Wall clock time and date at job start Mon Mar 30 2020 02:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.86846 * 2 1 4 4 C 1.54102 * 109.87744 * 238.99271 * 2 1 3 5 5 C 1.54804 * 104.18902 * 238.39731 * 4 2 1 6 6 H 1.09003 * 110.90817 * 97.31790 * 5 4 2 7 7 C 1.50698 * 110.90773 * 220.88631 * 5 4 2 8 8 O 1.21285 * 119.99779 * 357.07330 * 7 5 4 9 9 N 1.34779 * 120.00196 * 177.07469 * 7 5 4 10 10 C 1.39235 * 120.00232 * 175.12330 * 9 7 5 11 11 C 1.39481 * 119.83333 * 326.27204 * 10 9 7 12 12 C 1.36368 * 120.16808 * 179.72108 * 11 10 9 13 13 C 1.40873 * 119.82946 * 0.54497 * 12 11 10 14 14 C 1.41156 * 120.16534 * 179.74931 * 13 12 11 15 15 H 1.07997 * 119.99627 * 331.20861 * 14 13 12 16 16 C 1.39904 * 120.00186 * 151.21176 * 14 13 12 17 17 N 1.30867 * 120.00365 * 166.76538 * 16 14 13 18 18 Si 1.86808 * 119.99789 * 346.76314 * 16 14 13 19 19 H 1.48498 * 109.46932 * 95.30571 * 18 16 14 20 20 H 1.48499 * 109.46895 * 215.30060 * 18 16 14 21 21 H 1.48495 * 109.47049 * 335.30294 * 18 16 14 22 22 C 1.40867 * 119.67063 * 359.72115 * 13 12 11 23 23 C 1.36370 * 119.82969 * 0.02562 * 22 13 12 24 24 C 1.54992 * 102.09205 * 339.11970 * 5 4 2 25 25 O 1.43739 * 110.00284 * 121.09094 * 2 1 3 26 26 H 1.09005 * 109.46854 * 181.00853 * 1 2 3 27 27 H 1.09003 * 109.46819 * 301.00747 * 1 2 3 28 28 H 1.08996 * 109.47385 * 61.00729 * 1 2 3 29 29 H 1.08999 * 110.48551 * 119.71569 * 4 2 1 30 30 H 1.09005 * 110.59746 * 357.12724 * 4 2 1 31 31 H 0.97008 * 119.99704 * 355.11532 * 9 7 5 32 32 H 1.08002 * 119.91538 * 359.97438 * 11 10 9 33 33 H 1.07997 * 120.09085 * 180.26753 * 12 11 10 34 34 H 0.97000 * 120.00279 * 180.02562 * 17 16 14 35 35 H 1.08001 * 120.08375 * 180.02562 * 22 13 12 36 36 H 1.07998 * 119.91608 * 180.02562 * 23 22 13 37 37 H 1.09004 * 110.61951 * 155.52745 * 24 5 4 38 38 H 1.08996 * 110.61828 * 278.52119 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0540 -0.7466 -1.2421 5 6 2.9226 -1.8882 -0.6603 6 1 2.3591 -2.8200 -0.6123 7 6 4.1847 -2.0669 -1.4642 8 8 4.3729 -1.3934 -2.4551 9 7 5.1043 -2.9751 -1.0820 10 6 6.2213 -3.2124 -1.8786 11 6 6.1148 -3.1261 -3.2666 12 6 7.2058 -3.3516 -4.0530 13 6 8.4400 -3.6838 -3.4607 14 6 9.5726 -3.9239 -4.2682 15 1 9.4499 -4.3102 -5.2692 16 6 10.8540 -3.6616 -3.7718 17 7 11.9061 -4.1174 -4.4026 18 14 11.0632 -2.6608 -2.2083 19 1 11.1937 -3.5776 -1.0475 20 1 12.2842 -1.8227 -2.3168 21 1 9.8780 -1.7866 -2.0180 22 6 8.5384 -3.7746 -2.0584 23 6 7.4399 -3.5413 -1.2847 24 6 3.2418 -1.3609 0.7618 25 8 2.0217 -0.6975 1.1567 26 1 -0.3633 -1.0276 0.0181 27 1 -0.3633 0.5294 0.8808 28 1 -0.3634 0.4981 -0.8988 29 1 2.6597 -0.0826 -1.8589 30 1 1.2260 -1.1547 -1.8219 31 1 4.9879 -3.4633 -0.2519 32 1 5.1668 -2.8759 -3.7195 33 1 7.1229 -3.2802 -5.1275 34 1 12.7946 -3.9358 -4.0582 35 1 9.4814 -4.0285 -1.5971 36 1 7.5139 -3.6101 -0.2095 37 1 3.4649 -2.1874 1.4365 38 1 4.0708 -0.6540 0.7320 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132472565.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:19 Heat of formation + Delta-G solvation = -85.944682 kcal Electronic energy + Delta-G solvation = -20678.798700 eV Core-core repulsion = 17484.764996 eV Total energy + Delta-G solvation = -3194.033704 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.70726 -40.23347 -39.05229 -36.23595 -34.97248 -33.43823 -32.80957 -31.77062 -31.21667 -27.25992 -26.53340 -24.60900 -23.65090 -22.52501 -22.02339 -21.00007 -19.46670 -18.78874 -18.36348 -17.18953 -17.02574 -16.47487 -16.39125 -15.95338 -15.76919 -15.26012 -14.89011 -14.71094 -14.32866 -14.22815 -14.13776 -13.81242 -13.45565 -13.31307 -12.97037 -12.91589 -12.65385 -12.38240 -12.17577 -11.91361 -11.83385 -11.75197 -11.54380 -11.36981 -10.97484 -10.73692 -10.56003 -9.63265 -8.98668 -8.89978 -6.46182 0.58546 0.84575 1.23503 1.38471 1.48851 1.65061 2.10948 2.17432 2.61060 2.87130 3.32322 3.48202 3.74762 3.82106 3.99702 4.14557 4.17800 4.24281 4.27275 4.46315 4.62536 4.67317 4.69221 4.82564 4.88925 4.94152 4.95887 5.00591 5.09231 5.10739 5.30926 5.34394 5.47357 5.67550 5.79688 5.86214 5.89588 6.21641 6.34069 6.60863 6.70457 6.78276 7.29628 8.18001 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.041070 B = 0.003726 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.603674 B = 7512.506243 C = 7816.891487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.068 3.932 3 H 0.067 0.933 4 C -0.138 4.138 5 C -0.133 4.133 6 H 0.139 0.861 7 C 0.511 3.489 8 O -0.568 6.568 9 N -0.641 5.641 10 C 0.018 3.982 11 C -0.078 4.078 12 C -0.212 4.212 13 C 0.066 3.934 14 C -0.478 4.478 15 H 0.054 0.946 16 C 0.042 3.958 17 N -0.852 5.852 18 Si 0.971 3.029 19 H -0.249 1.249 20 H -0.283 1.283 21 H -0.253 1.253 22 C -0.233 4.233 23 C -0.088 4.088 24 C 0.061 3.939 25 O -0.382 6.382 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.421 0.579 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.294 0.706 35 H 0.106 0.894 36 H 0.142 0.858 37 H 0.130 0.870 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.159 4.593 13.640 23.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 H 0.085 0.915 4 C -0.176 4.176 5 C -0.154 4.154 6 H 0.157 0.843 7 C 0.299 3.701 8 O -0.447 6.447 9 N -0.286 5.286 10 C -0.075 4.075 11 C -0.098 4.098 12 C -0.232 4.232 13 C 0.063 3.937 14 C -0.508 4.508 15 H 0.073 0.927 16 C -0.172 4.172 17 N -0.479 5.479 18 Si 0.794 3.206 19 H -0.174 1.174 20 H -0.210 1.210 21 H -0.177 1.177 22 C -0.252 4.252 23 C -0.108 4.108 24 C -0.016 4.016 25 O -0.302 6.302 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.115 0.885 31 H 0.259 0.741 32 H 0.129 0.871 33 H 0.116 0.884 34 H 0.105 0.895 35 H 0.123 0.877 36 H 0.160 0.840 37 H 0.147 0.853 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.900 5.006 13.071 22.723 hybrid contribution 0.834 -0.042 -0.226 0.865 sum -17.066 4.964 12.845 21.929 Atomic orbital electron populations 1.21928 0.91945 1.03332 1.03179 1.22873 0.96491 0.95634 0.83892 0.91497 1.22967 0.99802 0.96591 0.98288 1.22888 0.93223 1.03136 0.96177 0.84349 1.20926 0.85237 0.78458 0.85472 1.90700 1.78458 1.46555 1.29004 1.42937 1.20594 1.40093 1.25020 1.17254 0.87739 1.12712 0.89813 1.20495 0.97821 0.98676 0.92841 1.20783 0.93994 1.09780 0.98616 1.17899 0.93217 0.89846 0.92696 1.19469 0.90725 1.39270 1.01287 0.92739 1.26895 0.94661 0.94510 1.01106 1.69707 1.00559 1.36956 1.40687 0.85434 0.77910 0.79406 0.77811 1.17434 1.20992 1.17656 1.20689 0.98549 1.12348 0.93650 1.20462 0.90509 1.00136 0.99686 1.23588 0.87637 0.97488 0.92902 1.88876 1.39558 1.67883 1.33875 0.91444 0.91689 0.89921 0.90916 0.88536 0.74087 0.87147 0.88394 0.89522 0.87677 0.84011 0.85259 0.92515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.37 71.98 0.67 -1.21 16 2 C 0.07 1.19 4.05 30.97 0.13 1.31 16 3 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 4 C -0.14 -2.67 6.04 31.58 0.19 -2.48 16 5 C -0.13 -2.48 3.52 -10.24 -0.04 -2.52 16 6 H 0.14 1.89 8.14 -2.39 -0.02 1.87 16 7 C 0.51 14.42 6.88 87.66 0.60 15.02 16 8 O -0.57 -21.64 13.14 -3.05 -0.04 -21.68 16 9 N -0.64 -17.56 5.30 -303.11 -1.61 -19.17 16 10 C 0.02 0.70 6.29 38.57 0.24 0.94 16 11 C -0.08 -3.43 8.57 22.13 0.19 -3.24 16 12 C -0.21 -10.38 9.74 22.48 0.22 -10.16 16 13 C 0.07 3.43 5.19 -21.27 -0.11 3.32 16 14 C -0.48 -27.25 9.60 23.39 0.22 -27.03 16 15 H 0.05 3.35 8.06 -2.91 -0.02 3.33 16 16 C 0.04 2.28 5.47 85.24 0.47 2.74 16 17 N -0.85 -47.15 13.93 21.82 0.30 -46.85 16 18 Si 0.97 42.70 24.36 68.60 1.67 44.37 16 19 H -0.25 -9.97 6.76 99.48 0.67 -9.30 16 20 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 21 H -0.25 -11.49 6.48 99.48 0.64 -10.84 16 22 C -0.23 -10.66 6.86 22.48 0.15 -10.50 16 23 C -0.09 -3.36 9.89 22.13 0.22 -3.14 16 24 C 0.06 1.01 7.15 72.66 0.52 1.53 16 25 O -0.38 -7.43 11.19 -148.98 -1.67 -9.10 16 26 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.07 1.79 6.90 -2.39 -0.02 1.77 16 30 H 0.10 1.57 7.70 -2.38 -0.02 1.55 16 31 H 0.42 7.68 8.81 -92.70 -0.82 6.86 16 32 H 0.11 4.75 6.41 -2.91 -0.02 4.73 16 33 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 34 H 0.29 14.57 8.30 -92.71 -0.77 13.80 16 35 H 0.11 4.70 4.21 -2.91 -0.01 4.69 16 36 H 0.14 4.14 8.06 -2.91 -0.02 4.11 16 37 H 0.13 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.06 1.08 8.04 -2.39 -0.02 1.06 16 Total: -1.00 -68.17 310.27 2.51 -65.66 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: 0.17 Total: 22.17 kcal Atomic # 6 Polarization: -39.09 SS G_CDS: 3.68 Total: -35.41 kcal Atomic # 7 Polarization: -64.71 SS G_CDS: -1.30 Total: -66.01 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -1.71 Total: -30.78 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 1.67 Total: 44.37 kcal Total: -68.17 2.51 -65.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132472565.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.286 kcal (2) G-P(sol) polarization free energy of solvation -68.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds