Wall clock time and date at job start Mon Mar 30 2020 02:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47047 * 2 1 4 4 N 1.46503 * 109.47101 * 119.99480 * 2 1 3 5 5 C 1.46497 * 119.99735 * 53.13102 * 4 2 1 6 6 S 1.65596 * 119.99994 * 233.13888 * 4 2 1 7 7 O 1.42101 * 104.27573 * 206.06576 * 6 4 2 8 8 O 1.42094 * 104.27930 * 333.92419 * 6 4 2 9 9 C 1.81402 * 104.45019 * 90.00024 * 6 4 2 10 10 C 1.52999 * 109.47135 * 179.97438 * 9 6 4 11 11 C 1.50697 * 109.47176 * 179.97438 * 10 9 6 12 12 H 1.07996 * 120.00267 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99995 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99876 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99978 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47285 * 60.00105 * 15 13 11 17 17 H 1.48504 * 109.47239 * 179.97438 * 15 13 11 18 18 H 1.48508 * 109.47080 * 299.99873 * 15 13 11 19 19 C 1.53002 * 109.47342 * 239.99681 * 2 1 3 20 20 C 1.53000 * 115.54609 * 295.91448 * 19 2 1 21 21 C 1.53002 * 117.49856 * 150.25154 * 19 2 1 22 22 C 1.52995 * 117.49995 * 81.59003 * 19 2 1 23 23 H 1.09006 * 109.46439 * 60.00502 * 1 2 3 24 24 H 1.09001 * 109.47047 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47168 * 300.00950 * 1 2 3 26 26 H 1.09007 * 109.46900 * 94.65746 * 5 4 2 27 27 H 1.08997 * 109.47550 * 214.65587 * 5 4 2 28 28 H 1.09000 * 109.47516 * 334.65949 * 5 4 2 29 29 H 1.09004 * 109.46581 * 299.99344 * 9 6 4 30 30 H 1.08988 * 109.47457 * 59.99780 * 9 6 4 31 31 H 1.08999 * 109.47259 * 299.99794 * 10 9 6 32 32 H 1.09003 * 109.47173 * 59.99612 * 10 9 6 33 33 H 0.97006 * 119.99642 * 180.02562 * 14 13 11 34 34 H 1.09001 * 109.46946 * 39.55677 * 20 19 2 35 35 H 1.09008 * 109.46641 * 159.55086 * 20 19 2 36 36 H 1.08991 * 109.47601 * 279.54929 * 20 19 2 37 37 H 1.08999 * 117.49433 * 359.97438 * 21 19 2 38 38 H 1.08993 * 117.49724 * 145.02121 * 21 19 2 39 39 H 1.09004 * 117.49521 * 214.98253 * 22 19 2 40 40 H 1.08997 * 117.49657 * 359.97438 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 1.5448 -2.0416 1.5066 6 16 3.1054 0.0563 2.1976 7 8 3.7992 -1.0147 2.8227 8 8 3.7848 0.9759 1.3538 9 6 2.0775 0.9389 3.4039 10 6 2.9770 1.6775 4.3969 11 6 2.1231 2.4112 5.3987 12 1 1.0465 2.3566 5.3333 13 6 2.7163 3.1523 6.3987 14 7 4.0273 3.2184 6.4786 15 14 1.6578 4.0623 7.6400 16 1 0.8058 3.0903 8.3711 17 1 2.5308 4.7781 8.6047 18 1 0.7951 5.0417 6.9313 19 6 2.0401 -0.7213 -1.2492 20 6 1.6913 -2.2082 -1.3412 21 6 3.3865 -0.2748 -1.8226 22 6 2.0885 0.0751 -2.5546 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8898 26 1 2.2477 -2.7734 1.1083 27 1 1.4697 -2.1610 2.5875 28 1 0.5648 -2.1959 1.0551 29 1 1.4431 1.6570 2.8841 30 1 1.4535 0.2248 3.9410 31 1 3.6112 0.9592 4.9166 32 1 3.6014 2.3916 3.8600 33 1 4.4446 3.7395 7.1824 34 1 0.6743 -2.3657 -0.9818 35 1 1.7647 -2.5350 -2.3785 36 1 2.3861 -2.7830 -0.7291 37 1 3.9086 0.5332 -1.3100 38 1 4.0235 -1.0402 -2.2657 39 1 1.8721 -0.4603 -3.4791 40 1 1.7565 1.1129 -2.5236 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176787985.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:38 Heat of formation + Delta-G solvation = -80.363996 kcal Electronic energy + Delta-G solvation = -20497.038303 eV Core-core repulsion = 17438.690547 eV Total energy + Delta-G solvation = -3058.347756 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.06419 -38.18778 -36.99952 -36.33533 -35.91007 -33.14119 -31.29602 -29.57232 -27.61374 -27.24127 -24.13357 -23.25739 -23.13747 -20.39947 -19.49652 -19.09750 -18.35360 -17.24933 -17.16683 -16.55539 -16.28680 -15.73055 -15.43918 -15.15370 -15.07884 -14.47005 -13.90549 -13.80727 -13.69960 -13.40803 -13.17585 -13.14633 -12.98490 -12.91036 -12.83079 -12.80193 -12.69100 -12.32535 -12.28264 -12.24644 -12.13608 -11.76734 -11.60677 -11.18929 -11.11438 -10.65327 -10.53066 -9.84245 -8.27008 -6.41824 -0.70931 1.40153 1.43982 1.52239 1.74794 2.37499 2.83773 2.90557 3.06106 3.19687 3.63044 3.85092 3.89320 4.05930 4.10431 4.10821 4.14904 4.39182 4.51606 4.68333 4.72767 4.77210 4.82850 4.86030 4.97940 4.98208 5.07323 5.10573 5.18923 5.24148 5.24599 5.29522 5.32466 5.37489 5.57939 5.66428 5.75802 6.04355 6.71493 7.28599 8.85190 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.031419 B = 0.004585 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.971385 B = 6105.190617 C = 6208.243413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.173 3.827 3 H 0.079 0.921 4 N -0.988 5.988 5 C 0.081 3.919 6 S 2.608 3.392 7 O -0.996 6.996 8 O -0.992 6.992 9 C -0.588 4.588 10 C 0.022 3.978 11 C -0.541 4.541 12 H 0.076 0.924 13 C -0.004 4.004 14 N -0.935 5.935 15 Si 0.976 3.024 16 H -0.262 1.262 17 H -0.284 1.284 18 H -0.262 1.262 19 C -0.139 4.139 20 C -0.114 4.114 21 C -0.202 4.202 22 C -0.147 4.147 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.109 0.891 29 H 0.139 0.861 30 H 0.140 0.860 31 H 0.004 0.996 32 H 0.004 0.996 33 H 0.268 0.732 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.096 0.904 39 H 0.115 0.885 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.047 -9.967 -16.653 22.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.067 3.933 3 H 0.097 0.903 4 N -0.826 5.826 5 C -0.064 4.064 6 S 2.706 3.294 7 O -0.986 6.986 8 O -0.982 6.982 9 C -0.720 4.720 10 C -0.017 4.017 11 C -0.580 4.580 12 H 0.094 0.906 13 C -0.202 4.202 14 N -0.575 5.575 15 Si 0.799 3.201 16 H -0.187 1.187 17 H -0.209 1.209 18 H -0.187 1.187 19 C -0.141 4.141 20 C -0.171 4.171 21 C -0.239 4.239 22 C -0.185 4.185 23 H 0.102 0.898 24 H 0.101 0.899 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.127 0.873 29 H 0.157 0.843 30 H 0.158 0.842 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.115 0.885 39 H 0.133 0.867 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.955 -9.995 -16.645 21.819 hybrid contribution -0.113 0.858 1.135 1.427 sum -10.068 -9.138 -15.510 20.626 Atomic orbital electron populations 1.22151 0.91968 1.04081 1.03335 1.20585 0.96187 0.94620 0.81896 0.90251 1.57318 1.63760 1.25916 1.35644 1.21879 1.01890 0.81079 1.01509 1.04861 0.75629 0.73996 0.74895 1.93482 1.72006 1.54500 1.78659 1.93478 1.72432 1.66618 1.65649 1.30398 1.14101 1.13180 1.14330 1.18803 0.94461 0.94751 0.93709 1.21481 0.93892 1.30289 1.12291 0.90577 1.26145 0.96428 0.97453 1.00188 1.70106 1.10997 1.41823 1.34539 0.85343 0.78216 0.78646 0.77916 1.18676 1.20913 1.18684 1.21865 1.00622 0.97394 0.94223 1.21509 1.02359 0.91014 1.02169 1.23120 0.91667 1.03836 1.05322 1.23132 0.99384 1.01049 0.94939 0.89847 0.89946 0.91838 0.92285 0.91494 0.87255 0.84285 0.84161 0.97807 0.97773 0.92354 0.90070 0.91631 0.92704 0.90705 0.88533 0.86683 0.88415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 8.88 71.98 0.64 -1.78 16 2 C 0.17 3.90 2.49 44.99 0.11 4.01 16 3 H 0.08 2.09 6.98 -2.39 -0.02 2.08 16 4 N -0.99 -25.96 3.00 -516.50 -1.55 -27.51 16 5 C 0.08 1.63 8.19 127.77 1.05 2.68 16 6 S 2.61 97.99 5.36 -56.49 -0.30 97.68 16 7 O -1.00 -43.46 17.18 -127.65 -2.19 -45.65 16 8 O -0.99 -42.73 16.59 -127.65 -2.12 -44.84 16 9 C -0.59 -22.96 6.12 71.98 0.44 -22.52 16 10 C 0.02 1.16 4.98 29.85 0.15 1.31 16 11 C -0.54 -30.35 9.11 25.60 0.23 -30.12 16 12 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16 13 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 14 N -0.94 -57.60 13.29 21.45 0.28 -57.32 16 15 Si 0.98 43.41 29.54 68.60 2.03 45.44 16 16 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 17 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 18 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 19 C -0.14 -2.81 1.81 -52.18 -0.09 -2.91 16 20 C -0.11 -1.76 8.15 71.98 0.59 -1.18 16 21 C -0.20 -4.85 9.95 30.62 0.30 -4.54 16 22 C -0.15 -2.56 9.90 30.62 0.30 -2.26 16 23 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 24 H 0.08 0.96 5.13 -2.39 -0.01 0.95 16 25 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.06 1.19 6.51 -2.38 -0.02 1.18 16 27 H 0.07 1.36 7.96 -2.39 -0.02 1.34 16 28 H 0.11 1.41 5.15 -2.39 -0.01 1.39 16 29 H 0.14 4.76 8.14 -2.39 -0.02 4.74 16 30 H 0.14 4.78 8.14 -2.40 -0.02 4.76 16 31 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 33 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 34 H 0.08 0.94 5.63 -2.39 -0.01 0.93 16 35 H 0.06 0.85 7.94 -2.38 -0.02 0.83 16 36 H 0.05 0.96 6.32 -2.39 -0.02 0.95 16 37 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 38 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.11 1.50 8.08 -2.39 -0.02 1.48 16 40 H 0.10 1.63 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -75.45 330.29 1.34 -74.11 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 1.01 Total: 15.15 kcal Atomic # 6 Polarization: -61.24 SS G_CDS: 4.18 Total: -57.06 kcal Atomic # 7 Polarization: -83.56 SS G_CDS: -1.27 Total: -84.83 kcal Atomic # 8 Polarization: -86.19 SS G_CDS: -4.31 Total: -90.50 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: 97.99 SS G_CDS: -0.30 Total: 97.68 kcal Total: -75.45 1.34 -74.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176787985.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.254 kcal (2) G-P(sol) polarization free energy of solvation -75.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds