Wall clock time and date at job start Mon Mar 30 2020 01:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47270 * 2 1 4 4 O 1.42905 * 109.47122 * 119.99844 * 2 1 3 5 5 C 1.35749 * 116.99819 * 155.38234 * 4 2 1 6 6 C 1.39026 * 119.88233 * 5.08836 * 5 4 2 7 7 C 1.37656 * 120.11455 * 179.72620 * 6 5 4 8 8 C 1.40010 * 119.87883 * 0.56572 * 7 6 5 9 9 C 1.46948 * 120.11420 * 179.68050 * 8 7 6 10 10 C 1.35142 * 120.00228 * 0.02815 * 9 8 7 11 11 C 1.41797 * 120.00101 * 179.97438 * 10 9 8 12 12 O 1.21772 * 120.00039 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99883 * 180.02562 * 11 10 9 14 14 C 1.36749 * 120.00127 * 179.97438 * 13 11 10 15 15 H 1.07997 * 119.99671 * 0.02562 * 14 13 11 16 16 C 1.39094 * 119.99975 * 179.97438 * 14 13 11 17 17 N 1.31344 * 119.99853 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00004 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.46894 * 90.00261 * 18 16 14 20 20 H 1.48499 * 109.46720 * 210.00049 * 18 16 14 21 21 H 1.48493 * 109.47391 * 330.00091 * 18 16 14 22 22 C 1.40003 * 119.77040 * 359.70714 * 8 7 6 23 23 C 1.37658 * 119.87890 * 359.97438 * 22 8 7 24 24 H 1.09001 * 109.47183 * 299.99960 * 1 2 3 25 25 H 1.09001 * 109.47170 * 60.00259 * 1 2 3 26 26 H 1.09007 * 109.46835 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47183 * 240.00040 * 2 1 3 28 28 H 1.09001 * 109.46813 * 299.99960 * 3 2 1 29 29 H 1.09001 * 109.46984 * 59.99918 * 3 2 1 30 30 H 1.08992 * 109.47288 * 180.02562 * 3 2 1 31 31 H 1.07999 * 119.94097 * 359.97438 * 6 5 4 32 32 H 1.08001 * 120.06117 * 180.27599 * 7 6 5 33 33 H 1.07997 * 120.00232 * 180.02562 * 9 8 7 34 34 H 1.08008 * 119.99270 * 359.97438 * 10 9 8 35 35 H 0.97004 * 119.99730 * 359.97438 * 13 11 10 36 36 H 0.97001 * 119.99949 * 180.02562 * 17 16 14 37 37 H 1.07996 * 120.06341 * 179.97438 * 22 8 7 38 38 H 1.08006 * 119.93711 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2485 -1.2172 1.1007 6 6 4.0348 -1.0127 -0.0275 7 6 5.2973 -1.5570 -0.0973 8 6 5.7844 -2.3275 0.9654 9 6 7.1286 -2.9168 0.8934 10 6 7.8972 -2.7150 -0.1997 11 6 9.1945 -3.2833 -0.2690 12 8 9.6162 -3.9527 0.6567 13 7 9.9612 -3.0815 -1.3589 14 6 11.2125 -3.6291 -1.4255 15 1 11.5862 -4.2235 -0.6049 16 6 12.0035 -3.4213 -2.5506 17 7 13.2052 -3.9476 -2.6148 18 14 11.3568 -2.3938 -3.9703 19 1 11.7213 -0.9701 -3.7571 20 1 11.9562 -2.8733 -5.2415 21 1 9.8791 -2.5212 -4.0407 22 6 4.9861 -2.5350 2.0967 23 6 3.7276 -1.9807 2.1591 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1299 1.4425 -0.0005 31 1 3.6561 -0.4225 -0.8488 32 1 5.9091 -1.3939 -0.9722 33 1 7.5023 -3.5112 1.7140 34 1 7.5232 -2.1209 -1.0205 35 1 9.6253 -2.5480 -2.0961 36 1 13.7570 -3.8025 -3.3993 37 1 5.3570 -3.1289 2.9190 38 1 3.1109 -2.1405 3.0312 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126738001.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:34 Heat of formation + Delta-G solvation = -35.756826 kcal Electronic energy + Delta-G solvation = -19746.800401 eV Core-core repulsion = 16554.943006 eV Total energy + Delta-G solvation = -3191.857395 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.42225 -38.68013 -37.82625 -34.32788 -33.76723 -32.61525 -31.77822 -31.10952 -28.83812 -27.65801 -25.48387 -23.47443 -23.32871 -21.30440 -20.42162 -19.13335 -18.53473 -17.92360 -16.72326 -15.76603 -15.71557 -15.18125 -14.96285 -14.74117 -14.26562 -13.72903 -13.63040 -13.51457 -13.37378 -13.04568 -12.85718 -12.70493 -12.54679 -12.32756 -12.21569 -11.83040 -11.51011 -11.32298 -11.24394 -11.12903 -10.68669 -10.61033 -10.08343 -9.76693 -9.42362 -9.09376 -8.56868 -8.27256 -7.64255 -6.46223 -3.85438 0.82233 1.31803 2.32575 2.96454 2.98710 3.02552 3.08879 3.81227 3.99916 4.36146 4.38826 4.51410 4.65083 4.69048 4.75320 4.80735 5.13293 5.13809 5.20288 5.25241 5.27455 5.33207 5.34881 5.43274 5.52821 5.66346 5.69573 5.77972 5.97043 6.13124 6.18806 6.29427 6.39129 6.69601 6.86155 6.98030 7.30059 7.48324 8.09148 8.51052 8.86268 9.32565 9.83328 10.65690 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.027254 B = 0.003153 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.116104 B = 8878.129316 C = 9774.629481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.076 3.924 3 C -0.181 4.181 4 O -0.312 6.312 5 C 0.125 3.875 6 C -0.209 4.209 7 C -0.074 4.074 8 C -0.085 4.085 9 C -0.069 4.069 10 C -0.173 4.173 11 C 0.463 3.537 12 O -0.592 6.592 13 N -0.571 5.571 14 C -0.294 4.294 15 H 0.123 0.877 16 C 0.040 3.960 17 N -0.866 5.866 18 Si 0.882 3.118 19 H -0.268 1.268 20 H -0.274 1.274 21 H -0.267 1.267 22 C -0.067 4.067 23 C -0.153 4.153 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.133 0.867 34 H 0.110 0.890 35 H 0.372 0.628 36 H 0.277 0.723 37 H 0.134 0.866 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.350 10.197 2.018 26.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.019 3.981 3 C -0.239 4.239 4 O -0.226 6.226 5 C 0.079 3.921 6 C -0.228 4.228 7 C -0.092 4.092 8 C -0.086 4.086 9 C -0.091 4.091 10 C -0.194 4.194 11 C 0.255 3.745 12 O -0.479 6.479 13 N -0.207 5.207 14 C -0.424 4.424 15 H 0.141 0.859 16 C -0.165 4.165 17 N -0.504 5.504 18 Si 0.708 3.292 19 H -0.193 1.193 20 H -0.199 1.199 21 H -0.192 1.192 22 C -0.085 4.085 23 C -0.171 4.171 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.151 0.849 34 H 0.128 0.872 35 H 0.205 0.795 36 H 0.088 0.912 37 H 0.151 0.849 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -23.946 9.720 2.616 25.975 hybrid contribution -0.200 0.911 -1.573 1.829 sum -24.146 10.631 1.042 26.403 Atomic orbital electron populations 1.21852 0.92519 1.03168 1.03003 1.22433 0.95336 0.92687 0.87596 1.22397 1.02441 0.95953 1.03086 1.86065 1.29358 1.68389 1.38810 1.19124 0.84460 0.93834 0.94650 1.21173 0.96247 1.06553 0.98789 1.21246 0.94622 0.95164 0.98150 1.19078 0.94872 0.99851 0.94780 1.22062 0.90894 0.97643 0.98458 1.22136 0.96006 1.02276 0.99013 1.16569 0.86296 0.87143 0.84514 1.90684 1.74907 1.44323 1.37966 1.42302 1.15646 1.45977 1.16739 1.19579 0.88825 1.28700 1.05266 0.85902 1.25173 0.95563 0.97744 0.98030 1.69599 1.08480 1.42384 1.29970 0.86614 0.79181 0.81014 0.82414 1.19323 1.19887 1.19232 1.21184 0.92520 0.97586 0.97258 1.20324 0.97054 1.01083 0.98662 0.91491 0.90551 0.91635 0.90804 0.91045 0.91435 0.91612 0.85396 0.85309 0.84909 0.87168 0.79490 0.91242 0.84852 0.85268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.56 37.16 0.36 -0.54 16 2 C 0.08 0.60 2.85 -26.73 -0.08 0.52 16 3 C -0.18 -1.27 9.16 37.16 0.34 -0.93 16 4 O -0.31 -3.40 9.79 -18.95 -0.19 -3.58 16 5 C 0.12 1.47 6.61 -39.00 -0.26 1.21 16 6 C -0.21 -2.38 8.20 -39.50 -0.32 -2.71 16 7 C -0.07 -0.94 9.40 -39.13 -0.37 -1.31 16 8 C -0.09 -1.21 5.87 -105.05 -0.62 -1.82 16 9 C -0.07 -1.16 9.42 -37.16 -0.35 -1.51 16 10 C -0.17 -3.20 9.19 -39.32 -0.36 -3.56 16 11 C 0.46 11.12 7.52 -14.90 -0.11 11.01 16 12 O -0.59 -16.61 15.68 5.12 0.08 -16.53 16 13 N -0.57 -13.97 5.07 -13.56 -0.07 -14.04 16 14 C -0.29 -8.35 10.16 -15.04 -0.15 -8.50 16 15 H 0.12 3.97 7.38 -52.49 -0.39 3.58 16 16 C 0.04 1.08 5.50 -17.44 -0.10 0.98 16 17 N -0.87 -24.81 13.95 55.50 0.77 -24.04 16 18 Si 0.88 19.05 27.74 -169.99 -4.72 14.33 16 19 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 20 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 21 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 22 C -0.07 -0.83 9.79 -39.13 -0.38 -1.22 16 23 C -0.15 -1.78 9.97 -39.50 -0.39 -2.18 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.56 6.30 -51.93 -0.33 0.23 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.52 6.89 -51.93 -0.36 0.16 16 31 H 0.13 1.18 5.40 -52.49 -0.28 0.90 16 32 H 0.13 1.49 6.16 -52.49 -0.32 1.17 16 33 H 0.13 2.36 7.45 -52.49 -0.39 1.97 16 34 H 0.11 1.68 6.07 -52.48 -0.32 1.36 16 35 H 0.37 7.92 5.72 -40.82 -0.23 7.68 16 36 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 322.64 15.07 4.86 4.86 Total: -1.00 -32.69 322.64 -6.80 -39.49 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -4.75 Total: 10.05 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -2.80 Total: -10.54 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.71 Total: -38.08 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.11 Total: -20.12 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.72 Total: 14.33 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.69 -6.80 -39.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126738001.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.732 kcal (2) G-P(sol) polarization free energy of solvation -32.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds