Wall clock time and date at job start Mon Mar 30 2020 02:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.33065 * 2 1 4 4 C 1.54479 * 110.46674 * 122.30751 * 2 1 3 5 5 C 1.54509 * 104.06336 * 142.86116 * 4 2 1 6 6 H 1.09002 * 110.50793 * 241.35310 * 5 4 2 7 7 C 1.50701 * 110.62666 * 118.70447 * 5 4 2 8 8 O 1.21272 * 120.00260 * 3.83518 * 7 5 4 9 9 N 1.34775 * 119.99797 * 183.83492 * 7 5 4 10 10 C 1.39238 * 120.00347 * 176.69461 * 9 7 5 11 11 C 1.39477 * 119.83680 * 217.49408 * 10 9 7 12 12 C 1.36374 * 120.16929 * 179.76100 * 11 10 9 13 13 C 1.40865 * 119.82722 * 0.50508 * 12 11 10 14 14 C 1.41155 * 120.16499 * 179.71940 * 13 12 11 15 15 H 1.08003 * 119.99852 * 157.99191 * 14 13 12 16 16 C 1.39904 * 119.99896 * 337.99355 * 14 13 12 17 17 N 1.30869 * 120.00204 * 327.59181 * 16 14 13 18 18 Si 1.86797 * 120.00006 * 147.59508 * 16 14 13 19 19 H 1.48508 * 109.47320 * 94.98298 * 18 16 14 20 20 H 1.48502 * 109.47207 * 214.98331 * 18 16 14 21 21 H 1.48504 * 109.47294 * 334.98464 * 18 16 14 22 22 C 1.40878 * 119.67402 * 359.74724 * 13 12 11 23 23 C 1.36372 * 119.82296 * 359.97438 * 22 13 12 24 24 C 1.54480 * 104.06081 * 0.02562 * 5 4 2 25 25 O 1.44417 * 104.80434 * 336.01969 * 24 5 4 26 26 H 1.09002 * 109.47001 * 179.30332 * 1 2 3 27 27 H 1.08996 * 109.47079 * 299.30104 * 1 2 3 28 28 H 1.08998 * 109.47156 * 59.30463 * 1 2 3 29 29 H 1.09004 * 110.51594 * 261.50861 * 4 2 1 30 30 H 1.09003 * 110.51052 * 24.21327 * 4 2 1 31 31 H 0.97007 * 119.99979 * 356.70005 * 9 7 5 32 32 H 1.07995 * 119.91501 * 0.02562 * 11 10 9 33 33 H 1.08004 * 120.08801 * 180.25093 * 12 11 10 34 34 H 0.96995 * 120.00523 * 180.02562 * 17 16 14 35 35 H 1.08001 * 120.08647 * 179.97438 * 22 13 12 36 36 H 1.08003 * 119.91287 * 179.97438 * 23 22 13 37 37 H 1.09002 * 110.36936 * 217.18822 * 24 5 4 38 38 H 1.08995 * 110.46489 * 94.90461 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0702 -0.7735 1.2232 5 6 3.3208 -1.5030 0.6838 6 1 3.2003 -2.5829 0.7709 7 6 4.5571 -1.0502 1.4170 8 8 4.4625 -0.2718 2.3422 9 7 5.7679 -1.5102 1.0445 10 6 6.9160 -1.0396 1.6763 11 6 8.0793 -0.8304 0.9358 12 6 9.2063 -0.3651 1.5467 13 6 9.1965 -0.1058 2.9313 14 6 10.3606 0.3703 3.5720 15 1 10.2828 0.8970 4.5117 16 6 11.6152 0.1600 2.9897 17 7 11.8369 -0.9202 2.2851 18 14 12.9741 1.4212 3.2181 19 1 13.8321 1.0227 4.3629 20 1 13.7969 1.4915 1.9838 21 1 12.3738 2.7522 3.4893 22 6 8.0192 -0.3247 3.6735 23 6 6.8985 -0.7848 3.0475 24 6 3.3887 -1.0834 -0.8014 25 8 2.0334 -0.7217 -1.1449 26 1 -0.3633 -1.0276 -0.0125 27 1 -0.3633 0.5029 0.8962 28 1 -0.3633 0.5246 -0.8837 29 1 2.3450 -0.0832 2.0208 30 1 1.3314 -1.4927 1.5770 31 1 5.8395 -2.1691 0.3362 32 1 8.0864 -1.0333 -0.1249 33 1 10.1051 -0.1996 0.9713 34 1 12.7068 -1.0662 1.8816 35 1 8.0044 -0.1285 4.7354 36 1 5.9953 -0.9535 3.6152 37 1 3.7262 -1.9177 -1.4163 38 1 4.0528 -0.2282 -0.9258 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132472378.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:16 Heat of formation + Delta-G solvation = -88.100926 kcal Electronic energy + Delta-G solvation = -20586.898357 eV Core-core repulsion = 17392.771151 eV Total energy + Delta-G solvation = -3194.127206 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.65852 -40.08150 -38.85268 -36.23420 -34.86630 -33.35238 -32.75533 -31.47954 -30.74990 -27.31331 -26.61609 -24.52772 -23.24602 -22.58973 -22.04518 -20.83670 -19.34845 -18.68875 -18.06003 -17.05748 -16.95676 -16.58971 -16.38131 -15.91347 -15.76609 -15.27333 -14.81350 -14.48852 -14.10007 -14.00339 -13.83222 -13.50357 -13.32872 -13.08776 -12.95237 -12.83714 -12.69803 -12.43051 -12.28984 -11.94371 -11.81018 -11.77756 -11.60313 -11.14628 -10.83279 -10.74666 -10.47529 -9.49991 -9.03505 -8.74713 -6.25298 0.79975 1.11734 1.36210 1.41496 1.53737 1.74636 2.18857 2.27438 2.62423 2.90834 3.38746 3.67176 3.73693 3.83682 4.00526 4.19034 4.23106 4.37538 4.44146 4.48530 4.66579 4.70036 4.83971 4.88950 4.94653 5.02016 5.08170 5.09348 5.15227 5.26524 5.27773 5.42833 5.62282 5.79396 5.85542 6.00667 6.07260 6.33699 6.59385 6.71125 6.87341 6.97012 7.37971 8.18772 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.044751 B = 0.003367 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.537180 B = 8313.564620 C = 8481.303086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.064 3.936 3 H 0.058 0.942 4 C -0.140 4.140 5 C -0.133 4.133 6 H 0.139 0.861 7 C 0.505 3.495 8 O -0.573 6.573 9 N -0.639 5.639 10 C -0.011 4.011 11 C -0.099 4.099 12 C -0.190 4.190 13 C 0.084 3.916 14 C -0.505 4.505 15 H 0.074 0.926 16 C 0.053 3.947 17 N -0.797 5.797 18 Si 0.971 3.029 19 H -0.259 1.259 20 H -0.260 1.260 21 H -0.262 1.262 22 C -0.246 4.246 23 C -0.076 4.076 24 C 0.059 3.941 25 O -0.380 6.380 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.416 0.584 32 H 0.125 0.875 33 H 0.099 0.901 34 H 0.295 0.705 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.130 0.870 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.796 -2.547 -7.628 15.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.007 3.993 3 H 0.076 0.924 4 C -0.178 4.178 5 C -0.154 4.154 6 H 0.156 0.844 7 C 0.294 3.706 8 O -0.452 6.452 9 N -0.283 5.283 10 C -0.104 4.104 11 C -0.118 4.118 12 C -0.210 4.210 13 C 0.081 3.919 14 C -0.533 4.533 15 H 0.092 0.908 16 C -0.167 4.167 17 N -0.420 5.420 18 Si 0.791 3.209 19 H -0.184 1.184 20 H -0.184 1.184 21 H -0.186 1.186 22 C -0.266 4.266 23 C -0.096 4.096 24 C -0.019 4.019 25 O -0.299 6.299 26 H 0.090 0.910 27 H 0.102 0.898 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.119 0.881 31 H 0.253 0.747 32 H 0.142 0.858 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.119 0.881 37 H 0.148 0.852 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.841 -2.217 -7.330 15.818 hybrid contribution 1.104 0.250 0.334 1.180 sum -12.737 -1.967 -6.996 14.664 Atomic orbital electron populations 1.21789 0.91141 1.03575 1.03261 1.23129 0.96875 0.95033 0.84254 0.92385 1.23011 0.95609 1.00360 0.98859 1.22704 0.91851 1.04454 0.96420 0.84372 1.21037 0.85293 0.80278 0.84038 1.90656 1.86533 1.36829 1.31195 1.42857 1.03898 1.42954 1.38628 1.17125 0.87716 1.14182 0.91397 1.20450 0.92401 1.00415 0.98584 1.20656 0.97519 1.08397 0.94422 1.17909 0.92721 0.88744 0.92483 1.19715 0.91581 1.33933 1.08031 0.90760 1.26717 1.01928 0.95841 0.92236 1.69930 1.25562 1.22355 1.24174 0.85374 0.76865 0.79196 0.79429 1.18385 1.18422 1.18611 1.20725 0.95176 1.12521 0.98207 1.20409 0.96617 0.99120 0.93483 1.23426 0.84693 1.01236 0.92500 1.89108 1.27013 1.74770 1.39060 0.91031 0.89842 0.91587 0.90387 0.88102 0.74653 0.85755 0.88328 0.89418 0.89095 0.88072 0.85220 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.53 71.98 0.69 -1.45 16 2 C 0.06 1.34 3.91 31.10 0.12 1.46 16 3 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 4 C -0.14 -3.06 6.22 31.61 0.20 -2.86 16 5 C -0.13 -2.89 3.51 -10.52 -0.04 -2.92 16 6 H 0.14 2.20 8.14 -2.39 -0.02 2.19 16 7 C 0.51 16.27 6.85 87.66 0.60 16.87 16 8 O -0.57 -23.90 12.92 -3.00 -0.04 -23.94 16 9 N -0.64 -20.69 5.23 -303.13 -1.59 -22.28 16 10 C -0.01 -0.48 6.25 38.56 0.24 -0.24 16 11 C -0.10 -4.37 9.90 22.13 0.22 -4.15 16 12 C -0.19 -9.80 8.74 22.48 0.20 -9.60 16 13 C 0.08 4.64 5.57 -21.27 -0.12 4.52 16 14 C -0.51 -27.60 8.94 23.39 0.21 -27.39 16 15 H 0.07 4.00 8.02 -2.91 -0.02 3.97 16 16 C 0.05 2.61 4.77 85.24 0.41 3.01 16 17 N -0.80 -40.27 11.78 21.82 0.26 -40.01 16 18 Si 0.97 37.26 29.66 68.60 2.03 39.30 16 19 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 20 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 21 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 22 C -0.25 -13.06 9.74 22.48 0.22 -12.84 16 23 C -0.08 -3.73 8.59 22.13 0.19 -3.54 16 24 C 0.06 1.16 7.12 72.49 0.52 1.68 16 25 O -0.38 -8.52 11.34 -148.98 -1.69 -10.21 16 26 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.08 2.13 6.52 -2.39 -0.02 2.12 16 30 H 0.10 1.74 7.88 -2.39 -0.02 1.72 16 31 H 0.42 9.87 8.82 -92.70 -0.82 9.05 16 32 H 0.12 4.56 8.06 -2.91 -0.02 4.53 16 33 H 0.10 5.16 6.52 -2.91 -0.02 5.14 16 34 H 0.29 13.18 8.30 -92.71 -0.77 12.41 16 35 H 0.09 4.69 8.06 -2.91 -0.02 4.66 16 36 H 0.10 4.89 6.45 -2.91 -0.02 4.87 16 37 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.05 1.18 7.86 -2.39 -0.02 1.17 16 Total: -1.00 -66.52 317.24 2.88 -63.64 By element: Atomic # 1 Polarization: 30.71 SS G_CDS: 0.26 Total: 30.96 kcal Atomic # 6 Polarization: -41.11 SS G_CDS: 3.65 Total: -37.46 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: -1.33 Total: -62.29 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -1.73 Total: -34.15 kcal Atomic # 14 Polarization: 37.26 SS G_CDS: 2.03 Total: 39.30 kcal Total: -66.52 2.88 -63.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132472378.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.465 kcal (2) G-P(sol) polarization free energy of solvation -66.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds