Wall clock time and date at job start Mon Mar 30 2020 02:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.86846 * 2 1 4 4 C 1.54102 * 109.87744 * 238.99271 * 2 1 3 5 5 C 1.54804 * 104.18902 * 238.39731 * 4 2 1 6 6 H 1.09003 * 110.90817 * 97.31790 * 5 4 2 7 7 C 1.50698 * 110.90773 * 220.88631 * 5 4 2 8 8 O 1.21285 * 119.99779 * 357.07330 * 7 5 4 9 9 N 1.34779 * 120.00196 * 177.07469 * 7 5 4 10 10 C 1.39235 * 120.00232 * 175.12330 * 9 7 5 11 11 C 1.39481 * 119.83333 * 326.27204 * 10 9 7 12 12 C 1.36368 * 120.16808 * 179.72108 * 11 10 9 13 13 C 1.40873 * 119.82946 * 0.54497 * 12 11 10 14 14 C 1.41156 * 120.16534 * 179.74931 * 13 12 11 15 15 H 1.07997 * 119.99627 * 331.20861 * 14 13 12 16 16 C 1.39904 * 120.00186 * 151.21176 * 14 13 12 17 17 N 1.30867 * 120.00365 * 166.76538 * 16 14 13 18 18 Si 1.86808 * 119.99789 * 346.76314 * 16 14 13 19 19 H 1.48498 * 109.46932 * 95.30571 * 18 16 14 20 20 H 1.48499 * 109.46895 * 215.30060 * 18 16 14 21 21 H 1.48495 * 109.47049 * 335.30294 * 18 16 14 22 22 C 1.40867 * 119.67063 * 359.72115 * 13 12 11 23 23 C 1.36370 * 119.82969 * 0.02562 * 22 13 12 24 24 C 1.54992 * 102.09205 * 339.11970 * 5 4 2 25 25 O 1.43739 * 110.00284 * 121.09094 * 2 1 3 26 26 H 1.09005 * 109.46854 * 181.00853 * 1 2 3 27 27 H 1.09003 * 109.46819 * 301.00747 * 1 2 3 28 28 H 1.08996 * 109.47385 * 61.00729 * 1 2 3 29 29 H 1.08999 * 110.48551 * 119.71569 * 4 2 1 30 30 H 1.09005 * 110.59746 * 357.12724 * 4 2 1 31 31 H 0.97008 * 119.99704 * 355.11532 * 9 7 5 32 32 H 1.08002 * 119.91538 * 359.97438 * 11 10 9 33 33 H 1.07997 * 120.09085 * 180.26753 * 12 11 10 34 34 H 0.97000 * 120.00279 * 180.02562 * 17 16 14 35 35 H 1.08001 * 120.08375 * 180.02562 * 22 13 12 36 36 H 1.07998 * 119.91608 * 180.02562 * 23 22 13 37 37 H 1.09004 * 110.61951 * 155.52745 * 24 5 4 38 38 H 1.08996 * 110.61828 * 278.52119 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0540 -0.7466 -1.2421 5 6 2.9226 -1.8882 -0.6603 6 1 2.3591 -2.8200 -0.6123 7 6 4.1847 -2.0669 -1.4642 8 8 4.3729 -1.3934 -2.4551 9 7 5.1043 -2.9751 -1.0820 10 6 6.2213 -3.2124 -1.8786 11 6 6.1148 -3.1261 -3.2666 12 6 7.2058 -3.3516 -4.0530 13 6 8.4400 -3.6838 -3.4607 14 6 9.5726 -3.9239 -4.2682 15 1 9.4499 -4.3102 -5.2692 16 6 10.8540 -3.6616 -3.7718 17 7 11.9061 -4.1174 -4.4026 18 14 11.0632 -2.6608 -2.2083 19 1 11.1937 -3.5776 -1.0475 20 1 12.2842 -1.8227 -2.3168 21 1 9.8780 -1.7866 -2.0180 22 6 8.5384 -3.7746 -2.0584 23 6 7.4399 -3.5413 -1.2847 24 6 3.2418 -1.3609 0.7618 25 8 2.0217 -0.6975 1.1567 26 1 -0.3633 -1.0276 0.0181 27 1 -0.3633 0.5294 0.8808 28 1 -0.3634 0.4981 -0.8988 29 1 2.6597 -0.0826 -1.8589 30 1 1.2260 -1.1547 -1.8219 31 1 4.9879 -3.4633 -0.2519 32 1 5.1668 -2.8759 -3.7195 33 1 7.1229 -3.2802 -5.1275 34 1 12.7946 -3.9358 -4.0582 35 1 9.4814 -4.0285 -1.5971 36 1 7.5139 -3.6101 -0.2095 37 1 3.4649 -2.1874 1.4365 38 1 4.0708 -0.6540 0.7320 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132472565.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:20 Heat of formation + Delta-G solvation = -65.793163 kcal Electronic energy + Delta-G solvation = -20677.924865 eV Core-core repulsion = 17484.764996 eV Total energy + Delta-G solvation = -3193.159869 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.51803 -39.01877 -37.46595 -34.60324 -33.21735 -32.53792 -31.89493 -29.96704 -29.53981 -26.26561 -25.09794 -23.31539 -22.04786 -21.36311 -20.57647 -19.74860 -17.76806 -17.36761 -16.88666 -16.18612 -15.63712 -15.36224 -15.25046 -14.64766 -14.04873 -13.83993 -13.61358 -13.29866 -12.88579 -12.72754 -12.56221 -12.48107 -12.36865 -12.15612 -12.00628 -11.51222 -11.16580 -11.07781 -10.91702 -10.82687 -10.37982 -10.14567 -9.93792 -9.69046 -9.63466 -9.46299 -8.88644 -7.83893 -7.22335 -6.98071 -4.47786 2.27842 2.67899 2.93027 3.09617 3.21601 3.30456 3.36354 3.74573 3.94801 4.22103 4.46190 4.55368 4.74251 4.80342 4.97243 5.03152 5.19301 5.37167 5.41577 5.44713 5.47132 5.70336 5.77577 5.87445 5.89563 5.95424 6.03753 6.40547 6.63756 6.64909 6.69589 6.80683 7.13641 7.22880 7.42452 7.58960 7.79097 7.98784 8.07664 8.28917 8.49856 8.66526 8.75426 10.03858 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.041070 B = 0.003726 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.603674 B = 7512.506243 C = 7816.891487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.070 3.930 3 H 0.070 0.930 4 C -0.137 4.137 5 C -0.144 4.144 6 H 0.109 0.891 7 C 0.508 3.492 8 O -0.526 6.526 9 N -0.649 5.649 10 C -0.010 4.010 11 C -0.067 4.067 12 C -0.198 4.198 13 C 0.087 3.913 14 C -0.438 4.438 15 H 0.092 0.908 16 C 0.080 3.920 17 N -0.809 5.809 18 Si 0.915 3.085 19 H -0.272 1.272 20 H -0.293 1.293 21 H -0.240 1.240 22 C -0.227 4.227 23 C -0.088 4.088 24 C 0.060 3.940 25 O -0.372 6.372 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.396 0.604 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.286 0.714 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.870 4.261 10.062 19.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.013 3.987 3 H 0.088 0.912 4 C -0.175 4.175 5 C -0.166 4.166 6 H 0.127 0.873 7 C 0.294 3.706 8 O -0.402 6.402 9 N -0.292 5.292 10 C -0.102 4.102 11 C -0.087 4.087 12 C -0.218 4.218 13 C 0.084 3.916 14 C -0.466 4.466 15 H 0.109 0.891 16 C -0.139 4.139 17 N -0.434 5.434 18 Si 0.742 3.258 19 H -0.198 1.198 20 H -0.221 1.221 21 H -0.163 1.163 22 C -0.247 4.247 23 C -0.108 4.108 24 C -0.017 4.017 25 O -0.292 6.292 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.101 0.899 31 H 0.230 0.770 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.096 0.904 35 H 0.119 0.881 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.583 4.696 9.458 18.824 hybrid contribution 0.420 0.009 0.859 0.956 sum -15.163 4.705 10.317 18.933 Atomic orbital electron populations 1.21933 0.93628 1.02810 1.02360 1.22794 0.95151 0.96017 0.84755 0.91217 1.22961 0.99704 0.96907 0.97968 1.22874 0.95612 1.01650 0.96431 0.87252 1.20150 0.84586 0.79804 0.86049 1.90697 1.77551 1.45065 1.26898 1.42987 1.22011 1.39586 1.24604 1.17091 0.86276 1.16768 0.90042 1.20364 0.98272 0.98405 0.91641 1.20671 0.93494 1.09308 0.98339 1.17790 0.93462 0.88817 0.91526 1.19519 0.88953 1.36062 1.02055 0.89050 1.26214 0.95392 0.93971 0.98294 1.69676 0.99925 1.34991 1.38761 0.86271 0.78331 0.80679 0.80471 1.19829 1.22077 1.16333 1.20512 0.97184 1.12620 0.94388 1.20070 0.91692 1.01508 0.97506 1.23485 0.88229 0.96876 0.93143 1.88871 1.39258 1.67712 1.33320 0.91865 0.92000 0.91148 0.88515 0.89928 0.76994 0.87485 0.87822 0.90365 0.88093 0.88572 0.88263 0.91445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.37 37.16 0.35 -0.84 16 2 C 0.07 0.70 4.05 -26.15 -0.11 0.60 16 3 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.14 -1.50 6.04 -25.21 -0.15 -1.65 16 5 C -0.14 -1.62 3.52 -89.77 -0.32 -1.93 16 6 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 7 C 0.51 7.95 6.88 -10.99 -0.08 7.87 16 8 O -0.53 -10.40 13.14 5.55 0.07 -10.33 16 9 N -0.65 -10.21 5.30 -9.74 -0.05 -10.26 16 10 C -0.01 -0.19 6.29 -83.57 -0.53 -0.72 16 11 C -0.07 -1.49 8.57 -39.79 -0.34 -1.83 16 12 C -0.20 -4.74 9.74 -39.26 -0.38 -5.12 16 13 C 0.09 2.22 5.19 -106.80 -0.55 1.66 16 14 C -0.44 -11.80 9.60 -37.85 -0.36 -12.16 16 15 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 16 C 0.08 2.09 5.47 -17.34 -0.09 2.00 16 17 N -0.81 -21.50 13.93 55.55 0.77 -20.72 16 18 Si 0.91 20.80 24.36 -169.99 -4.14 16.66 16 19 H -0.27 -5.91 6.76 56.52 0.38 -5.53 16 20 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.24 -5.66 6.48 56.52 0.37 -5.29 16 22 C -0.23 -5.37 6.86 -39.26 -0.27 -5.64 16 23 C -0.09 -1.83 9.89 -39.79 -0.39 -2.22 16 24 C 0.06 0.62 7.15 38.21 0.27 0.89 16 25 O -0.37 -4.27 11.19 -35.23 -0.39 -4.66 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.10 1.24 6.90 -51.93 -0.36 0.88 16 30 H 0.08 0.79 7.70 -51.93 -0.40 0.39 16 31 H 0.40 4.70 8.81 -40.82 -0.36 4.34 16 32 H 0.11 2.33 6.41 -52.49 -0.34 2.00 16 33 H 0.10 2.36 8.06 -52.49 -0.42 1.94 16 34 H 0.29 6.87 8.30 -40.82 -0.34 6.53 16 35 H 0.10 2.36 4.21 -52.49 -0.22 2.14 16 36 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 37 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.75 8.04 -51.93 -0.42 0.33 16 LS Contribution 310.27 15.07 4.68 4.68 Total: -1.00 -30.14 310.27 -7.10 -37.25 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -5.09 Total: 6.50 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: -2.95 Total: -19.10 kcal Atomic # 7 Polarization: -31.71 SS G_CDS: 0.72 Total: -30.98 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.32 Total: -14.99 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.14 Total: 16.66 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.14 -7.10 -37.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132472565.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.546 kcal (2) G-P(sol) polarization free energy of solvation -30.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds