.5585 -1.5903 35 1 4.1884 -0.3841 -0.6664 36 1 3.9429 -1.7351 -1.8974 37 1 2.8406 1.1919 -2.1278 38 1 2.5949 -0.1597 -3.3585 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122229323.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:55 Heat of formation + Delta-G solvation = -33.376241 kcal Electronic energy + Delta-G solvation = -20607.092749 eV Core-core repulsion = 17415.338583 eV Total energy + Delta-G solvation = -3191.754166 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.73785 -40.59745 -38.69839 -37.65768 -35.69670 -34.42517 -33.36582 -31.01270 -30.22922 -27.23714 -25.83736 -24.00109 -23.42889 -23.17696 -22.01493 -20.83533 -19.79608 -19.37211 -18.19374 -17.26210 -17.01831 -16.65727 -16.13300 -16.00962 -15.71634 -15.47469 -15.34315 -15.03467 -14.66860 -14.22323 -14.04568 -13.56210 -13.37643 -13.20004 -12.86357 -12.72907 -12.65011 -12.48063 -12.36336 -12.08728 -11.99209 -11.52188 -11.33186 -11.27148 -10.97917 -10.85952 -10.58375 -9.41259 -8.93510 -8.50494 -6.23190 0.36503 0.63172 1.32577 1.36151 1.52813 1.62735 1.99638 2.28542 2.76812 2.96575 3.07666 3.10697 3.56104 3.71942 3.90989 4.09650 4.18216 4.25322 4.29955 4.35004 4.40808 4.54435 4.59969 4.71496 4.82728 4.87566 4.90023 4.97902 5.07288 5.20312 5.27463 5.33563 5.35465 5.38913 5.48687 5.61662 5.74077 5.88748 6.19959 6.45515 6.84051 7.12670 7.57152 8.60746 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.025911 B = 0.003971 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.358801 B = 7049.752445 C = 7576.061593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.072 4.072 3 H 0.114 0.886 4 C 0.511 3.489 5 O -0.546 6.546 6 N -0.667 5.667 7 C 0.184 3.816 8 C -0.193 4.193 9 C -0.053 4.053 10 C -0.204 4.204 11 C 0.141 3.859 12 O -0.240 6.240 13 C -0.400 4.400 14 H 0.083 0.917 15 C 0.013 3.987 16 N -0.920 5.920 17 Si 0.967 3.033 18 H -0.269 1.269 19 H -0.267 1.267 20 H -0.261 1.261 21 C -0.257 4.257 22 C -0.142 4.142 23 C -0.180 4.180 24 C -0.157 4.157 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.093 0.907 28 H 0.420 0.580 29 H 0.130 0.870 30 H 0.159 0.841 31 H 0.134 0.866 32 H 0.285 0.715 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.156 -6.305 -17.577 19.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.093 4.093 3 H 0.132 0.868 4 C 0.300 3.700 5 O -0.422 6.422 6 N -0.313 5.313 7 C 0.089 3.911 8 C -0.213 4.213 9 C -0.071 4.071 10 C -0.223 4.223 11 C 0.091 3.909 12 O -0.147 6.147 13 C -0.476 4.476 14 H 0.101 0.899 15 C -0.186 4.186 16 N -0.561 5.561 17 Si 0.790 3.210 18 H -0.194 1.194 19 H -0.192 1.192 20 H -0.185 1.185 21 C -0.279 4.279 22 C -0.160 4.160 23 C -0.217 4.217 24 C -0.194 4.194 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.111 0.889 28 H 0.257 0.743 29 H 0.148 0.852 30 H 0.176 0.824 31 H 0.152 0.848 32 H 0.094 0.906 33 H 0.137 0.863 34 H 0.128 0.872 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.122 0.878 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.584 -6.868 -17.409 19.268 hybrid contribution 0.239 0.708 0.863 1.142 sum -4.346 -6.160 -16.546 18.182 Atomic orbital electron populations 1.21770 0.90381 1.03095 1.04275 1.20963 0.99055 1.00141 0.89146 0.86798 1.21558 0.78907 0.84771 0.84722 1.90692 1.37105 1.27563 1.86807 1.43641 1.56612 1.26882 1.04119 1.17522 0.96294 0.91422 0.85824 1.20903 1.08744 0.91825 0.99877 1.20981 0.95066 1.00689 0.90363 1.20536 1.10803 0.90228 1.00768 1.19358 0.93690 0.92577 0.85303 1.83558 1.77260 1.21631 1.32269 1.20698 1.41062 0.79378 1.06460 0.89937 1.25235 0.97059 0.95320 1.00942 1.69717 1.47621 1.05886 1.32872 0.85263 0.78935 0.79153 0.77699 1.19375 1.19156 1.18513 1.20917 1.12829 1.00251 0.93905 1.22015 0.95466 1.02292 0.96238 1.22750 0.93978 1.02105 1.02851 1.23185 1.02106 0.97638 0.96475 0.92423 0.91293 0.88861 0.74277 0.85207 0.82353 0.84831 0.90567 0.86326 0.87180 0.91064 0.89008 0.87822 0.87011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.08 71.98 0.65 -1.22 16 2 C -0.07 -1.32 2.88 -11.54 -0.03 -1.35 16 3 H 0.11 1.76 7.90 -2.39 -0.02 1.74 16 4 C 0.51 14.13 6.76 87.66 0.59 14.72 16 5 O -0.55 -18.86 12.80 -3.07 -0.04 -18.89 16 6 N -0.67 -19.49 5.19 -303.55 -1.58 -21.07 16 7 C 0.18 6.86 6.27 38.14 0.24 7.09 16 8 C -0.19 -6.83 8.65 22.42 0.19 -6.64 16 9 C -0.05 -1.76 10.03 22.23 0.22 -1.54 16 10 C -0.20 -7.98 9.99 22.42 0.22 -7.76 16 11 C 0.14 6.62 6.64 22.56 0.15 6.77 16 12 O -0.24 -12.95 8.58 -22.70 -0.19 -13.14 16 13 C -0.40 -23.20 9.90 67.92 0.67 -22.53 16 14 H 0.08 4.96 5.53 -2.91 -0.02 4.95 16 15 C 0.01 0.75 5.49 84.83 0.47 1.22 16 16 N -0.92 -54.07 13.96 21.61 0.30 -53.77 16 17 Si 0.97 45.02 28.62 68.60 1.96 46.99 16 18 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 19 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 20 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 21 C -0.26 -11.34 9.04 22.51 0.20 -11.14 16 22 C -0.14 -2.59 4.73 -10.77 -0.05 -2.64 16 23 C -0.18 -3.80 8.97 30.59 0.27 -3.52 16 24 C -0.16 -2.29 10.18 30.62 0.31 -1.98 16 25 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.07 0.87 7.69 -2.39 -0.02 0.86 16 27 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.42 9.96 8.40 -92.71 -0.78 9.18 16 29 H 0.13 4.42 6.45 -2.91 -0.02 4.40 16 30 H 0.16 4.00 8.06 -2.91 -0.02 3.98 16 31 H 0.13 4.75 8.06 -2.91 -0.02 4.72 16 32 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 33 H 0.12 5.56 5.71 -2.91 -0.02 5.55 16 34 H 0.11 1.94 8.11 -2.39 -0.02 1.92 16 35 H 0.07 1.80 8.10 -2.38 -0.02 1.78 16 36 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.10 1.32 8.05 -2.39 -0.02 1.30 16 38 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -69.19 322.04 4.87 -64.31 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: 0.30 Total: 26.08 kcal Atomic # 6 Polarization: -34.62 SS G_CDS: 4.12 Total: -30.50 kcal Atomic # 7 Polarization: -73.56 SS G_CDS: -1.27 Total: -74.83 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -0.23 Total: -32.04 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.96 Total: 46.99 kcal Total: -69.19 4.87 -64.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122229323.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.936 kcal (2) G-P(sol) polarization free energy of solvation -69.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds