Wall clock time and date at job start Mon Mar 30 2020 02:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 110.55388 * 2 1 4 4 C 1.55000 * 110.62002 * 123.04835 * 2 1 3 5 5 C 1.54810 * 102.09341 * 155.52282 * 4 2 1 6 6 H 1.09000 * 110.60257 * 97.85024 * 5 4 2 7 7 C 1.50695 * 110.49067 * 220.44407 * 5 4 2 8 8 O 1.21279 * 119.99992 * 356.22582 * 7 5 4 9 9 N 1.34781 * 120.00314 * 176.22024 * 7 5 4 10 10 C 1.39234 * 120.00154 * 175.71016 * 9 7 5 11 11 C 1.39480 * 119.83148 * 215.28415 * 10 9 7 12 12 C 1.36382 * 120.16562 * 180.02562 * 11 10 9 13 13 C 1.40864 * 119.82985 * 0.02562 * 12 11 10 14 14 C 1.41147 * 120.16695 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00675 * 214.78328 * 14 13 12 16 16 C 1.39909 * 119.99760 * 34.78236 * 14 13 12 17 17 N 1.30866 * 120.00006 * 355.55675 * 16 14 13 18 18 Si 1.86805 * 120.00035 * 175.55700 * 16 14 13 19 19 H 1.48507 * 109.46981 * 269.99822 * 18 16 14 20 20 H 1.48493 * 109.46936 * 29.99782 * 18 16 14 21 21 H 1.48500 * 109.46964 * 150.00177 * 18 16 14 22 22 C 1.40871 * 119.67186 * 0.27348 * 13 12 11 23 23 C 1.36380 * 119.82810 * 359.46479 * 22 13 12 24 24 C 1.54099 * 104.18760 * 339.12334 * 5 4 2 25 25 O 1.43748 * 107.29566 * 357.96657 * 24 5 4 26 26 H 1.08998 * 109.47180 * 181.42497 * 1 2 3 27 27 H 1.09002 * 109.46990 * 301.42719 * 1 2 3 28 28 H 1.08999 * 109.47293 * 61.42533 * 1 2 3 29 29 H 1.09003 * 110.90124 * 37.32765 * 4 2 1 30 30 H 1.08990 * 110.90899 * 273.72263 * 4 2 1 31 31 H 0.96999 * 119.99753 * 355.70914 * 9 7 5 32 32 H 1.07994 * 119.92013 * 0.02562 * 11 10 9 33 33 H 1.07997 * 120.08321 * 179.97438 * 12 11 10 34 34 H 0.97007 * 119.99989 * 180.02562 * 17 16 14 35 35 H 1.08002 * 120.08817 * 179.72706 * 22 13 12 36 36 H 1.08000 * 119.91266 * 180.27370 * 23 22 13 37 37 H 1.08999 * 109.87974 * 117.39346 * 24 5 4 38 38 H 1.09001 * 109.87854 * 238.39230 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9127 1.0207 0.0000 4 6 2.0758 -0.7911 1.2160 5 6 3.4795 -1.2178 0.7217 6 1 4.2423 -0.5365 1.0986 7 6 3.7809 -2.6320 1.1462 8 8 2.9939 -3.2366 1.8433 9 7 4.9250 -3.2249 0.7511 10 6 5.2458 -4.4977 1.2155 11 6 6.5771 -4.8294 1.4668 12 6 6.8992 -6.0743 1.9212 13 6 5.8834 -7.0262 2.1362 14 6 6.2086 -8.3165 2.6069 15 1 5.6425 -9.1727 2.2709 16 6 7.2645 -8.4865 3.5090 17 7 8.0056 -7.4630 3.8492 18 14 7.6164 -10.1745 4.2278 19 1 6.8433 -10.3486 5.4837 20 1 7.2179 -11.2207 3.2522 21 1 9.0675 -10.2958 4.5188 22 6 4.5418 -6.6858 1.8741 23 6 4.2346 -5.4352 1.4250 24 6 3.3839 -1.1242 -0.8135 25 8 2.0383 -0.7336 -1.1349 26 1 -0.3633 -1.0273 0.0256 27 1 -0.3633 0.5359 0.8769 28 1 -0.3634 0.4915 -0.9025 29 1 1.4549 -1.6627 1.4234 30 1 2.1509 -0.1508 2.0947 31 1 5.5248 -2.7649 0.1433 32 1 7.3548 -4.0987 1.3011 33 1 7.9304 -6.3298 2.1150 34 1 8.7379 -7.5809 4.4744 35 1 3.7581 -7.4118 2.0324 36 1 3.2061 -5.1713 1.2279 37 1 4.0853 -0.3765 -1.1836 38 1 3.6071 -2.0938 -1.2585 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132472768.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:22 Heat of formation + Delta-G solvation = -86.085409 kcal Electronic energy + Delta-G solvation = -20615.339526 eV Core-core repulsion = 17421.299719 eV Total energy + Delta-G solvation = -3194.039807 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.69053 -40.09128 -38.86253 -36.21170 -34.79343 -33.36796 -32.75269 -31.49365 -30.64596 -27.36980 -26.65374 -24.52274 -23.25232 -22.47963 -22.05706 -20.80797 -19.28091 -18.57019 -17.96778 -17.63386 -17.03064 -16.60190 -16.08302 -15.90071 -15.63761 -15.05147 -14.85629 -14.52447 -14.27702 -14.01804 -13.64559 -13.36640 -13.29218 -13.15031 -12.90949 -12.77305 -12.75904 -12.50708 -12.23400 -12.08290 -11.83337 -11.77201 -11.40986 -11.25239 -10.92394 -10.67624 -10.45753 -9.49231 -8.75925 -8.52269 -6.35074 0.76393 1.11151 1.38960 1.43383 1.52438 1.73383 2.22159 2.26679 2.78136 2.86422 3.32687 3.63925 3.72127 3.90029 4.01287 4.20000 4.29698 4.37590 4.47353 4.51924 4.61177 4.69595 4.85262 4.87120 4.91750 4.99941 5.10276 5.13007 5.19313 5.28844 5.32697 5.41575 5.67340 5.88289 5.92232 6.00381 6.11682 6.36937 6.64584 6.68938 6.94890 6.97739 7.34466 8.40586 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.049644 B = 0.003354 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.875777 B = 8346.624857 C = 8555.564759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.072 3.928 3 H 0.100 0.900 4 C -0.138 4.138 5 C -0.135 4.135 6 H 0.146 0.854 7 C 0.504 3.496 8 O -0.572 6.572 9 N -0.642 5.642 10 C 0.018 3.982 11 C -0.117 4.117 12 C -0.159 4.159 13 C 0.069 3.931 14 C -0.499 4.499 15 H 0.072 0.928 16 C 0.028 3.972 17 N -0.840 5.840 18 Si 0.989 3.011 19 H -0.268 1.268 20 H -0.259 1.259 21 H -0.265 1.265 22 C -0.223 4.223 23 C -0.098 4.098 24 C 0.058 3.942 25 O -0.397 6.397 26 H 0.045 0.955 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.418 0.582 32 H 0.128 0.872 33 H 0.120 0.880 34 H 0.285 0.715 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.696 15.656 -6.387 17.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.015 3.985 3 H 0.117 0.883 4 C -0.176 4.176 5 C -0.156 4.156 6 H 0.164 0.836 7 C 0.293 3.707 8 O -0.451 6.451 9 N -0.287 5.287 10 C -0.075 4.075 11 C -0.137 4.137 12 C -0.179 4.179 13 C 0.066 3.934 14 C -0.529 4.529 15 H 0.090 0.910 16 C -0.184 4.184 17 N -0.468 5.468 18 Si 0.810 3.190 19 H -0.193 1.193 20 H -0.183 1.183 21 H -0.189 1.189 22 C -0.243 4.243 23 C -0.118 4.118 24 C -0.019 4.019 25 O -0.317 6.317 26 H 0.065 0.935 27 H 0.109 0.891 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.121 0.879 31 H 0.256 0.744 32 H 0.145 0.855 33 H 0.138 0.862 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.164 15.290 -5.961 17.204 hybrid contribution 0.510 -0.890 0.508 1.145 sum -4.653 14.400 -5.453 16.086 Atomic orbital electron populations 1.21812 0.92580 1.02410 1.03665 1.23369 0.96000 0.95825 0.83319 0.88272 1.23183 0.93711 1.01022 0.99691 1.22796 1.01784 0.92477 0.98551 0.83624 1.21177 0.80922 0.89297 0.79322 1.90668 1.48256 1.66543 1.39675 1.42929 1.23035 1.15428 1.47318 1.17333 0.93259 0.85809 1.11138 1.20579 0.94173 0.97362 1.01548 1.21190 0.99867 0.94093 1.02775 1.18029 0.91074 0.94544 0.89722 1.19734 1.14490 0.94071 1.24635 0.91005 1.26736 0.93569 1.02499 0.95582 1.69818 1.15645 1.33030 1.28281 0.85100 0.78278 0.76888 0.78755 1.19294 1.18306 1.18893 1.20927 0.95895 0.96636 1.10807 1.20499 0.97908 0.92745 1.00667 1.23235 0.85364 1.01959 0.91331 1.88877 1.28468 1.74349 1.40029 0.93547 0.89078 0.91117 0.91659 0.87867 0.74400 0.85460 0.86206 0.90409 0.88774 0.87794 0.87652 0.90576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.66 71.98 0.70 -1.70 16 2 C 0.07 1.27 3.98 31.28 0.12 1.40 16 3 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 4 C -0.14 -2.93 5.93 31.90 0.19 -2.74 16 5 C -0.13 -2.82 3.45 -10.55 -0.04 -2.86 16 6 H 0.15 2.03 8.14 -2.39 -0.02 2.01 16 7 C 0.50 16.48 6.81 87.65 0.60 17.08 16 8 O -0.57 -24.59 12.89 -3.02 -0.04 -24.63 16 9 N -0.64 -20.80 5.15 -303.12 -1.56 -22.36 16 10 C 0.02 0.79 6.30 38.56 0.24 1.03 16 11 C -0.12 -5.19 9.90 22.14 0.22 -4.97 16 12 C -0.16 -8.32 8.61 22.48 0.19 -8.13 16 13 C 0.07 3.83 5.55 -21.28 -0.12 3.71 16 14 C -0.50 -27.71 9.02 23.39 0.21 -27.50 16 15 H 0.07 3.87 7.85 -2.91 -0.02 3.85 16 16 C 0.03 1.45 5.42 85.24 0.46 1.91 16 17 N -0.84 -44.38 10.60 21.82 0.23 -44.14 16 18 Si 0.99 39.36 29.56 68.60 2.03 41.39 16 19 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 20 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 21 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 22 C -0.22 -11.85 9.74 22.48 0.22 -11.63 16 23 C -0.10 -4.84 8.61 22.14 0.19 -4.65 16 24 C 0.06 1.09 7.25 72.35 0.52 1.62 16 25 O -0.40 -9.18 11.22 -148.98 -1.67 -10.85 16 26 H 0.05 0.93 8.13 -2.39 -0.02 0.91 16 27 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.06 1.86 6.84 -2.39 -0.02 1.85 16 30 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.42 9.70 8.74 -92.71 -0.81 8.89 16 32 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 33 H 0.12 6.50 6.13 -2.91 -0.02 6.48 16 34 H 0.29 13.65 8.30 -92.70 -0.77 12.88 16 35 H 0.09 4.85 8.06 -2.91 -0.02 4.82 16 36 H 0.10 5.14 6.23 -2.91 -0.02 5.12 16 37 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.08 1.61 7.59 -2.39 -0.02 1.59 16 Total: -1.00 -69.99 315.74 2.97 -67.02 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: 0.27 Total: 31.00 kcal Atomic # 6 Polarization: -41.14 SS G_CDS: 3.71 Total: -37.43 kcal Atomic # 7 Polarization: -65.18 SS G_CDS: -1.33 Total: -66.51 kcal Atomic # 8 Polarization: -33.77 SS G_CDS: -1.71 Total: -35.48 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Total: -69.99 2.97 -67.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132472768.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.065 kcal (2) G-P(sol) polarization free energy of solvation -69.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds