Wall clock time and date at job start Mon Mar 30 2020 02:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08990 * 109.52745 * 2 1 4 4 C 1.53046 * 109.49842 * 239.91709 * 2 1 3 5 5 C 1.53031 * 109.53726 * 178.68561 * 4 2 1 6 6 C 1.53196 * 109.31477 * 61.36734 * 5 4 2 7 7 N 1.46927 * 108.77413 * 305.36304 * 6 5 4 8 8 S 1.65597 * 120.63280 * 233.60597 * 7 6 5 9 9 O 1.42093 * 104.27698 * 206.07232 * 8 7 6 10 10 O 1.42100 * 104.27770 * 333.93386 * 8 7 6 11 11 C 1.81400 * 104.44911 * 90.00117 * 8 7 6 12 12 C 1.52998 * 109.47179 * 180.02562 * 11 8 7 13 13 C 1.50703 * 109.46991 * 180.02562 * 12 11 8 14 14 H 1.07994 * 120.00417 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99495 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00397 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99570 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47440 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47138 * 120.00042 * 17 15 13 20 20 H 1.48504 * 109.47291 * 240.00133 * 17 15 13 21 21 C 1.46923 * 118.73554 * 53.60901 * 7 6 5 22 22 H 1.09009 * 109.58590 * 186.60449 * 21 7 6 23 23 C 1.53001 * 109.59076 * 66.17941 * 21 7 6 24 24 H 1.09003 * 109.47396 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47538 * 300.08299 * 1 2 3 26 26 H 1.09004 * 109.47024 * 60.08285 * 1 2 3 27 27 H 1.08995 * 109.46071 * 298.70848 * 4 2 1 28 28 H 1.09006 * 109.45657 * 58.67666 * 4 2 1 29 29 H 1.09004 * 109.49984 * 181.32240 * 5 4 2 30 30 H 1.09000 * 109.50061 * 301.41377 * 5 4 2 31 31 H 1.08993 * 109.58448 * 65.15176 * 6 5 4 32 32 H 1.08998 * 109.58752 * 185.57550 * 6 5 4 33 33 H 1.09000 * 109.47121 * 300.00019 * 11 8 7 34 34 H 1.09001 * 109.47431 * 59.99855 * 11 8 7 35 35 H 1.09000 * 109.46783 * 299.99826 * 12 11 8 36 36 H 1.08993 * 109.47307 * 59.99769 * 12 11 8 37 37 H 0.96995 * 119.99723 * 180.02562 * 16 15 13 38 38 H 1.09005 * 109.46802 * 300.70847 * 23 21 7 39 39 H 1.09000 * 109.46960 * 60.70432 * 23 21 7 40 40 H 1.08999 * 109.46930 * 180.71040 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0272 0.0000 4 6 2.0408 -0.7232 -1.2484 5 6 3.5708 -0.6951 -1.2660 6 6 4.1052 -1.4268 -0.0307 7 7 3.5045 -0.8292 1.1696 8 16 4.4586 -0.2848 2.4088 9 8 3.6256 -0.3720 3.5567 10 8 5.6451 -1.0597 2.3041 11 6 4.7924 1.4495 1.9948 12 6 5.6766 2.0712 3.0776 13 6 5.9534 3.5122 2.7339 14 1 5.5404 3.9415 1.8331 15 6 6.7339 4.2825 3.5696 16 7 7.2365 3.7600 4.6669 17 14 7.0776 6.0685 3.1432 18 1 6.4027 6.4112 1.8656 19 1 6.5621 6.9440 4.2262 20 1 8.5418 6.2700 2.9985 21 6 2.0413 -0.7239 1.2496 22 1 1.7637 -0.1580 2.1389 23 6 1.4291 -2.1245 1.3176 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5151 0.8892 26 1 -0.3633 0.5126 -0.8908 27 1 1.6967 -1.7573 -1.2353 28 1 1.6583 -0.2244 -2.1390 29 1 3.9334 -1.1897 -2.1671 30 1 3.9159 0.3387 -1.2540 31 1 3.8374 -2.4819 -0.0867 32 1 5.1895 -1.3248 0.0138 33 1 5.3044 1.5016 1.0339 34 1 3.8514 1.9964 1.9352 35 1 5.1649 2.0191 4.0386 36 1 6.6174 1.5243 3.1368 37 1 7.7853 4.3020 5.2549 38 1 1.7141 -2.6890 0.4297 39 1 1.7941 -2.6377 2.2072 40 1 0.3430 -2.0444 1.3641 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173290592.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:40 Heat of formation + Delta-G solvation = -119.702441 kcal Electronic energy + Delta-G solvation = -20673.741293 eV Core-core repulsion = 17613.687694 eV Total energy + Delta-G solvation = -3060.053599 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.22530 -38.25336 -37.03524 -35.92252 -34.49295 -33.32941 -33.13266 -29.36135 -27.61827 -27.16210 -24.40659 -23.60582 -22.92981 -20.46430 -19.46058 -18.97636 -18.36417 -17.29527 -17.05901 -16.55602 -16.32123 -15.83955 -15.21917 -15.01329 -14.82130 -14.47756 -14.43950 -13.86047 -13.74980 -13.63179 -13.23082 -13.17952 -12.96911 -12.90926 -12.81548 -12.77352 -12.51423 -12.32199 -12.29035 -12.14572 -11.90467 -11.70685 -11.60141 -11.35605 -11.12549 -10.94520 -10.67771 -9.83542 -8.28041 -6.42565 -0.72063 1.39499 1.40402 1.53767 1.73023 2.36521 2.83765 3.05215 3.14803 3.58279 3.91817 3.93452 4.00119 4.08622 4.16973 4.24722 4.35343 4.50273 4.61361 4.65722 4.68467 4.72206 4.92760 4.96716 5.00530 5.05796 5.16196 5.20602 5.22908 5.23726 5.25125 5.33417 5.42000 5.54896 5.65495 5.66580 5.77166 6.03782 6.71071 7.27876 8.84638 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.023797 B = 0.005168 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.326617 B = 5416.696664 C = 5796.100191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 H 0.068 0.932 4 C -0.108 4.108 5 C -0.134 4.134 6 C 0.111 3.889 7 N -0.991 5.991 8 S 2.609 3.391 9 O -0.995 6.995 10 O -0.995 6.995 11 C -0.586 4.586 12 C 0.021 3.979 13 C -0.538 4.538 14 H 0.075 0.925 15 C -0.004 4.004 16 N -0.935 5.935 17 Si 0.976 3.024 18 H -0.256 1.256 19 H -0.277 1.277 20 H -0.277 1.277 21 C 0.141 3.859 22 H 0.080 0.920 23 C -0.159 4.159 24 H 0.072 0.928 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.004 0.996 36 H 0.005 0.995 37 H 0.268 0.732 38 H 0.076 0.924 39 H 0.040 0.960 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.789 -9.331 -15.075 22.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 H 0.086 0.914 4 C -0.145 4.145 5 C -0.173 4.173 6 C -0.013 4.013 7 N -0.830 5.830 8 S 2.708 3.292 9 O -0.985 6.985 10 O -0.985 6.985 11 C -0.718 4.718 12 C -0.018 4.018 13 C -0.577 4.577 14 H 0.093 0.907 15 C -0.202 4.202 16 N -0.575 5.575 17 Si 0.799 3.201 18 H -0.179 1.179 19 H -0.203 1.203 20 H -0.202 1.202 21 C 0.036 3.964 22 H 0.099 0.901 23 C -0.218 4.218 24 H 0.090 0.910 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.113 0.887 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.157 0.843 34 H 0.155 0.845 35 H 0.023 0.977 36 H 0.023 0.977 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.059 0.941 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.393 -9.865 -14.176 21.855 hybrid contribution 0.618 1.379 0.213 1.526 sum -12.774 -8.486 -13.963 20.740 Atomic orbital electron populations 1.21883 0.93142 1.03017 1.02343 1.21538 0.96971 0.99380 0.94417 0.91380 1.21559 0.94496 1.01478 0.96969 1.21966 0.96890 1.01190 0.97290 1.21638 0.97757 0.98332 0.83576 1.57715 1.15894 1.75149 1.34196 1.04785 0.72958 0.77691 0.73770 1.93479 1.68007 1.87403 1.49637 1.93481 1.49956 1.68498 1.86597 1.30392 1.10089 1.21683 1.09644 1.18816 0.93352 0.97443 0.92150 1.21527 1.31831 0.95671 1.08691 0.90697 1.26138 0.95225 1.04230 0.94633 1.70111 1.34748 1.38807 1.13794 0.85242 0.78136 0.77907 0.78820 1.17926 1.20255 1.20246 1.21219 0.77419 0.98506 0.99305 0.90147 1.22188 1.01954 0.95395 1.02248 0.90957 0.92816 0.91394 0.90462 0.90416 0.88666 0.91909 0.89776 0.90208 0.84332 0.84503 0.97739 0.97681 0.92336 0.90479 0.94104 0.89208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 8.71 71.98 0.63 -1.33 16 2 C -0.10 -1.79 2.65 -10.71 -0.03 -1.81 16 3 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 4 C -0.11 -1.49 4.96 30.62 0.15 -1.34 16 5 C -0.13 -2.16 6.08 30.67 0.19 -1.97 16 6 C 0.11 2.42 5.90 86.36 0.51 2.93 16 7 N -0.99 -26.88 2.93 -490.77 -1.44 -28.32 16 8 S 2.61 99.14 5.41 -56.49 -0.31 98.83 16 9 O -0.99 -43.56 16.72 -127.65 -2.13 -45.70 16 10 O -1.00 -43.33 16.72 -127.65 -2.13 -45.47 16 11 C -0.59 -23.23 6.12 71.98 0.44 -22.79 16 12 C 0.02 1.14 4.98 29.85 0.15 1.29 16 13 C -0.54 -30.38 9.11 25.60 0.23 -30.15 16 14 H 0.07 3.91 7.74 -2.91 -0.02 3.89 16 15 C 0.00 -0.23 5.46 84.66 0.46 0.24 16 16 N -0.94 -57.64 13.29 21.45 0.28 -57.35 16 17 Si 0.98 43.65 29.54 68.60 2.03 45.67 16 18 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 19 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 20 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 21 C 0.14 3.24 2.68 44.98 0.12 3.36 16 22 H 0.08 2.11 7.10 -2.38 -0.02 2.10 16 23 C -0.16 -3.03 8.53 71.98 0.61 -2.41 16 24 H 0.07 0.80 6.35 -2.39 -0.02 0.78 16 25 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.08 0.91 6.51 -2.39 -0.02 0.90 16 28 H 0.08 0.88 8.14 -2.38 -0.02 0.87 16 29 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.56 7.48 -2.39 -0.02 1.54 16 32 H 0.08 1.91 7.10 -2.39 -0.02 1.89 16 33 H 0.14 4.84 8.14 -2.39 -0.02 4.82 16 34 H 0.14 4.82 8.14 -2.39 -0.02 4.80 16 35 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 38 H 0.08 1.20 5.72 -2.38 -0.01 1.19 16 39 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.09 1.31 6.36 -2.39 -0.02 1.29 16 Total: -1.00 -74.75 323.33 0.77 -73.99 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 1.00 Total: 12.33 kcal Atomic # 6 Polarization: -57.45 SS G_CDS: 3.46 Total: -53.99 kcal Atomic # 7 Polarization: -84.52 SS G_CDS: -1.15 Total: -85.67 kcal Atomic # 8 Polarization: -86.89 SS G_CDS: -4.27 Total: -91.16 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: 99.14 SS G_CDS: -0.31 Total: 98.83 kcal Total: -74.75 0.77 -73.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173290592.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.717 kcal (2) G-P(sol) polarization free energy of solvation -74.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds