Wall clock time and date at job start Mon Mar 30 2020 02:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 5 5 C 1.46499 * 120.00271 * 300.00476 * 4 2 1 6 6 S 1.65611 * 119.99775 * 120.00228 * 4 2 1 7 7 O 1.42103 * 104.27466 * 206.07114 * 6 4 2 8 8 O 1.42098 * 104.27333 * 333.93006 * 6 4 2 9 9 C 1.81401 * 104.44809 * 90.00175 * 6 4 2 10 10 C 1.53001 * 109.47114 * 180.02562 * 9 6 4 11 11 C 1.50695 * 109.47038 * 179.97438 * 10 9 6 12 12 H 1.07995 * 120.00539 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99600 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00397 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99732 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47664 * 89.99996 * 15 13 11 17 17 H 1.48503 * 109.46984 * 209.99927 * 15 13 11 18 18 H 1.48500 * 109.46963 * 329.99747 * 15 13 11 19 19 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 20 20 C 1.53000 * 115.55216 * 154.32880 * 19 2 1 21 21 C 1.52998 * 117.49791 * 8.61610 * 19 2 1 22 22 C 1.52995 * 60.00236 * 252.51771 * 21 19 2 23 23 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 25 25 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 26 26 H 1.08994 * 109.47057 * 89.99771 * 5 4 2 27 27 H 1.09006 * 109.46711 * 209.99932 * 5 4 2 28 28 H 1.08998 * 109.46853 * 329.99725 * 5 4 2 29 29 H 1.09006 * 109.46939 * 299.99680 * 9 6 4 30 30 H 1.09001 * 109.47075 * 59.99993 * 9 6 4 31 31 H 1.09001 * 109.46574 * 299.99985 * 10 9 6 32 32 H 1.09000 * 109.46678 * 59.99236 * 10 9 6 33 33 H 0.96996 * 120.00272 * 180.02562 * 14 13 11 34 34 H 1.08998 * 109.46860 * 59.99652 * 20 19 2 35 35 H 1.09000 * 109.46623 * 180.02562 * 20 19 2 36 36 H 1.09002 * 109.46746 * 299.99477 * 20 19 2 37 37 H 1.09005 * 117.50044 * 0.02562 * 21 19 2 38 38 H 1.08999 * 117.50208 * 145.01816 * 21 19 2 39 39 H 1.09008 * 117.49359 * 252.51162 * 22 21 19 40 40 H 1.08994 * 117.50629 * 107.49153 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 1.6643 -2.0932 -1.4280 6 16 2.9704 0.1141 -2.2863 7 8 2.7432 -0.5613 -3.5157 8 8 2.6122 1.4795 -2.1234 9 6 4.6649 -0.1731 -1.7059 10 6 5.6505 0.5294 -2.6419 11 6 7.0581 0.2913 -2.1594 12 1 7.2324 -0.3014 -1.2736 13 6 8.1236 0.8302 -2.8489 14 7 7.9114 1.5524 -3.9273 15 14 9.8685 0.5344 -2.2513 16 1 10.4052 -0.6988 -2.8808 17 1 10.7219 1.6916 -2.6231 18 1 9.8658 0.3756 -0.7748 19 6 2.0400 -0.7213 1.2492 20 6 3.4330 -1.3429 1.1299 21 6 1.0105 -1.4541 2.1117 22 6 1.6357 -0.1495 2.6096 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 0.7374 -2.1443 -1.9993 27 1 2.4628 -2.5819 -1.9864 28 1 1.5294 -2.5969 -0.4708 29 1 4.7758 0.2248 -0.6972 30 1 4.8700 -1.2437 -1.6989 31 1 5.5396 0.1319 -3.6508 32 1 5.4451 1.5998 -2.6485 33 1 8.6610 1.9311 -4.4126 34 1 4.1610 -0.5629 0.9071 35 1 3.6959 -1.8282 2.0698 36 1 3.4340 -2.0808 0.3276 37 1 -0.0302 -1.4226 1.7889 38 1 1.3252 -2.3794 2.5941 39 1 2.3620 -0.2165 3.4197 40 1 1.0065 0.7405 2.6146 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176787969.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:36 Heat of formation + Delta-G solvation = -55.290060 kcal Electronic energy + Delta-G solvation = -20668.287069 eV Core-core repulsion = 17611.026600 eV Total energy + Delta-G solvation = -3057.260469 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.38321 -36.61427 -35.51494 -35.13854 -33.88809 -31.20997 -30.39733 -28.58417 -26.37199 -25.55297 -23.22551 -22.48573 -21.50375 -19.14733 -18.15201 -17.56248 -16.52816 -16.29260 -15.62286 -15.36645 -14.63919 -14.56278 -14.24388 -13.77458 -13.42160 -13.35420 -12.74613 -12.60540 -12.46316 -12.35356 -12.07753 -11.76728 -11.68943 -11.57402 -11.46322 -11.39391 -11.23211 -11.07279 -10.95874 -10.91102 -10.46904 -10.36450 -10.24773 -9.74894 -9.68914 -9.29666 -8.72864 -8.49552 -6.11582 -4.17033 0.78857 3.03204 3.26257 3.32565 3.35159 3.65550 4.30704 4.39557 4.52109 4.56591 4.70240 4.78135 4.85633 5.10657 5.20934 5.23606 5.27433 5.48532 5.55026 5.58481 5.64009 5.70978 5.73242 5.75461 5.81341 5.84615 5.91820 6.00175 6.01485 6.15979 6.23416 6.27993 6.55225 6.76344 7.31442 7.37535 7.81442 8.18714 8.86390 9.47649 10.99505 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.023179 B = 0.005396 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.709507 B = 5187.490169 C = 5868.516187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.182 3.818 3 H 0.105 0.895 4 N -1.000 6.000 5 C 0.097 3.903 6 S 2.587 3.413 7 O -0.964 6.964 8 O -0.965 6.965 9 C -0.591 4.591 10 C 0.029 3.971 11 C -0.519 4.519 12 H 0.061 0.939 13 C 0.058 3.942 14 N -0.891 5.891 15 Si 0.899 3.101 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.273 1.273 19 C -0.137 4.137 20 C -0.123 4.123 21 C -0.179 4.179 22 C -0.171 4.171 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.032 0.968 32 H 0.032 0.968 33 H 0.265 0.735 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.881 -6.779 11.794 19.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.075 3.925 3 H 0.122 0.878 4 N -0.835 5.835 5 C -0.049 4.049 6 S 2.686 3.314 7 O -0.954 6.954 8 O -0.956 6.956 9 C -0.724 4.724 10 C -0.010 4.010 11 C -0.558 4.558 12 H 0.079 0.921 13 C -0.145 4.145 14 N -0.529 5.529 15 Si 0.726 3.274 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.139 4.139 20 C -0.179 4.179 21 C -0.216 4.216 22 C -0.208 4.208 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.118 0.882 38 H 0.108 0.892 39 H 0.113 0.887 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.171 -6.208 10.882 18.915 hybrid contribution 1.421 -0.480 0.788 1.694 sum -12.750 -6.688 11.670 18.533 Atomic orbital electron populations 1.22194 0.94970 1.02309 1.02278 1.20283 0.94386 0.95836 0.81957 0.87756 1.57699 1.66494 1.21862 1.37494 1.21362 1.01056 0.80957 1.01512 1.05797 0.77608 0.73904 0.74053 1.93537 1.84993 1.75235 1.41671 1.93525 1.82438 1.33617 1.85973 1.30582 1.19627 1.10458 1.11746 1.18955 0.93341 0.95574 0.93169 1.20994 0.89832 1.33201 1.11771 0.92057 1.25063 0.99587 0.94908 0.94900 1.69953 1.31787 1.33739 1.17409 0.86483 0.83920 0.77879 0.79073 1.20484 1.21018 1.19779 1.21930 0.96637 1.03470 0.91816 1.21486 0.93537 1.00933 1.01994 1.23219 0.98664 0.96005 1.03704 1.23035 1.03631 0.97479 0.96679 0.91828 0.91687 0.91952 0.92921 0.91211 0.91033 0.86116 0.86298 0.94958 0.94929 0.92545 0.91442 0.92565 0.91489 0.88204 0.89155 0.88730 0.88669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 7.79 37.16 0.29 -1.32 16 2 C 0.18 2.21 2.84 -67.93 -0.19 2.01 16 3 H 0.10 1.41 6.87 -51.93 -0.36 1.06 16 4 N -1.00 -13.69 2.26 -114.61 -0.26 -13.95 16 5 C 0.10 1.09 8.09 59.85 0.48 1.58 16 6 S 2.59 47.62 5.37 -107.50 -0.58 47.04 16 7 O -0.96 -20.36 17.09 -57.54 -0.98 -21.35 16 8 O -0.97 -20.25 16.57 -57.54 -0.95 -21.21 16 9 C -0.59 -11.36 5.68 37.16 0.21 -11.14 16 10 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 11 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 12 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 15 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 18 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 19 C -0.14 -1.42 1.65 -154.51 -0.26 -1.67 16 20 C -0.12 -1.34 8.77 37.16 0.33 -1.02 16 21 C -0.18 -1.50 9.20 -26.73 -0.25 -1.75 16 22 C -0.17 -1.52 9.61 -26.73 -0.26 -1.78 16 23 H 0.06 0.57 6.50 -51.93 -0.34 0.23 16 24 H 0.06 0.55 7.07 -51.93 -0.37 0.19 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.79 7.79 -51.93 -0.40 0.38 16 28 H 0.07 0.65 6.71 -51.93 -0.35 0.30 16 29 H 0.12 2.10 6.32 -51.92 -0.33 1.78 16 30 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 31 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.07 0.82 6.18 -51.93 -0.32 0.50 16 35 H 0.06 0.55 8.11 -51.93 -0.42 0.13 16 36 H 0.07 0.71 6.14 -51.93 -0.32 0.39 16 37 H 0.10 0.77 5.85 -51.93 -0.30 0.46 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 0.80 8.14 -51.92 -0.42 0.38 16 40 H 0.09 0.79 7.61 -51.93 -0.40 0.40 16 LS Contribution 326.82 15.07 4.93 4.93 Total: -1.00 -33.52 326.82 -8.73 -42.25 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -6.40 Total: -0.49 kcal Atomic # 6 Polarization: -27.38 SS G_CDS: -0.19 Total: -27.57 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.48 Total: -39.77 kcal Atomic # 8 Polarization: -40.61 SS G_CDS: -1.94 Total: -42.55 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 47.62 SS G_CDS: -0.58 Total: 47.04 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.52 -8.73 -42.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176787969.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.044 kcal (2) G-P(sol) polarization free energy of solvation -33.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds