Wall clock time and date at job start Mon Mar 30 2020 02:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 5 5 C 1.46499 * 120.00271 * 300.00476 * 4 2 1 6 6 S 1.65611 * 119.99775 * 120.00228 * 4 2 1 7 7 O 1.42103 * 104.27466 * 206.07114 * 6 4 2 8 8 O 1.42098 * 104.27333 * 333.93006 * 6 4 2 9 9 C 1.81401 * 104.44809 * 90.00175 * 6 4 2 10 10 C 1.53001 * 109.47114 * 180.02562 * 9 6 4 11 11 C 1.50695 * 109.47038 * 179.97438 * 10 9 6 12 12 H 1.07995 * 120.00539 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99600 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00397 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99732 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47664 * 89.99996 * 15 13 11 17 17 H 1.48503 * 109.46984 * 209.99927 * 15 13 11 18 18 H 1.48500 * 109.46963 * 329.99747 * 15 13 11 19 19 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 20 20 C 1.53000 * 115.55216 * 154.32880 * 19 2 1 21 21 C 1.52998 * 117.49791 * 8.61610 * 19 2 1 22 22 C 1.52995 * 60.00236 * 252.51771 * 21 19 2 23 23 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 25 25 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 26 26 H 1.08994 * 109.47057 * 89.99771 * 5 4 2 27 27 H 1.09006 * 109.46711 * 209.99932 * 5 4 2 28 28 H 1.08998 * 109.46853 * 329.99725 * 5 4 2 29 29 H 1.09006 * 109.46939 * 299.99680 * 9 6 4 30 30 H 1.09001 * 109.47075 * 59.99993 * 9 6 4 31 31 H 1.09001 * 109.46574 * 299.99985 * 10 9 6 32 32 H 1.09000 * 109.46678 * 59.99236 * 10 9 6 33 33 H 0.96996 * 120.00272 * 180.02562 * 14 13 11 34 34 H 1.08998 * 109.46860 * 59.99652 * 20 19 2 35 35 H 1.09000 * 109.46623 * 180.02562 * 20 19 2 36 36 H 1.09002 * 109.46746 * 299.99477 * 20 19 2 37 37 H 1.09005 * 117.50044 * 0.02562 * 21 19 2 38 38 H 1.08999 * 117.50208 * 145.01816 * 21 19 2 39 39 H 1.09008 * 117.49359 * 252.51162 * 22 21 19 40 40 H 1.08994 * 117.50629 * 107.49153 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 1.6643 -2.0932 -1.4280 6 16 2.9704 0.1141 -2.2863 7 8 2.7432 -0.5613 -3.5157 8 8 2.6122 1.4795 -2.1234 9 6 4.6649 -0.1731 -1.7059 10 6 5.6505 0.5294 -2.6419 11 6 7.0581 0.2913 -2.1594 12 1 7.2324 -0.3014 -1.2736 13 6 8.1236 0.8302 -2.8489 14 7 7.9114 1.5524 -3.9273 15 14 9.8685 0.5344 -2.2513 16 1 10.4052 -0.6988 -2.8808 17 1 10.7219 1.6916 -2.6231 18 1 9.8658 0.3756 -0.7748 19 6 2.0400 -0.7213 1.2492 20 6 3.4330 -1.3429 1.1299 21 6 1.0105 -1.4541 2.1117 22 6 1.6357 -0.1495 2.6096 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 0.7374 -2.1443 -1.9993 27 1 2.4628 -2.5819 -1.9864 28 1 1.5294 -2.5969 -0.4708 29 1 4.7758 0.2248 -0.6972 30 1 4.8700 -1.2437 -1.6989 31 1 5.5396 0.1319 -3.6508 32 1 5.4451 1.5998 -2.6485 33 1 8.6610 1.9311 -4.4126 34 1 4.1610 -0.5629 0.9071 35 1 3.6959 -1.8282 2.0698 36 1 3.4340 -2.0808 0.3276 37 1 -0.0302 -1.4226 1.7889 38 1 1.3252 -2.3794 2.5941 39 1 2.3620 -0.2165 3.4197 40 1 1.0065 0.7405 2.6146 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176787969.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:36 Heat of formation + Delta-G solvation = -77.754285 kcal Electronic energy + Delta-G solvation = -20669.261190 eV Core-core repulsion = 17611.026600 eV Total energy + Delta-G solvation = -3058.234591 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.21715 -38.21841 -37.05102 -36.18869 -35.89363 -33.16758 -31.30123 -29.41522 -27.59879 -27.28610 -24.23930 -23.39999 -23.10573 -20.30934 -19.31141 -19.07411 -18.34354 -17.31975 -17.11886 -16.67654 -16.53705 -15.75453 -15.23929 -15.04825 -14.59101 -14.47790 -14.41097 -13.82350 -13.58800 -13.47938 -13.36706 -13.20894 -13.01821 -12.94063 -12.90564 -12.69630 -12.46927 -12.35461 -12.23038 -12.14252 -12.11307 -11.81640 -11.70817 -11.27277 -10.93459 -10.65301 -10.46367 -9.88475 -8.26198 -6.40370 -0.71089 1.40319 1.42292 1.53363 1.73458 2.37703 2.83953 2.92821 3.07132 3.17438 3.62500 3.81051 3.98703 4.03985 4.07485 4.14187 4.23169 4.38593 4.47961 4.69143 4.73203 4.79279 4.88867 4.92459 4.93371 5.00013 5.06646 5.08497 5.18555 5.25389 5.26987 5.33024 5.37754 5.39995 5.46268 5.68121 5.74715 6.05824 6.73115 7.29858 8.86231 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.023179 B = 0.005396 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.709507 B = 5187.490169 C = 5868.516187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.174 3.826 3 H 0.083 0.917 4 N -0.987 5.987 5 C 0.087 3.913 6 S 2.607 3.393 7 O -0.994 6.994 8 O -0.996 6.996 9 C -0.587 4.587 10 C 0.022 3.978 11 C -0.537 4.537 12 H 0.076 0.924 13 C -0.004 4.004 14 N -0.935 5.935 15 Si 0.974 3.026 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.258 1.258 19 C -0.153 4.153 20 C -0.127 4.127 21 C -0.159 4.159 22 C -0.170 4.170 23 H 0.081 0.919 24 H 0.084 0.916 25 H 0.046 0.954 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.102 0.898 29 H 0.138 0.862 30 H 0.141 0.859 31 H 0.004 0.996 32 H 0.003 0.997 33 H 0.267 0.733 34 H 0.048 0.952 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.414 -8.600 14.311 22.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.068 3.932 3 H 0.101 0.899 4 N -0.825 5.825 5 C -0.057 4.057 6 S 2.705 3.295 7 O -0.984 6.984 8 O -0.986 6.986 9 C -0.719 4.719 10 C -0.016 4.016 11 C -0.575 4.575 12 H 0.094 0.906 13 C -0.202 4.202 14 N -0.575 5.575 15 Si 0.797 3.203 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.181 1.181 19 C -0.154 4.154 20 C -0.184 4.184 21 C -0.196 4.196 22 C -0.208 4.208 23 H 0.100 0.900 24 H 0.103 0.897 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.120 0.880 29 H 0.156 0.844 30 H 0.159 0.841 31 H 0.023 0.977 32 H 0.022 0.978 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.130 0.870 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -14.702 -8.036 13.406 21.458 hybrid contribution 1.492 0.077 0.045 1.495 sum -13.209 -7.959 13.451 20.464 Atomic orbital electron populations 1.22204 0.93164 1.03584 1.02549 1.20482 0.95785 0.94980 0.81907 0.89876 1.57300 1.65012 1.22886 1.37341 1.21657 1.01364 0.79295 1.03409 1.04896 0.77348 0.73246 0.74013 1.93489 1.85314 1.75676 1.43955 1.93477 1.82751 1.35877 1.86527 1.30467 1.19232 1.11131 1.11022 1.18803 0.95002 0.94431 0.93400 1.21492 0.90824 1.33059 1.12166 0.90602 1.26118 1.04666 0.94479 0.94920 1.70104 1.33317 1.35082 1.18989 0.85312 0.77802 0.77883 0.79258 1.19534 1.20857 1.18135 1.21786 0.97039 1.05071 0.91536 1.21513 0.93562 1.00500 1.02804 1.23298 0.98543 0.96025 1.01739 1.23133 1.03777 0.98280 0.95583 0.89988 0.89698 0.93475 0.92159 0.91274 0.87985 0.84353 0.84092 0.97719 0.97823 0.92397 0.93328 0.91214 0.91329 0.87016 0.88061 0.88286 0.88161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 7.79 71.98 0.56 -2.25 16 2 C 0.17 3.97 2.84 44.99 0.13 4.10 16 3 H 0.08 2.24 6.87 -2.39 -0.02 2.23 16 4 N -0.99 -25.95 2.26 -516.52 -1.17 -27.11 16 5 C 0.09 1.77 8.09 127.77 1.03 2.81 16 6 S 2.61 97.80 5.37 -56.49 -0.30 97.50 16 7 O -0.99 -42.92 17.09 -127.65 -2.18 -45.10 16 8 O -1.00 -43.30 16.57 -127.65 -2.12 -45.41 16 9 C -0.59 -22.83 5.68 71.98 0.41 -22.42 16 10 C 0.02 1.20 4.98 29.85 0.15 1.35 16 11 C -0.54 -29.95 9.11 25.60 0.23 -29.72 16 12 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 13 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 14 N -0.94 -57.45 13.29 21.45 0.28 -57.17 16 15 Si 0.97 43.45 29.54 68.60 2.03 45.48 16 16 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 17 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 18 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 19 C -0.15 -2.76 1.65 -52.18 -0.09 -2.85 16 20 C -0.13 -2.50 8.77 71.98 0.63 -1.87 16 21 C -0.16 -2.04 9.20 30.59 0.28 -1.75 16 22 C -0.17 -2.54 9.61 30.59 0.29 -2.24 16 23 H 0.08 1.17 6.50 -2.39 -0.02 1.15 16 24 H 0.08 1.19 7.07 -2.39 -0.02 1.18 16 25 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.07 1.44 7.79 -2.38 -0.02 1.42 16 28 H 0.10 1.47 6.71 -2.39 -0.02 1.46 16 29 H 0.14 4.84 6.32 -2.39 -0.02 4.82 16 30 H 0.14 4.77 8.14 -2.39 -0.02 4.75 16 31 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 33 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 34 H 0.05 1.12 6.18 -2.39 -0.01 1.11 16 35 H 0.07 1.16 8.11 -2.39 -0.02 1.15 16 36 H 0.07 1.29 6.14 -2.39 -0.01 1.28 16 37 H 0.11 1.19 5.85 -2.38 -0.01 1.18 16 38 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.10 1.39 7.61 -2.39 -0.02 1.37 16 Total: -1.00 -74.20 326.82 1.65 -72.55 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 1.01 Total: 13.86 kcal Atomic # 6 Polarization: -58.69 SS G_CDS: 4.10 Total: -54.60 kcal Atomic # 7 Polarization: -83.40 SS G_CDS: -0.88 Total: -84.28 kcal Atomic # 8 Polarization: -86.22 SS G_CDS: -4.30 Total: -90.51 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: 97.80 SS G_CDS: -0.30 Total: 97.50 kcal Total: -74.20 1.65 -72.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176787969.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.207 kcal (2) G-P(sol) polarization free energy of solvation -74.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds