Wall clock time and date at job start Mon Mar 30 2020 02:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.51491 * 2 1 4 4 C 1.53300 * 109.51077 * 239.89684 * 2 1 3 5 5 N 1.47264 * 108.32660 * 292.33703 * 4 2 1 6 6 C 1.34778 * 120.95687 * 129.51242 * 5 4 2 7 7 O 1.21687 * 120.00094 * 184.70667 * 6 5 4 8 8 C 1.46370 * 119.99860 * 4.70210 * 6 5 4 9 9 H 1.07996 * 120.00392 * 352.00671 * 8 6 5 10 10 C 1.40055 * 119.99912 * 172.00794 * 8 6 5 11 11 N 1.30672 * 119.99986 * 167.85067 * 10 8 6 12 12 Si 1.86800 * 119.99989 * 347.85039 * 10 8 6 13 13 H 1.48502 * 109.46929 * 85.05643 * 12 10 8 14 14 H 1.48495 * 109.47365 * 205.05729 * 12 10 8 15 15 H 1.48498 * 109.47016 * 325.06103 * 12 10 8 16 16 C 1.47150 * 118.05804 * 309.49117 * 5 4 2 17 17 H 1.08997 * 109.68253 * 290.80974 * 16 5 4 18 18 C 1.50703 * 109.70919 * 170.27689 * 16 5 4 19 19 C 1.38240 * 120.00135 * 295.30905 * 18 16 5 20 20 C 1.38234 * 119.99989 * 179.78903 * 19 18 16 21 21 C 1.38234 * 119.99904 * 0.44460 * 20 19 18 22 22 C 1.38228 * 120.00205 * 359.80735 * 21 20 19 23 23 C 1.38230 * 120.00258 * 359.97438 * 22 21 20 24 24 C 1.53291 * 108.38658 * 50.53575 * 16 5 4 25 25 O 1.42961 * 109.22285 * 307.69471 * 24 16 5 26 26 H 1.09003 * 109.46831 * 300.00026 * 1 2 3 27 27 H 1.09004 * 109.47681 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47117 * 59.99541 * 1 2 3 29 29 H 1.09000 * 109.67546 * 52.10282 * 4 2 1 30 30 H 1.08993 * 109.67974 * 172.65523 * 4 2 1 31 31 H 0.96998 * 119.99807 * 180.02562 * 11 10 8 32 32 H 1.08001 * 119.99331 * 359.97438 * 19 18 16 33 33 H 1.07997 * 119.99913 * 180.27355 * 20 19 18 34 34 H 1.08004 * 119.99699 * 179.83567 * 21 20 19 35 35 H 1.08007 * 120.00126 * 180.02562 * 22 21 20 36 36 H 1.07999 * 120.00826 * 179.97438 * 23 22 21 37 37 H 1.09006 * 109.50969 * 187.77047 * 24 16 5 38 38 H 1.08998 * 109.51116 * 67.62464 * 24 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7247 -1.2501 5 7 1.6958 -2.1513 -1.1326 6 6 1.0715 -2.7981 -2.1368 7 8 0.7169 -3.9528 -1.9892 8 6 0.8197 -2.1117 -3.4047 9 1 1.0154 -1.0533 -3.4940 10 6 0.3250 -2.8273 -4.5023 11 7 -0.1227 -2.1886 -5.5507 12 14 0.3052 -4.6949 -4.4675 13 1 -0.9289 -5.1642 -3.7877 14 1 0.3334 -5.2162 -5.8576 15 1 1.4953 -5.1888 -3.7293 16 6 2.0520 -2.8497 0.1126 17 1 3.1351 -2.9532 0.1786 18 6 1.4099 -4.2129 0.1323 19 6 0.0327 -4.3279 0.1679 20 6 -0.5564 -5.5783 0.1815 21 6 0.2318 -6.7138 0.1689 22 6 1.6090 -6.5990 0.1386 23 6 2.1981 -5.3486 0.1204 24 6 1.5395 -2.0205 1.2956 25 8 2.0075 -0.6759 1.1658 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 -0.8899 29 1 1.5703 -0.3032 -2.1377 30 1 3.1240 -0.6143 -1.3211 31 1 -0.4657 -2.6842 -6.3107 32 1 -0.5829 -3.4406 0.1820 33 1 -1.6324 -5.6681 0.2048 34 1 -0.2284 -7.6908 0.1822 35 1 2.2248 -7.4862 0.1283 36 1 3.2741 -5.2587 0.0971 37 1 1.9113 -2.4470 2.2274 38 1 0.4496 -2.0279 1.3004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187496919.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:36 Heat of formation + Delta-G solvation = -39.356952 kcal Electronic energy + Delta-G solvation = -22674.457064 eV Core-core repulsion = 19482.443556 eV Total energy + Delta-G solvation = -3192.013509 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.19680 -38.18402 -37.07811 -33.84552 -33.12547 -32.58816 -30.28043 -30.22214 -27.80556 -26.68418 -25.56718 -23.73593 -21.99745 -21.08250 -20.44920 -18.68485 -17.09221 -16.49678 -16.11572 -15.80647 -15.31844 -14.82588 -14.71789 -14.63220 -13.99995 -13.66324 -13.56064 -12.84348 -12.68703 -12.55824 -12.41640 -12.09799 -11.94719 -11.80404 -11.60420 -11.23247 -11.02878 -10.92797 -10.65995 -10.42633 -10.38801 -10.13118 -9.58731 -9.46808 -9.06505 -8.74087 -8.20811 -7.52137 -6.91816 -6.66463 -4.89462 2.04812 2.16105 3.43823 3.48975 3.72888 3.92673 4.07886 4.18009 4.49746 4.58433 5.05616 5.19939 5.23144 5.32352 5.36504 5.44363 5.51002 5.59250 5.62664 5.72359 5.79693 5.90004 6.04892 6.09522 6.13561 6.20609 6.28177 6.33639 6.50227 6.63174 6.72373 6.92477 7.10275 7.16468 7.25916 7.39116 7.49593 7.71892 7.79847 8.22909 8.64944 9.06651 9.99663 10.31800 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.013345 B = 0.011463 C = 0.006984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.617512 B = 2441.988075 C = 4008.001231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.070 3.930 3 H 0.105 0.895 4 C 0.093 3.907 5 N -0.628 5.628 6 C 0.549 3.451 7 O -0.581 6.581 8 C -0.532 4.532 9 H 0.088 0.912 10 C 0.104 3.896 11 N -0.825 5.825 12 Si 0.966 3.034 13 H -0.278 1.278 14 H -0.327 1.327 15 H -0.262 1.262 16 C 0.156 3.844 17 H 0.070 0.930 18 C -0.027 4.027 19 C -0.048 4.048 20 C -0.127 4.127 21 C -0.132 4.132 22 C -0.127 4.127 23 C -0.122 4.122 24 C 0.052 3.948 25 O -0.380 6.380 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.107 0.893 30 H 0.056 0.944 31 H 0.282 0.718 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.214 0.195 11.299 11.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.012 3.988 3 H 0.122 0.878 4 C -0.031 4.031 5 N -0.363 5.363 6 C 0.360 3.640 7 O -0.473 6.473 8 C -0.567 4.567 9 H 0.106 0.894 10 C -0.114 4.114 11 N -0.454 5.454 12 Si 0.800 3.200 13 H -0.205 1.205 14 H -0.259 1.259 15 H -0.188 1.188 16 C 0.051 3.949 17 H 0.087 0.913 18 C -0.028 4.028 19 C -0.066 4.066 20 C -0.145 4.145 21 C -0.150 4.150 22 C -0.145 4.145 23 C -0.141 4.141 24 C -0.025 4.025 25 O -0.299 6.299 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.125 0.875 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.122 0.878 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.113 0.887 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.082 -0.205 11.321 11.513 hybrid contribution -0.208 -0.711 -0.617 0.964 sum 1.874 -0.915 10.704 10.905 Atomic orbital electron populations 1.22317 0.95992 1.03162 1.02094 1.22661 0.94169 0.96156 0.85843 0.87763 1.22233 0.99716 0.82416 0.98717 1.47841 1.63800 1.09504 1.15188 1.18301 0.76545 0.85452 0.83721 1.90375 1.58562 1.19169 1.79188 1.20772 1.44520 0.97769 0.93634 0.89450 1.25761 0.89372 1.02635 0.93639 1.69570 1.30686 1.39374 1.05820 0.85172 0.81423 0.80912 0.72544 1.20466 1.25941 1.18754 1.20494 0.98181 0.89937 0.86254 0.91261 1.19217 0.93829 0.92992 0.96739 1.20527 0.93815 0.96650 0.95622 1.20788 0.98736 0.92784 1.02241 1.20815 0.93911 0.97639 1.02622 1.20763 0.94738 0.96604 1.02364 1.20638 0.98500 0.92253 1.02706 1.23034 0.99302 0.82437 0.97755 1.87933 1.72634 1.25415 1.43923 0.92654 0.91716 0.91127 0.87529 0.92536 0.90797 0.87784 0.87451 0.87524 0.87402 0.87445 0.88664 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.65 8.81 37.16 0.33 -2.32 16 2 C 0.07 1.04 3.93 -26.58 -0.10 0.94 16 3 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 4 C 0.09 1.63 5.90 -3.47 -0.02 1.61 16 5 N -0.63 -12.85 2.53 -167.62 -0.42 -13.28 16 6 C 0.55 13.64 7.11 -12.99 -0.09 13.55 16 7 O -0.58 -15.25 7.31 5.20 0.04 -15.21 16 8 C -0.53 -14.27 9.40 -35.63 -0.33 -14.61 16 9 H 0.09 2.33 5.95 -52.49 -0.31 2.02 16 10 C 0.10 2.90 5.52 -17.36 -0.10 2.80 16 11 N -0.83 -22.99 13.92 55.55 0.77 -22.21 16 12 Si 0.97 25.37 25.84 -169.99 -4.39 20.98 16 13 H -0.28 -7.55 7.11 56.52 0.40 -7.15 16 14 H -0.33 -8.33 7.11 56.52 0.40 -7.93 16 15 H -0.26 -7.27 6.67 56.52 0.38 -6.90 16 16 C 0.16 2.81 3.29 -68.58 -0.23 2.58 16 17 H 0.07 1.21 7.90 -51.93 -0.41 0.80 16 18 C -0.03 -0.52 2.91 -104.62 -0.30 -0.82 16 19 C -0.05 -0.93 6.23 -39.58 -0.25 -1.18 16 20 C -0.13 -2.36 10.03 -39.58 -0.40 -2.76 16 21 C -0.13 -2.31 10.05 -39.59 -0.40 -2.71 16 22 C -0.13 -2.21 10.05 -39.59 -0.40 -2.61 16 23 C -0.12 -2.25 9.59 -39.58 -0.38 -2.63 16 24 C 0.05 0.81 5.77 37.31 0.22 1.02 16 25 O -0.38 -5.99 10.58 -35.23 -0.37 -6.36 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 1.10 6.11 -51.93 -0.32 0.78 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.11 1.99 5.48 -51.93 -0.28 1.70 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.28 7.30 8.29 -40.82 -0.34 6.96 16 32 H 0.10 2.03 7.20 -52.49 -0.38 1.65 16 33 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 35 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 36 H 0.11 1.78 7.96 -52.49 -0.42 1.36 16 37 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.06 0.94 4.95 -51.93 -0.26 0.68 16 LS Contribution 298.36 15.07 4.50 4.50 Total: -1.00 -30.63 298.36 -7.25 -37.88 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -4.92 Total: 0.82 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -2.45 Total: -7.13 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.35 Total: -35.49 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.33 Total: -21.57 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -4.39 Total: 20.98 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.63 -7.25 -37.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187496919.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.476 kcal (2) G-P(sol) polarization free energy of solvation -30.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds