Wall clock time and date at job start Mon Mar 30 2020 01:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47270 * 2 1 4 4 O 1.42905 * 109.47122 * 119.99844 * 2 1 3 5 5 C 1.35749 * 116.99819 * 155.38234 * 4 2 1 6 6 C 1.39026 * 119.88233 * 5.08836 * 5 4 2 7 7 C 1.37656 * 120.11455 * 179.72620 * 6 5 4 8 8 C 1.40010 * 119.87883 * 0.56572 * 7 6 5 9 9 C 1.46948 * 120.11420 * 179.68050 * 8 7 6 10 10 C 1.35142 * 120.00228 * 0.02815 * 9 8 7 11 11 C 1.41797 * 120.00101 * 179.97438 * 10 9 8 12 12 O 1.21772 * 120.00039 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99883 * 180.02562 * 11 10 9 14 14 C 1.36749 * 120.00127 * 179.97438 * 13 11 10 15 15 H 1.07997 * 119.99671 * 0.02562 * 14 13 11 16 16 C 1.39094 * 119.99975 * 179.97438 * 14 13 11 17 17 N 1.31344 * 119.99853 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00004 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.46894 * 90.00261 * 18 16 14 20 20 H 1.48499 * 109.46720 * 210.00049 * 18 16 14 21 21 H 1.48493 * 109.47391 * 330.00091 * 18 16 14 22 22 C 1.40003 * 119.77040 * 359.70714 * 8 7 6 23 23 C 1.37658 * 119.87890 * 359.97438 * 22 8 7 24 24 H 1.09001 * 109.47183 * 299.99960 * 1 2 3 25 25 H 1.09001 * 109.47170 * 60.00259 * 1 2 3 26 26 H 1.09007 * 109.46835 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47183 * 240.00040 * 2 1 3 28 28 H 1.09001 * 109.46813 * 299.99960 * 3 2 1 29 29 H 1.09001 * 109.46984 * 59.99918 * 3 2 1 30 30 H 1.08992 * 109.47288 * 180.02562 * 3 2 1 31 31 H 1.07999 * 119.94097 * 359.97438 * 6 5 4 32 32 H 1.08001 * 120.06117 * 180.27599 * 7 6 5 33 33 H 1.07997 * 120.00232 * 180.02562 * 9 8 7 34 34 H 1.08008 * 119.99270 * 359.97438 * 10 9 8 35 35 H 0.97004 * 119.99730 * 359.97438 * 13 11 10 36 36 H 0.97001 * 119.99949 * 180.02562 * 17 16 14 37 37 H 1.07996 * 120.06341 * 179.97438 * 22 8 7 38 38 H 1.08006 * 119.93711 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2485 -1.2172 1.1007 6 6 4.0348 -1.0127 -0.0275 7 6 5.2973 -1.5570 -0.0973 8 6 5.7844 -2.3275 0.9654 9 6 7.1286 -2.9168 0.8934 10 6 7.8972 -2.7150 -0.1997 11 6 9.1945 -3.2833 -0.2690 12 8 9.6162 -3.9527 0.6567 13 7 9.9612 -3.0815 -1.3589 14 6 11.2125 -3.6291 -1.4255 15 1 11.5862 -4.2235 -0.6049 16 6 12.0035 -3.4213 -2.5506 17 7 13.2052 -3.9476 -2.6148 18 14 11.3568 -2.3938 -3.9703 19 1 11.7213 -0.9701 -3.7571 20 1 11.9562 -2.8733 -5.2415 21 1 9.8791 -2.5212 -4.0407 22 6 4.9861 -2.5350 2.0967 23 6 3.7276 -1.9807 2.1591 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1299 1.4425 -0.0005 31 1 3.6561 -0.4225 -0.8488 32 1 5.9091 -1.3939 -0.9722 33 1 7.5023 -3.5112 1.7140 34 1 7.5232 -2.1209 -1.0205 35 1 9.6253 -2.5480 -2.0961 36 1 13.7570 -3.8025 -3.3993 37 1 5.3570 -3.1289 2.9190 38 1 3.1109 -2.1405 3.0312 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126738001.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:33 Heat of formation + Delta-G solvation = -57.268655 kcal Electronic energy + Delta-G solvation = -19747.733224 eV Core-core repulsion = 16554.943006 eV Total energy + Delta-G solvation = -3192.790218 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.29606 -40.47717 -38.86071 -36.20187 -34.83871 -33.87103 -33.61559 -32.03550 -30.06161 -28.17369 -27.25356 -24.67369 -24.30361 -22.43293 -21.49754 -21.02949 -19.61235 -19.34564 -18.20580 -17.05942 -16.58526 -16.43301 -16.29642 -15.71229 -15.55657 -15.46586 -15.01818 -14.76332 -14.45641 -14.25466 -14.04977 -13.72099 -13.46570 -13.20194 -13.04199 -12.97637 -12.81282 -12.61543 -12.46369 -12.06226 -11.99593 -11.86795 -11.58856 -11.47898 -10.71358 -10.58946 -10.31150 -10.01977 -8.76605 -8.48751 -6.03407 -0.36460 0.39841 1.04916 1.28956 1.38958 1.43345 2.19225 2.22159 2.43017 2.90217 3.03392 3.24651 3.73123 3.83843 3.89595 3.92155 4.00126 4.17677 4.25711 4.31494 4.37138 4.51688 4.64678 4.71127 4.83039 4.88692 4.92213 5.04510 5.12059 5.22193 5.22732 5.27821 5.35728 5.41119 5.62870 5.73063 5.76756 5.93110 6.46595 6.53405 6.81752 7.32796 7.92265 8.68343 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.027254 B = 0.003153 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.116104 B = 8878.129316 C = 9774.629481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.065 3.935 3 C -0.179 4.179 4 O -0.322 6.322 5 C 0.133 3.867 6 C -0.212 4.212 7 C -0.066 4.066 8 C -0.120 4.120 9 C -0.023 4.023 10 C -0.207 4.207 11 C 0.470 3.530 12 O -0.644 6.644 13 N -0.574 5.574 14 C -0.331 4.331 15 H 0.057 0.943 16 C -0.013 4.013 17 N -0.923 5.923 18 Si 0.966 3.034 19 H -0.254 1.254 20 H -0.270 1.270 21 H -0.232 1.232 22 C -0.060 4.060 23 C -0.164 4.164 24 H 0.064 0.936 25 H 0.098 0.902 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.153 0.847 32 H 0.144 0.856 33 H 0.116 0.884 34 H 0.152 0.848 35 H 0.391 0.609 36 H 0.283 0.717 37 H 0.146 0.854 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.524 12.838 0.421 31.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.010 3.990 3 C -0.237 4.237 4 O -0.236 6.236 5 C 0.088 3.912 6 C -0.230 4.230 7 C -0.084 4.084 8 C -0.120 4.120 9 C -0.044 4.044 10 C -0.228 4.228 11 C 0.263 3.737 12 O -0.534 6.534 13 N -0.212 5.212 14 C -0.460 4.460 15 H 0.075 0.925 16 C -0.213 4.213 17 N -0.562 5.562 18 Si 0.785 3.215 19 H -0.178 1.178 20 H -0.194 1.194 21 H -0.155 1.155 22 C -0.078 4.078 23 C -0.182 4.182 24 H 0.084 0.916 25 H 0.116 0.884 26 H 0.080 0.920 27 H 0.100 0.900 28 H 0.111 0.889 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.170 0.830 32 H 0.162 0.838 33 H 0.134 0.866 34 H 0.169 0.831 35 H 0.227 0.773 36 H 0.093 0.907 37 H 0.164 0.836 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -28.163 12.375 1.029 30.779 hybrid contribution 0.730 0.112 -0.775 1.070 sum -27.433 12.487 0.255 30.142 Atomic orbital electron populations 1.21885 0.91125 1.03300 1.04035 1.22766 0.96480 0.92983 0.86772 1.22393 1.01813 0.95441 1.04021 1.86083 1.28726 1.68250 1.40535 1.19370 0.84788 0.92584 0.94504 1.21404 0.95647 1.06529 0.99429 1.21457 0.95142 0.93881 0.97891 1.18973 0.93895 1.02421 0.96729 1.22226 0.91596 0.94058 0.96557 1.21921 0.93654 1.05451 1.01741 1.17524 0.87727 0.85249 0.83174 1.90649 1.76525 1.46371 1.39819 1.42004 1.14448 1.46942 1.17791 1.19082 0.91399 1.30717 1.04800 0.92465 1.26227 0.95286 0.98704 1.01096 1.69765 1.10396 1.44573 1.31499 0.85350 0.80436 0.78813 0.76915 1.17811 1.19442 1.15518 1.21378 0.92545 0.96895 0.96973 1.20547 0.96973 1.01158 0.99526 0.91645 0.88379 0.91968 0.90044 0.88929 0.91791 0.92506 0.82993 0.83838 0.86583 0.83100 0.77260 0.90743 0.83625 0.83629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.56 71.98 0.69 -0.59 16 2 C 0.07 0.80 2.85 30.59 0.09 0.89 16 3 C -0.18 -1.88 9.16 71.98 0.66 -1.22 16 4 O -0.32 -5.97 9.79 -90.74 -0.89 -6.86 16 5 C 0.13 2.71 6.61 22.65 0.15 2.86 16 6 C -0.21 -4.00 8.20 22.32 0.18 -3.82 16 7 C -0.07 -1.44 9.40 22.56 0.21 -1.23 16 8 C -0.12 -3.08 5.87 -20.14 -0.12 -3.20 16 9 C -0.02 -0.74 9.42 23.84 0.22 -0.52 16 10 C -0.21 -7.40 9.19 22.44 0.21 -7.20 16 11 C 0.47 23.14 7.52 85.12 0.64 23.78 16 12 O -0.64 -38.19 15.68 -4.58 -0.07 -38.26 16 13 N -0.57 -28.59 5.07 -315.01 -1.60 -30.18 16 14 C -0.33 -19.89 10.16 84.13 0.85 -19.03 16 15 H 0.06 4.08 7.38 -2.91 -0.02 4.06 16 16 C -0.01 -0.73 5.50 84.97 0.47 -0.27 16 17 N -0.92 -55.59 13.95 21.69 0.30 -55.29 16 18 Si 0.97 38.76 27.74 68.60 1.90 40.67 16 19 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 20 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 21 H -0.23 -7.90 6.52 99.48 0.65 -7.26 16 22 C -0.06 -1.34 9.79 22.56 0.22 -1.12 16 23 C -0.16 -3.34 9.97 22.32 0.22 -3.12 16 24 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 27 H 0.08 0.89 6.30 -2.39 -0.02 0.88 16 28 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.70 6.89 -2.39 -0.02 0.69 16 31 H 0.15 2.11 5.40 -2.91 -0.02 2.09 16 32 H 0.14 2.68 6.16 -2.91 -0.02 2.66 16 33 H 0.12 4.15 7.45 -2.91 -0.02 4.12 16 34 H 0.15 4.09 6.07 -2.91 -0.02 4.07 16 35 H 0.39 16.05 5.72 -92.71 -0.53 15.52 16 36 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 37 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 38 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -77.79 322.64 4.84 -72.95 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: 0.49 Total: 30.75 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: 4.70 Total: -13.78 kcal Atomic # 7 Polarization: -84.18 SS G_CDS: -1.29 Total: -85.47 kcal Atomic # 8 Polarization: -44.16 SS G_CDS: -0.96 Total: -45.12 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 1.90 Total: 40.67 kcal Total: -77.79 4.84 -72.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126738001.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.681 kcal (2) G-P(sol) polarization free energy of solvation -77.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds