Wall clock time and date at job start Mon Mar 30 2020 02:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08990 * 109.52745 * 2 1 4 4 C 1.53046 * 109.49842 * 239.91709 * 2 1 3 5 5 C 1.53031 * 109.53726 * 178.68561 * 4 2 1 6 6 C 1.53196 * 109.31477 * 61.36734 * 5 4 2 7 7 N 1.46927 * 108.77413 * 305.36304 * 6 5 4 8 8 S 1.65597 * 120.63280 * 233.60597 * 7 6 5 9 9 O 1.42093 * 104.27698 * 206.07232 * 8 7 6 10 10 O 1.42100 * 104.27770 * 333.93386 * 8 7 6 11 11 C 1.81400 * 104.44911 * 90.00117 * 8 7 6 12 12 C 1.52998 * 109.47179 * 180.02562 * 11 8 7 13 13 C 1.50703 * 109.46991 * 180.02562 * 12 11 8 14 14 H 1.07994 * 120.00417 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99495 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00397 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99570 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47440 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47138 * 120.00042 * 17 15 13 20 20 H 1.48504 * 109.47291 * 240.00133 * 17 15 13 21 21 C 1.46923 * 118.73554 * 53.60901 * 7 6 5 22 22 H 1.09009 * 109.58590 * 186.60449 * 21 7 6 23 23 C 1.53001 * 109.59076 * 66.17941 * 21 7 6 24 24 H 1.09003 * 109.47396 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47538 * 300.08299 * 1 2 3 26 26 H 1.09004 * 109.47024 * 60.08285 * 1 2 3 27 27 H 1.08995 * 109.46071 * 298.70848 * 4 2 1 28 28 H 1.09006 * 109.45657 * 58.67666 * 4 2 1 29 29 H 1.09004 * 109.49984 * 181.32240 * 5 4 2 30 30 H 1.09000 * 109.50061 * 301.41377 * 5 4 2 31 31 H 1.08993 * 109.58448 * 65.15176 * 6 5 4 32 32 H 1.08998 * 109.58752 * 185.57550 * 6 5 4 33 33 H 1.09000 * 109.47121 * 300.00019 * 11 8 7 34 34 H 1.09001 * 109.47431 * 59.99855 * 11 8 7 35 35 H 1.09000 * 109.46783 * 299.99826 * 12 11 8 36 36 H 1.08993 * 109.47307 * 59.99769 * 12 11 8 37 37 H 0.96995 * 119.99723 * 180.02562 * 16 15 13 38 38 H 1.09005 * 109.46802 * 300.70847 * 23 21 7 39 39 H 1.09000 * 109.46960 * 60.70432 * 23 21 7 40 40 H 1.08999 * 109.46930 * 180.71040 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0272 0.0000 4 6 2.0408 -0.7232 -1.2484 5 6 3.5708 -0.6951 -1.2660 6 6 4.1052 -1.4268 -0.0307 7 7 3.5045 -0.8292 1.1696 8 16 4.4586 -0.2848 2.4088 9 8 3.6256 -0.3720 3.5567 10 8 5.6451 -1.0597 2.3041 11 6 4.7924 1.4495 1.9948 12 6 5.6766 2.0712 3.0776 13 6 5.9534 3.5122 2.7339 14 1 5.5404 3.9415 1.8331 15 6 6.7339 4.2825 3.5696 16 7 7.2365 3.7600 4.6669 17 14 7.0776 6.0685 3.1432 18 1 6.4027 6.4112 1.8656 19 1 6.5621 6.9440 4.2262 20 1 8.5418 6.2700 2.9985 21 6 2.0413 -0.7239 1.2496 22 1 1.7637 -0.1580 2.1389 23 6 1.4291 -2.1245 1.3176 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5151 0.8892 26 1 -0.3633 0.5126 -0.8908 27 1 1.6967 -1.7573 -1.2353 28 1 1.6583 -0.2244 -2.1390 29 1 3.9334 -1.1897 -2.1671 30 1 3.9159 0.3387 -1.2540 31 1 3.8374 -2.4819 -0.0867 32 1 5.1895 -1.3248 0.0138 33 1 5.3044 1.5016 1.0339 34 1 3.8514 1.9964 1.9352 35 1 5.1649 2.0191 4.0386 36 1 6.6174 1.5243 3.1368 37 1 7.7853 4.3020 5.2549 38 1 1.7141 -2.6890 0.4297 39 1 1.7941 -2.6377 2.2072 40 1 0.3430 -2.0444 1.3641 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173290592.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:40 Heat of formation + Delta-G solvation = -96.646997 kcal Electronic energy + Delta-G solvation = -20672.741534 eV Core-core repulsion = 17613.687694 eV Total energy + Delta-G solvation = -3059.053840 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.33744 -36.63959 -35.40874 -33.88502 -33.57050 -32.46562 -31.14109 -28.50832 -26.39629 -25.56184 -23.48498 -22.25148 -21.53008 -19.32727 -18.17948 -17.56108 -16.52864 -16.04849 -15.47348 -15.25386 -14.69720 -14.54093 -14.29940 -13.94753 -13.43507 -13.32176 -12.98557 -12.89956 -12.52439 -12.21177 -11.83818 -11.74287 -11.72919 -11.56391 -11.54553 -11.29818 -11.09048 -11.01204 -10.94863 -10.82890 -10.54347 -10.37831 -10.36729 -10.21404 -9.72191 -9.26229 -8.69697 -8.50343 -6.12092 -4.17524 0.79602 3.05120 3.25273 3.32501 3.35939 4.31373 4.39553 4.49386 4.54942 4.71800 4.83431 4.96815 5.07650 5.18561 5.23140 5.29699 5.37644 5.44885 5.47092 5.59933 5.67142 5.71810 5.75051 5.78569 5.86601 5.89403 5.96345 5.97047 6.05453 6.16318 6.38298 6.40963 6.51692 6.77936 7.31147 7.37170 7.81220 8.18412 8.86183 9.47251 10.99048 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.023797 B = 0.005168 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.326617 B = 5416.696664 C = 5796.100191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.104 4.104 3 H 0.077 0.923 4 C -0.111 4.111 5 C -0.137 4.137 6 C 0.122 3.878 7 N -1.002 6.002 8 S 2.589 3.411 9 O -0.965 6.965 10 O -0.965 6.965 11 C -0.589 4.589 12 C 0.028 3.972 13 C -0.519 4.519 14 H 0.061 0.939 15 C 0.057 3.943 16 N -0.891 5.891 17 Si 0.899 3.101 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.152 3.848 22 H 0.097 0.903 23 C -0.161 4.161 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.033 0.967 36 H 0.033 0.967 37 H 0.264 0.736 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.248 -9.642 -12.317 19.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.125 4.125 3 H 0.095 0.905 4 C -0.148 4.148 5 C -0.176 4.176 6 C -0.004 4.004 7 N -0.837 5.837 8 S 2.689 3.311 9 O -0.955 6.955 10 O -0.956 6.956 11 C -0.722 4.722 12 C -0.011 4.011 13 C -0.558 4.558 14 H 0.080 0.920 15 C -0.145 4.145 16 N -0.529 5.529 17 Si 0.727 3.273 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.208 1.208 21 C 0.046 3.954 22 H 0.115 0.885 23 C -0.220 4.220 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.851 -10.182 -11.411 19.347 hybrid contribution 0.183 1.562 -0.626 1.693 sum -11.667 -8.620 -12.037 18.850 Atomic orbital electron populations 1.21890 0.94700 1.02089 1.01950 1.21535 0.95725 1.00095 0.95099 0.90472 1.21545 0.95327 1.00756 0.97199 1.21953 0.96168 1.01692 0.97823 1.21329 0.98172 0.97093 0.83780 1.58066 1.15364 1.75838 1.34457 1.05709 0.73440 0.78485 0.73500 1.93527 1.67433 1.87258 1.47279 1.93528 1.48053 1.68100 1.85906 1.30499 1.10288 1.20446 1.11013 1.18964 0.93620 0.97391 0.91164 1.21042 1.31856 0.94694 1.08222 0.92030 1.25071 0.95563 0.98946 0.94915 1.69965 1.33809 1.36672 1.12438 0.86423 0.78126 0.84336 0.78451 1.19665 1.20782 1.20788 1.20921 0.78885 0.97119 0.98480 0.88455 1.22177 1.00734 0.96714 1.02383 0.92159 0.92309 0.92608 0.91669 0.92039 0.91011 0.91230 0.91515 0.89177 0.86372 0.86389 0.94915 0.94921 0.92588 0.92118 0.92194 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.71 37.16 0.32 -0.89 16 2 C -0.10 -1.04 2.65 -90.50 -0.24 -1.28 16 3 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.11 -0.97 4.96 -26.69 -0.13 -1.10 16 5 C -0.14 -1.31 6.08 -26.61 -0.16 -1.47 16 6 C 0.12 1.43 5.90 -3.71 -0.02 1.41 16 7 N -1.00 -13.99 2.93 -106.47 -0.31 -14.30 16 8 S 2.59 48.01 5.41 -107.50 -0.58 47.43 16 9 O -0.96 -20.37 16.72 -57.54 -0.96 -21.33 16 10 O -0.97 -20.42 16.72 -57.54 -0.96 -21.38 16 11 C -0.59 -11.51 6.12 37.16 0.23 -11.29 16 12 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 13 C -0.52 -14.45 9.11 -34.44 -0.31 -14.77 16 14 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -26.67 13.29 55.43 0.74 -25.94 16 17 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 C 0.15 1.85 2.68 -67.60 -0.18 1.67 16 22 H 0.10 1.28 7.10 -51.92 -0.37 0.92 16 23 C -0.16 -1.70 8.53 37.16 0.32 -1.38 16 24 H 0.06 0.44 6.35 -51.93 -0.33 0.11 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.53 6.51 -51.93 -0.34 0.20 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.70 7.48 -51.93 -0.39 0.31 16 32 H 0.09 1.12 7.10 -51.93 -0.37 0.75 16 33 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 34 H 0.12 2.09 8.14 -51.92 -0.42 1.66 16 35 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.06 0.57 5.72 -51.93 -0.30 0.27 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.59 6.36 -51.93 -0.33 0.26 16 LS Contribution 323.33 15.07 4.87 4.87 Total: -1.00 -33.76 323.33 -9.26 -43.03 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -6.61 Total: -1.65 kcal Atomic # 6 Polarization: -26.58 SS G_CDS: -0.42 Total: -27.00 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 0.42 Total: -40.24 kcal Atomic # 8 Polarization: -40.79 SS G_CDS: -1.92 Total: -42.71 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 48.01 SS G_CDS: -0.58 Total: 47.43 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.76 -9.26 -43.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173290592.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.621 kcal (2) G-P(sol) polarization free energy of solvation -33.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds