Wall clock time and date at job start Mon Mar 30 2020 02:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.33065 * 2 1 4 4 C 1.54479 * 110.46674 * 122.30751 * 2 1 3 5 5 C 1.54509 * 104.06336 * 142.86116 * 4 2 1 6 6 H 1.09002 * 110.50793 * 241.35310 * 5 4 2 7 7 C 1.50701 * 110.62666 * 118.70447 * 5 4 2 8 8 O 1.21272 * 120.00260 * 3.83518 * 7 5 4 9 9 N 1.34775 * 119.99797 * 183.83492 * 7 5 4 10 10 C 1.39238 * 120.00347 * 176.69461 * 9 7 5 11 11 C 1.39477 * 119.83680 * 217.49408 * 10 9 7 12 12 C 1.36374 * 120.16929 * 179.76100 * 11 10 9 13 13 C 1.40865 * 119.82722 * 0.50508 * 12 11 10 14 14 C 1.41155 * 120.16499 * 179.71940 * 13 12 11 15 15 H 1.08003 * 119.99852 * 157.99191 * 14 13 12 16 16 C 1.39904 * 119.99896 * 337.99355 * 14 13 12 17 17 N 1.30869 * 120.00204 * 327.59181 * 16 14 13 18 18 Si 1.86797 * 120.00006 * 147.59508 * 16 14 13 19 19 H 1.48508 * 109.47320 * 94.98298 * 18 16 14 20 20 H 1.48502 * 109.47207 * 214.98331 * 18 16 14 21 21 H 1.48504 * 109.47294 * 334.98464 * 18 16 14 22 22 C 1.40878 * 119.67402 * 359.74724 * 13 12 11 23 23 C 1.36372 * 119.82296 * 359.97438 * 22 13 12 24 24 C 1.54480 * 104.06081 * 0.02562 * 5 4 2 25 25 O 1.44417 * 104.80434 * 336.01969 * 24 5 4 26 26 H 1.09002 * 109.47001 * 179.30332 * 1 2 3 27 27 H 1.08996 * 109.47079 * 299.30104 * 1 2 3 28 28 H 1.08998 * 109.47156 * 59.30463 * 1 2 3 29 29 H 1.09004 * 110.51594 * 261.50861 * 4 2 1 30 30 H 1.09003 * 110.51052 * 24.21327 * 4 2 1 31 31 H 0.97007 * 119.99979 * 356.70005 * 9 7 5 32 32 H 1.07995 * 119.91501 * 0.02562 * 11 10 9 33 33 H 1.08004 * 120.08801 * 180.25093 * 12 11 10 34 34 H 0.96995 * 120.00523 * 180.02562 * 17 16 14 35 35 H 1.08001 * 120.08647 * 179.97438 * 22 13 12 36 36 H 1.08003 * 119.91287 * 179.97438 * 23 22 13 37 37 H 1.09002 * 110.36936 * 217.18822 * 24 5 4 38 38 H 1.08995 * 110.46489 * 94.90461 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0702 -0.7735 1.2232 5 6 3.3208 -1.5030 0.6838 6 1 3.2003 -2.5829 0.7709 7 6 4.5571 -1.0502 1.4170 8 8 4.4625 -0.2718 2.3422 9 7 5.7679 -1.5102 1.0445 10 6 6.9160 -1.0396 1.6763 11 6 8.0793 -0.8304 0.9358 12 6 9.2063 -0.3651 1.5467 13 6 9.1965 -0.1058 2.9313 14 6 10.3606 0.3703 3.5720 15 1 10.2828 0.8970 4.5117 16 6 11.6152 0.1600 2.9897 17 7 11.8369 -0.9202 2.2851 18 14 12.9741 1.4212 3.2181 19 1 13.8321 1.0227 4.3629 20 1 13.7969 1.4915 1.9838 21 1 12.3738 2.7522 3.4893 22 6 8.0192 -0.3247 3.6735 23 6 6.8985 -0.7848 3.0475 24 6 3.3887 -1.0834 -0.8014 25 8 2.0334 -0.7217 -1.1449 26 1 -0.3633 -1.0276 -0.0125 27 1 -0.3633 0.5029 0.8962 28 1 -0.3633 0.5246 -0.8837 29 1 2.3450 -0.0832 2.0208 30 1 1.3314 -1.4927 1.5770 31 1 5.8395 -2.1691 0.3362 32 1 8.0864 -1.0333 -0.1249 33 1 10.1051 -0.1996 0.9713 34 1 12.7068 -1.0662 1.8816 35 1 8.0044 -0.1285 4.7354 36 1 5.9953 -0.9535 3.6152 37 1 3.7262 -1.9177 -1.4163 38 1 4.0528 -0.2282 -0.9258 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132472378.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:17 Heat of formation + Delta-G solvation = -69.823430 kcal Electronic energy + Delta-G solvation = -20586.105786 eV Core-core repulsion = 17392.771151 eV Total energy + Delta-G solvation = -3193.334634 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.39980 -38.77938 -37.16551 -34.52904 -33.15563 -32.36833 -31.77203 -29.59858 -28.96479 -26.22032 -25.11005 -23.20202 -21.68682 -21.22489 -20.53256 -19.47166 -17.60190 -17.26591 -16.51560 -15.93543 -15.67232 -15.27905 -15.16307 -14.57060 -14.07259 -13.77622 -13.39318 -12.99421 -12.78051 -12.58269 -12.27298 -12.18115 -12.11221 -11.92858 -11.58971 -11.35030 -11.19744 -11.00660 -10.94305 -10.85417 -10.55479 -10.18176 -9.91701 -9.77462 -9.45583 -9.08787 -8.73076 -7.58509 -7.18871 -6.92063 -4.30661 2.52883 2.92211 3.03142 3.06493 3.09836 3.29564 3.55297 3.86556 3.88001 4.35905 4.46816 4.61323 4.85408 4.92839 5.08243 5.15656 5.30715 5.46030 5.55385 5.60055 5.64914 5.77874 5.86915 5.97950 6.01276 6.15624 6.38818 6.68008 6.73618 6.91687 6.96939 7.10905 7.25208 7.53069 7.65370 7.85103 7.98648 8.21748 8.24637 8.51472 8.71469 8.80680 8.96225 9.98721 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.044751 B = 0.003367 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.537180 B = 8313.564620 C = 8481.303086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.068 3.932 3 H 0.070 0.930 4 C -0.140 4.140 5 C -0.144 4.144 6 H 0.106 0.894 7 C 0.505 3.495 8 O -0.530 6.530 9 N -0.646 5.646 10 C -0.026 4.026 11 C -0.101 4.101 12 C -0.172 4.172 13 C 0.113 3.887 14 C -0.465 4.465 15 H 0.082 0.918 16 C 0.088 3.912 17 N -0.768 5.768 18 Si 0.896 3.104 19 H -0.269 1.269 20 H -0.274 1.274 21 H -0.257 1.257 22 C -0.224 4.224 23 C -0.065 4.065 24 C 0.058 3.942 25 O -0.372 6.372 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.102 0.898 30 H 0.078 0.922 31 H 0.394 0.606 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.284 0.716 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.945 -1.776 -5.932 14.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.011 3.989 3 H 0.088 0.912 4 C -0.178 4.178 5 C -0.166 4.166 6 H 0.124 0.876 7 C 0.291 3.709 8 O -0.407 6.407 9 N -0.288 5.288 10 C -0.118 4.118 11 C -0.121 4.121 12 C -0.191 4.191 13 C 0.110 3.890 14 C -0.492 4.492 15 H 0.100 0.900 16 C -0.134 4.134 17 N -0.391 5.391 18 Si 0.720 3.280 19 H -0.194 1.194 20 H -0.199 1.199 21 H -0.181 1.181 22 C -0.245 4.245 23 C -0.085 4.085 24 C -0.020 4.020 25 O -0.291 6.291 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.121 0.879 30 H 0.097 0.903 31 H 0.227 0.773 32 H 0.107 0.893 33 H 0.125 0.875 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.966 -1.412 -5.604 14.196 hybrid contribution 0.984 0.058 -0.172 1.001 sum -11.982 -1.353 -5.776 13.370 Atomic orbital electron populations 1.21790 0.93138 1.02812 1.02446 1.23045 0.95253 0.95819 0.84807 0.91155 1.22999 0.95206 1.00283 0.99328 1.22673 0.94630 1.02732 0.96546 0.87589 1.20206 0.84434 0.81503 0.84786 1.90660 1.85835 1.35041 1.29152 1.42932 1.05096 1.42416 1.38366 1.17056 0.86269 1.16435 0.92001 1.20164 0.93264 1.01763 0.96888 1.20620 0.96707 1.06993 0.94809 1.17599 0.92129 0.87730 0.91495 1.19521 0.90260 1.32186 1.07265 0.89977 1.25947 1.00173 0.94383 0.92881 1.69939 1.24250 1.21216 1.23713 0.86503 0.80091 0.82630 0.78824 1.19429 1.19865 1.18065 1.20599 0.94490 1.11285 0.98076 1.20291 0.97178 0.98751 0.92246 1.23332 0.85149 1.00632 0.92846 1.89103 1.26669 1.74736 1.38594 0.91823 0.91022 0.91945 0.87949 0.90304 0.77260 0.89264 0.87465 0.90555 0.88738 0.88035 0.88390 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.53 37.16 0.35 -0.92 16 2 C 0.07 0.77 3.91 -25.96 -0.10 0.67 16 3 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.14 -1.66 6.22 -25.16 -0.16 -1.82 16 5 C -0.14 -1.77 3.51 -90.20 -0.32 -2.09 16 6 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 7 C 0.50 8.52 6.85 -10.99 -0.08 8.45 16 8 O -0.53 -11.07 12.92 5.56 0.07 -11.00 16 9 N -0.65 -11.13 5.23 -9.74 -0.05 -11.18 16 10 C -0.03 -0.57 6.25 -83.57 -0.52 -1.09 16 11 C -0.10 -2.28 9.90 -39.79 -0.39 -2.67 16 12 C -0.17 -4.35 8.74 -39.26 -0.34 -4.69 16 13 C 0.11 3.01 5.57 -106.80 -0.60 2.42 16 14 C -0.46 -12.21 8.94 -37.85 -0.34 -12.55 16 15 H 0.08 2.09 8.02 -52.48 -0.42 1.67 16 16 C 0.09 2.16 4.77 -17.34 -0.08 2.07 16 17 N -0.77 -19.22 11.78 55.55 0.65 -18.57 16 18 Si 0.90 18.06 29.66 -169.99 -5.04 13.02 16 19 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 20 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 21 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 22 C -0.22 -5.71 9.74 -39.26 -0.38 -6.09 16 23 C -0.06 -1.56 8.59 -39.79 -0.34 -1.90 16 24 C 0.06 0.66 7.12 37.93 0.27 0.93 16 25 O -0.37 -4.67 11.34 -35.23 -0.40 -5.07 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.10 1.42 6.52 -51.93 -0.34 1.08 16 30 H 0.08 0.80 7.88 -51.93 -0.41 0.39 16 31 H 0.39 5.34 8.82 -40.82 -0.36 4.97 16 32 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.11 2.75 6.52 -52.48 -0.34 2.41 16 34 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 35 H 0.09 2.29 8.06 -52.49 -0.42 1.87 16 36 H 0.10 2.40 6.45 -52.48 -0.34 2.06 16 37 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.83 7.86 -51.93 -0.41 0.42 16 LS Contribution 317.24 15.07 4.78 4.78 Total: -1.00 -29.77 317.24 -8.15 -37.92 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -5.13 Total: 9.38 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -3.03 Total: -19.28 kcal Atomic # 7 Polarization: -30.35 SS G_CDS: 0.60 Total: -29.75 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.33 Total: -16.07 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.04 Total: 13.02 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.77 -8.15 -37.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132472378.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.906 kcal (2) G-P(sol) polarization free energy of solvation -29.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds