Wall clock time and date at job start Mon Mar 30 2020 02:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 110.55388 * 2 1 4 4 C 1.55000 * 110.62002 * 123.04835 * 2 1 3 5 5 C 1.54810 * 102.09341 * 155.52282 * 4 2 1 6 6 H 1.09000 * 110.60257 * 97.85024 * 5 4 2 7 7 C 1.50695 * 110.49067 * 220.44407 * 5 4 2 8 8 O 1.21279 * 119.99992 * 356.22582 * 7 5 4 9 9 N 1.34781 * 120.00314 * 176.22024 * 7 5 4 10 10 C 1.39234 * 120.00154 * 175.71016 * 9 7 5 11 11 C 1.39480 * 119.83148 * 215.28415 * 10 9 7 12 12 C 1.36382 * 120.16562 * 180.02562 * 11 10 9 13 13 C 1.40864 * 119.82985 * 0.02562 * 12 11 10 14 14 C 1.41147 * 120.16695 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00675 * 214.78328 * 14 13 12 16 16 C 1.39909 * 119.99760 * 34.78236 * 14 13 12 17 17 N 1.30866 * 120.00006 * 355.55675 * 16 14 13 18 18 Si 1.86805 * 120.00035 * 175.55700 * 16 14 13 19 19 H 1.48507 * 109.46981 * 269.99822 * 18 16 14 20 20 H 1.48493 * 109.46936 * 29.99782 * 18 16 14 21 21 H 1.48500 * 109.46964 * 150.00177 * 18 16 14 22 22 C 1.40871 * 119.67186 * 0.27348 * 13 12 11 23 23 C 1.36380 * 119.82810 * 359.46479 * 22 13 12 24 24 C 1.54099 * 104.18760 * 339.12334 * 5 4 2 25 25 O 1.43748 * 107.29566 * 357.96657 * 24 5 4 26 26 H 1.08998 * 109.47180 * 181.42497 * 1 2 3 27 27 H 1.09002 * 109.46990 * 301.42719 * 1 2 3 28 28 H 1.08999 * 109.47293 * 61.42533 * 1 2 3 29 29 H 1.09003 * 110.90124 * 37.32765 * 4 2 1 30 30 H 1.08990 * 110.90899 * 273.72263 * 4 2 1 31 31 H 0.96999 * 119.99753 * 355.70914 * 9 7 5 32 32 H 1.07994 * 119.92013 * 0.02562 * 11 10 9 33 33 H 1.07997 * 120.08321 * 179.97438 * 12 11 10 34 34 H 0.97007 * 119.99989 * 180.02562 * 17 16 14 35 35 H 1.08002 * 120.08817 * 179.72706 * 22 13 12 36 36 H 1.08000 * 119.91266 * 180.27370 * 23 22 13 37 37 H 1.08999 * 109.87974 * 117.39346 * 24 5 4 38 38 H 1.09001 * 109.87854 * 238.39230 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9127 1.0207 0.0000 4 6 2.0758 -0.7911 1.2160 5 6 3.4795 -1.2178 0.7217 6 1 4.2423 -0.5365 1.0986 7 6 3.7809 -2.6320 1.1462 8 8 2.9939 -3.2366 1.8433 9 7 4.9250 -3.2249 0.7511 10 6 5.2458 -4.4977 1.2155 11 6 6.5771 -4.8294 1.4668 12 6 6.8992 -6.0743 1.9212 13 6 5.8834 -7.0262 2.1362 14 6 6.2086 -8.3165 2.6069 15 1 5.6425 -9.1727 2.2709 16 6 7.2645 -8.4865 3.5090 17 7 8.0056 -7.4630 3.8492 18 14 7.6164 -10.1745 4.2278 19 1 6.8433 -10.3486 5.4837 20 1 7.2179 -11.2207 3.2522 21 1 9.0675 -10.2958 4.5188 22 6 4.5418 -6.6858 1.8741 23 6 4.2346 -5.4352 1.4250 24 6 3.3839 -1.1242 -0.8135 25 8 2.0383 -0.7336 -1.1349 26 1 -0.3633 -1.0273 0.0256 27 1 -0.3633 0.5359 0.8769 28 1 -0.3634 0.4915 -0.9025 29 1 1.4549 -1.6627 1.4234 30 1 2.1509 -0.1508 2.0947 31 1 5.5248 -2.7649 0.1433 32 1 7.3548 -4.0987 1.3011 33 1 7.9304 -6.3298 2.1150 34 1 8.7379 -7.5809 4.4744 35 1 3.7581 -7.4118 2.0324 36 1 3.2061 -5.1713 1.2279 37 1 4.0853 -0.3765 -1.1836 38 1 3.6071 -2.0938 -1.2585 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132472768.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:22 Heat of formation + Delta-G solvation = -66.687710 kcal Electronic energy + Delta-G solvation = -20614.498378 eV Core-core repulsion = 17421.299719 eV Total energy + Delta-G solvation = -3193.198659 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.43986 -38.81598 -37.16285 -34.49666 -33.05357 -32.40324 -31.79120 -29.59490 -28.83011 -26.30436 -25.11016 -23.20037 -21.58078 -21.24516 -20.60803 -19.37497 -17.39658 -17.26069 -16.80826 -16.22370 -15.69763 -15.19653 -14.95113 -14.52900 -13.92825 -13.79171 -13.44579 -13.03949 -12.74088 -12.52994 -12.37402 -12.13812 -11.97205 -11.69446 -11.41393 -11.37732 -11.18429 -11.13080 -11.02268 -10.94555 -10.74911 -10.09097 -9.84101 -9.49859 -9.43061 -9.11079 -8.89497 -7.56411 -6.88653 -6.63253 -4.35746 2.51127 2.98831 3.07605 3.09043 3.13147 3.28393 3.60273 3.69679 3.97195 4.27756 4.65034 4.69127 4.81004 4.85360 4.98964 5.15763 5.27950 5.43728 5.48230 5.57748 5.65313 5.70227 5.79204 5.95920 6.11949 6.17474 6.43294 6.71337 6.74016 6.90171 7.05518 7.19001 7.28144 7.62338 7.72290 7.84821 8.04912 8.23349 8.30003 8.60429 8.71027 8.91476 8.98407 10.27824 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.049644 B = 0.003354 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.875777 B = 8346.624857 C = 8555.564759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 H 0.070 0.930 4 C -0.135 4.135 5 C -0.146 4.146 6 H 0.108 0.892 7 C 0.507 3.493 8 O -0.525 6.525 9 N -0.650 5.650 10 C 0.001 3.999 11 C -0.120 4.120 12 C -0.142 4.142 13 C 0.101 3.899 14 C -0.461 4.461 15 H 0.076 0.924 16 C 0.069 3.931 17 N -0.812 5.812 18 Si 0.916 3.084 19 H -0.270 1.270 20 H -0.263 1.263 21 H -0.278 1.278 22 C -0.206 4.206 23 C -0.085 4.085 24 C 0.058 3.942 25 O -0.372 6.372 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.395 0.605 32 H 0.091 0.909 33 H 0.132 0.868 34 H 0.278 0.722 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.067 0.933 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.420 13.357 -6.011 15.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.013 3.987 3 H 0.088 0.912 4 C -0.172 4.172 5 C -0.168 4.168 6 H 0.126 0.874 7 C 0.293 3.707 8 O -0.402 6.402 9 N -0.293 5.293 10 C -0.091 4.091 11 C -0.140 4.140 12 C -0.162 4.162 13 C 0.098 3.902 14 C -0.491 4.491 15 H 0.094 0.906 16 C -0.146 4.146 17 N -0.439 5.439 18 Si 0.741 3.259 19 H -0.195 1.195 20 H -0.187 1.187 21 H -0.203 1.203 22 C -0.226 4.226 23 C -0.105 4.105 24 C -0.019 4.019 25 O -0.291 6.291 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.101 0.899 31 H 0.229 0.771 32 H 0.109 0.891 33 H 0.150 0.850 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.125 0.875 37 H 0.085 0.915 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.895 12.944 -5.545 15.266 hybrid contribution 0.832 -0.323 0.447 0.998 sum -5.063 12.621 -5.098 14.523 Atomic orbital electron populations 1.21768 0.93007 1.03271 1.02302 1.23184 0.95486 0.95056 0.84973 0.91237 1.23159 0.94388 1.01683 0.98017 1.22735 1.00574 0.96006 0.97502 0.87407 1.20192 0.82246 0.87532 0.80686 1.90676 1.46932 1.64891 1.37662 1.42995 1.22212 1.17108 1.46976 1.17274 0.93949 0.84294 1.13618 1.20315 0.93025 0.97727 1.02943 1.21191 1.00647 0.92824 1.01528 1.17725 0.90335 0.93619 0.88505 1.19513 1.12848 0.93996 1.22791 0.90569 1.25886 0.94338 0.98448 0.95890 1.69762 1.15211 1.31124 1.27802 0.86188 0.77945 0.81957 0.79817 1.19549 1.18692 1.20323 1.20812 0.96059 0.95802 1.09916 1.20397 0.97377 0.92629 1.00060 1.23117 0.85136 1.01202 0.92494 1.88894 1.27516 1.73721 1.38980 0.91512 0.91040 0.91903 0.88249 0.89889 0.77138 0.89090 0.85024 0.91140 0.88577 0.87506 0.91468 0.89321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.66 37.15 0.36 -0.96 16 2 C 0.07 0.73 3.98 -25.68 -0.10 0.62 16 3 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.13 -1.57 5.93 -24.72 -0.15 -1.72 16 5 C -0.15 -1.76 3.45 -90.25 -0.31 -2.08 16 6 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 7 C 0.51 8.67 6.81 -10.99 -0.07 8.60 16 8 O -0.53 -11.22 12.89 5.56 0.07 -11.15 16 9 N -0.65 -11.19 5.15 -9.74 -0.05 -11.24 16 10 C 0.00 0.02 6.30 -83.57 -0.53 -0.51 16 11 C -0.12 -2.72 9.90 -39.79 -0.39 -3.11 16 12 C -0.14 -3.64 8.61 -39.26 -0.34 -3.98 16 13 C 0.10 2.71 5.55 -106.80 -0.59 2.11 16 14 C -0.46 -12.32 9.02 -37.85 -0.34 -12.67 16 15 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 16 C 0.07 1.76 5.42 -17.34 -0.09 1.66 16 17 N -0.81 -21.11 10.60 55.55 0.59 -20.52 16 18 Si 0.92 19.03 29.56 -169.99 -5.03 14.00 16 19 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 20 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 21 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 22 C -0.21 -5.25 9.74 -39.26 -0.38 -5.63 16 23 C -0.08 -2.04 8.61 -39.79 -0.34 -2.39 16 24 C 0.06 0.64 7.25 37.73 0.27 0.91 16 25 O -0.37 -4.74 11.22 -35.23 -0.40 -5.14 16 26 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.10 1.42 6.84 -51.93 -0.35 1.06 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.40 5.24 8.74 -40.82 -0.36 4.88 16 32 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 33 H 0.13 3.48 6.13 -52.49 -0.32 3.16 16 34 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 35 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 36 H 0.11 2.56 6.23 -52.49 -0.33 2.23 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 1.04 7.59 -51.93 -0.39 0.65 16 LS Contribution 315.74 15.07 4.76 4.76 Total: -1.00 -30.78 315.74 -8.17 -38.96 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -5.11 Total: 9.45 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: -3.01 Total: -19.13 kcal Atomic # 7 Polarization: -32.30 SS G_CDS: 0.54 Total: -31.76 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.32 Total: -16.29 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.78 -8.17 -38.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132472768.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.731 kcal (2) G-P(sol) polarization free energy of solvation -30.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds