Wall clock time and date at job start Mon Mar 30 2020 02:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47047 * 2 1 4 4 N 1.46503 * 109.47101 * 119.99480 * 2 1 3 5 5 C 1.46497 * 119.99735 * 53.13102 * 4 2 1 6 6 S 1.65596 * 119.99994 * 233.13888 * 4 2 1 7 7 O 1.42101 * 104.27573 * 206.06576 * 6 4 2 8 8 O 1.42094 * 104.27930 * 333.92419 * 6 4 2 9 9 C 1.81402 * 104.45019 * 90.00024 * 6 4 2 10 10 C 1.52999 * 109.47135 * 179.97438 * 9 6 4 11 11 C 1.50697 * 109.47176 * 179.97438 * 10 9 6 12 12 H 1.07996 * 120.00267 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99995 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99876 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99978 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47285 * 60.00105 * 15 13 11 17 17 H 1.48504 * 109.47239 * 179.97438 * 15 13 11 18 18 H 1.48508 * 109.47080 * 299.99873 * 15 13 11 19 19 C 1.53002 * 109.47342 * 239.99681 * 2 1 3 20 20 C 1.53000 * 115.54609 * 295.91448 * 19 2 1 21 21 C 1.53002 * 117.49856 * 150.25154 * 19 2 1 22 22 C 1.52995 * 117.49995 * 81.59003 * 19 2 1 23 23 H 1.09006 * 109.46439 * 60.00502 * 1 2 3 24 24 H 1.09001 * 109.47047 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47168 * 300.00950 * 1 2 3 26 26 H 1.09007 * 109.46900 * 94.65746 * 5 4 2 27 27 H 1.08997 * 109.47550 * 214.65587 * 5 4 2 28 28 H 1.09000 * 109.47516 * 334.65949 * 5 4 2 29 29 H 1.09004 * 109.46581 * 299.99344 * 9 6 4 30 30 H 1.08988 * 109.47457 * 59.99780 * 9 6 4 31 31 H 1.08999 * 109.47259 * 299.99794 * 10 9 6 32 32 H 1.09003 * 109.47173 * 59.99612 * 10 9 6 33 33 H 0.97006 * 119.99642 * 180.02562 * 14 13 11 34 34 H 1.09001 * 109.46946 * 39.55677 * 20 19 2 35 35 H 1.09008 * 109.46641 * 159.55086 * 20 19 2 36 36 H 1.08991 * 109.47601 * 279.54929 * 20 19 2 37 37 H 1.08999 * 117.49433 * 359.97438 * 21 19 2 38 38 H 1.08993 * 117.49724 * 145.02121 * 21 19 2 39 39 H 1.09004 * 117.49521 * 214.98253 * 22 19 2 40 40 H 1.08997 * 117.49657 * 359.97438 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 1.5448 -2.0416 1.5066 6 16 3.1054 0.0563 2.1976 7 8 3.7992 -1.0147 2.8227 8 8 3.7848 0.9759 1.3538 9 6 2.0775 0.9389 3.4039 10 6 2.9770 1.6775 4.3969 11 6 2.1231 2.4112 5.3987 12 1 1.0465 2.3566 5.3333 13 6 2.7163 3.1523 6.3987 14 7 4.0273 3.2184 6.4786 15 14 1.6578 4.0623 7.6400 16 1 0.8058 3.0903 8.3711 17 1 2.5308 4.7781 8.6047 18 1 0.7951 5.0417 6.9313 19 6 2.0401 -0.7213 -1.2492 20 6 1.6913 -2.2082 -1.3412 21 6 3.3865 -0.2748 -1.8226 22 6 2.0885 0.0751 -2.5546 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8898 26 1 2.2477 -2.7734 1.1083 27 1 1.4697 -2.1610 2.5875 28 1 0.5648 -2.1959 1.0551 29 1 1.4431 1.6570 2.8841 30 1 1.4535 0.2248 3.9410 31 1 3.6112 0.9592 4.9166 32 1 3.6014 2.3916 3.8600 33 1 4.4446 3.7395 7.1824 34 1 0.6743 -2.3657 -0.9818 35 1 1.7647 -2.5350 -2.3785 36 1 2.3861 -2.7830 -0.7291 37 1 3.9086 0.5332 -1.3100 38 1 4.0235 -1.0402 -2.2657 39 1 1.8721 -0.4603 -3.4791 40 1 1.7565 1.1129 -2.5236 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176787985.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:39 Heat of formation + Delta-G solvation = -57.367881 kcal Electronic energy + Delta-G solvation = -20496.041117 eV Core-core repulsion = 17438.690547 eV Total energy + Delta-G solvation = -3057.350570 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.16375 -36.59132 -35.46482 -35.27234 -33.87927 -31.14766 -30.41218 -28.79332 -26.35007 -25.58957 -23.02417 -22.28145 -21.47013 -19.27491 -18.29213 -17.57187 -16.53445 -16.01685 -15.65462 -15.10446 -14.68995 -14.50289 -14.45192 -14.21420 -13.38702 -13.00638 -12.85704 -12.49194 -12.32079 -12.30217 -12.11460 -11.91592 -11.74508 -11.55113 -11.49630 -11.41985 -11.20890 -11.06280 -10.95835 -10.73543 -10.41616 -10.36804 -10.27919 -9.76116 -9.67540 -9.30471 -8.69631 -8.49727 -6.11891 -4.17602 0.79084 3.03558 3.27280 3.32084 3.33903 3.76095 4.32356 4.41642 4.50397 4.62708 4.73390 4.87216 4.93845 5.00977 5.20344 5.23114 5.32373 5.52236 5.56186 5.57979 5.61941 5.68863 5.69708 5.73756 5.80172 5.86570 5.96047 5.98394 6.07561 6.15987 6.24396 6.37341 6.50596 6.76814 7.30455 7.36745 7.80787 8.18212 8.85531 9.47048 10.99128 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.031419 B = 0.004585 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.971385 B = 6105.190617 C = 6208.243413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.183 3.817 3 H 0.098 0.902 4 N -1.000 6.000 5 C 0.092 3.908 6 S 2.589 3.411 7 O -0.964 6.964 8 O -0.963 6.963 9 C -0.591 4.591 10 C 0.029 3.971 11 C -0.521 4.521 12 H 0.061 0.939 13 C 0.058 3.942 14 N -0.891 5.891 15 Si 0.900 3.100 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.275 1.275 19 C -0.136 4.136 20 C -0.115 4.115 21 C -0.174 4.174 22 C -0.170 4.170 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.032 0.968 32 H 0.033 0.967 33 H 0.266 0.734 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.063 0.937 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.834 -9.189 -15.671 19.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.077 3.923 3 H 0.116 0.884 4 N -0.836 5.836 5 C -0.053 4.053 6 S 2.688 3.312 7 O -0.954 6.954 8 O -0.953 6.953 9 C -0.724 4.724 10 C -0.010 4.010 11 C -0.560 4.560 12 H 0.079 0.921 13 C -0.144 4.144 14 N -0.529 5.529 15 Si 0.727 3.273 16 H -0.201 1.201 17 H -0.210 1.210 18 H -0.201 1.201 19 C -0.138 4.138 20 C -0.172 4.172 21 C -0.211 4.211 22 C -0.208 4.208 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.125 0.875 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.733 -9.218 -15.666 19.384 hybrid contribution -1.138 0.654 0.924 1.605 sum -7.870 -8.564 -14.742 18.778 Atomic orbital electron populations 1.22152 0.94744 1.02597 1.02508 1.20313 0.94088 0.95522 0.82369 0.88360 1.57711 1.64402 1.25210 1.36260 1.21547 0.99998 0.82856 1.00889 1.05739 0.75483 0.74746 0.75205 1.93533 1.70597 1.53662 1.77647 1.93517 1.71138 1.65500 1.65182 1.30506 1.14536 1.12517 1.14851 1.18950 0.93990 0.95402 0.92699 1.20966 0.92899 1.30279 1.11878 0.92127 1.25067 0.95108 0.96469 0.97800 1.69949 1.08785 1.40672 1.33464 0.86530 0.80076 0.79833 0.80826 1.20082 1.21050 1.20076 1.21763 1.01874 0.95999 0.94177 1.21482 1.01610 0.92841 1.01257 1.23159 0.90561 1.03954 1.03437 1.23049 1.02270 1.00723 0.94788 0.91475 0.91819 0.91770 0.92540 0.91572 0.90918 0.86386 0.86370 0.94934 0.94909 0.92470 0.91952 0.92979 0.91766 0.87496 0.89114 0.88972 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 8.88 37.16 0.33 -1.20 16 2 C 0.18 2.23 2.49 -67.93 -0.17 2.06 16 3 H 0.10 1.31 6.98 -51.93 -0.36 0.94 16 4 N -1.00 -13.76 3.00 -114.61 -0.34 -14.10 16 5 C 0.09 1.05 8.19 59.85 0.49 1.54 16 6 S 2.59 47.65 5.36 -107.50 -0.58 47.08 16 7 O -0.96 -20.46 17.18 -57.54 -0.99 -21.45 16 8 O -0.96 -19.84 16.59 -57.54 -0.95 -20.79 16 9 C -0.59 -11.50 6.12 37.16 0.23 -11.28 16 10 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 11 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 12 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -26.63 13.29 55.43 0.74 -25.90 16 15 Si 0.90 21.25 29.54 -169.99 -5.02 16.22 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 C -0.14 -1.51 1.81 -154.51 -0.28 -1.79 16 20 C -0.12 -1.08 8.15 37.16 0.30 -0.77 16 21 C -0.17 -2.10 9.95 -26.69 -0.27 -2.37 16 22 C -0.17 -1.67 9.90 -26.69 -0.26 -1.94 16 23 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.53 5.13 -51.93 -0.27 0.26 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.63 6.51 -51.92 -0.34 0.29 16 27 H 0.07 0.74 7.96 -51.93 -0.41 0.33 16 28 H 0.07 0.62 5.15 -51.93 -0.27 0.35 16 29 H 0.12 2.07 8.14 -51.92 -0.42 1.64 16 30 H 0.12 2.08 8.14 -51.93 -0.42 1.65 16 31 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.06 0.51 5.63 -51.93 -0.29 0.21 16 35 H 0.05 0.43 7.94 -51.92 -0.41 0.02 16 36 H 0.06 0.64 6.32 -51.93 -0.33 0.31 16 37 H 0.11 1.52 8.07 -51.93 -0.42 1.10 16 38 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.09 0.77 8.08 -51.93 -0.42 0.35 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 330.29 15.07 4.98 4.98 Total: -1.00 -33.65 330.29 -8.79 -42.44 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -6.44 Total: -0.07 kcal Atomic # 6 Polarization: -28.23 SS G_CDS: -0.18 Total: -28.41 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.39 Total: -40.00 kcal Atomic # 8 Polarization: -40.30 SS G_CDS: -1.94 Total: -42.24 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 47.65 SS G_CDS: -0.58 Total: 47.08 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.65 -8.79 -42.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176787985.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.925 kcal (2) G-P(sol) polarization free energy of solvation -33.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds