Wall clock time and date at job start Mon Mar 30 2020 02:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.51491 * 2 1 4 4 C 1.53300 * 109.51077 * 239.89684 * 2 1 3 5 5 N 1.47264 * 108.32660 * 292.33703 * 4 2 1 6 6 C 1.34778 * 120.95687 * 129.51242 * 5 4 2 7 7 O 1.21687 * 120.00094 * 184.70667 * 6 5 4 8 8 C 1.46370 * 119.99860 * 4.70210 * 6 5 4 9 9 H 1.07996 * 120.00392 * 352.00671 * 8 6 5 10 10 C 1.40055 * 119.99912 * 172.00794 * 8 6 5 11 11 N 1.30672 * 119.99986 * 167.85067 * 10 8 6 12 12 Si 1.86800 * 119.99989 * 347.85039 * 10 8 6 13 13 H 1.48502 * 109.46929 * 85.05643 * 12 10 8 14 14 H 1.48495 * 109.47365 * 205.05729 * 12 10 8 15 15 H 1.48498 * 109.47016 * 325.06103 * 12 10 8 16 16 C 1.47150 * 118.05804 * 309.49117 * 5 4 2 17 17 H 1.08997 * 109.68253 * 290.80974 * 16 5 4 18 18 C 1.50703 * 109.70919 * 170.27689 * 16 5 4 19 19 C 1.38240 * 120.00135 * 295.30905 * 18 16 5 20 20 C 1.38234 * 119.99989 * 179.78903 * 19 18 16 21 21 C 1.38234 * 119.99904 * 0.44460 * 20 19 18 22 22 C 1.38228 * 120.00205 * 359.80735 * 21 20 19 23 23 C 1.38230 * 120.00258 * 359.97438 * 22 21 20 24 24 C 1.53291 * 108.38658 * 50.53575 * 16 5 4 25 25 O 1.42961 * 109.22285 * 307.69471 * 24 16 5 26 26 H 1.09003 * 109.46831 * 300.00026 * 1 2 3 27 27 H 1.09004 * 109.47681 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47117 * 59.99541 * 1 2 3 29 29 H 1.09000 * 109.67546 * 52.10282 * 4 2 1 30 30 H 1.08993 * 109.67974 * 172.65523 * 4 2 1 31 31 H 0.96998 * 119.99807 * 180.02562 * 11 10 8 32 32 H 1.08001 * 119.99331 * 359.97438 * 19 18 16 33 33 H 1.07997 * 119.99913 * 180.27355 * 20 19 18 34 34 H 1.08004 * 119.99699 * 179.83567 * 21 20 19 35 35 H 1.08007 * 120.00126 * 180.02562 * 22 21 20 36 36 H 1.07999 * 120.00826 * 179.97438 * 23 22 21 37 37 H 1.09006 * 109.50969 * 187.77047 * 24 16 5 38 38 H 1.08998 * 109.51116 * 67.62464 * 24 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7247 -1.2501 5 7 1.6958 -2.1513 -1.1326 6 6 1.0715 -2.7981 -2.1368 7 8 0.7169 -3.9528 -1.9892 8 6 0.8197 -2.1117 -3.4047 9 1 1.0154 -1.0533 -3.4940 10 6 0.3250 -2.8273 -4.5023 11 7 -0.1227 -2.1886 -5.5507 12 14 0.3052 -4.6949 -4.4675 13 1 -0.9289 -5.1642 -3.7877 14 1 0.3334 -5.2162 -5.8576 15 1 1.4953 -5.1888 -3.7293 16 6 2.0520 -2.8497 0.1126 17 1 3.1351 -2.9532 0.1786 18 6 1.4099 -4.2129 0.1323 19 6 0.0327 -4.3279 0.1679 20 6 -0.5564 -5.5783 0.1815 21 6 0.2318 -6.7138 0.1689 22 6 1.6090 -6.5990 0.1386 23 6 2.1981 -5.3486 0.1204 24 6 1.5395 -2.0205 1.2956 25 8 2.0075 -0.6759 1.1658 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 -0.8899 29 1 1.5703 -0.3032 -2.1377 30 1 3.1240 -0.6143 -1.3211 31 1 -0.4657 -2.6842 -6.3107 32 1 -0.5829 -3.4406 0.1820 33 1 -1.6324 -5.6681 0.2048 34 1 -0.2284 -7.6908 0.1822 35 1 2.2248 -7.4862 0.1283 36 1 3.2741 -5.2587 0.0971 37 1 1.9113 -2.4470 2.2274 38 1 0.4496 -2.0279 1.3004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187496919.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:36 Heat of formation + Delta-G solvation = -57.983927 kcal Electronic energy + Delta-G solvation = -22675.264790 eV Core-core repulsion = 19482.443556 eV Total energy + Delta-G solvation = -3192.821235 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.67558 -39.52999 -38.80359 -35.45765 -35.00602 -34.13051 -31.66337 -31.61334 -29.25257 -28.50415 -27.05387 -25.13937 -23.39333 -22.66186 -21.90549 -20.26448 -18.80391 -18.06887 -17.77064 -17.26628 -16.81537 -16.34328 -16.26982 -16.05259 -15.64745 -15.11690 -14.97975 -14.48608 -14.35688 -14.12791 -14.01483 -13.85076 -13.43689 -13.25899 -13.03667 -12.95649 -12.61726 -12.42404 -12.30625 -11.99603 -11.77557 -11.53573 -11.35329 -11.20739 -10.94254 -10.40594 -9.65036 -9.11372 -8.82481 -8.56911 -6.97625 0.63200 0.73643 1.32877 1.38109 1.61578 2.13635 2.29347 2.52991 2.83964 3.11301 3.38420 3.71664 3.87034 3.97621 4.00306 4.13542 4.24200 4.28770 4.31267 4.37446 4.55124 4.61928 4.68384 4.74472 4.84250 4.91521 4.95496 4.97092 5.12902 5.26354 5.27662 5.34505 5.65231 5.71115 5.76058 5.82587 5.95524 6.15096 6.23311 6.33882 6.63618 7.15027 8.05981 8.25968 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.013345 B = 0.011463 C = 0.006984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.617512 B = 2441.988075 C = 4008.001231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.076 3.924 3 H 0.138 0.862 4 C 0.088 3.912 5 N -0.626 5.626 6 C 0.552 3.448 7 O -0.597 6.597 8 C -0.549 4.549 9 H 0.082 0.918 10 C 0.075 3.925 11 N -0.850 5.850 12 Si 1.013 2.987 13 H -0.294 1.294 14 H -0.316 1.316 15 H -0.285 1.285 16 C 0.153 3.847 17 H 0.078 0.922 18 C -0.043 4.043 19 C -0.064 4.064 20 C -0.143 4.143 21 C -0.138 4.138 22 C -0.132 4.132 23 C -0.135 4.135 24 C 0.060 3.940 25 O -0.379 6.379 26 H 0.076 0.924 27 H 0.038 0.962 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.289 0.711 32 H 0.094 0.906 33 H 0.120 0.880 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.996 0.033 12.789 13.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.018 3.982 3 H 0.156 0.844 4 C -0.036 4.036 5 N -0.361 5.361 6 C 0.359 3.641 7 O -0.489 6.489 8 C -0.585 4.585 9 H 0.100 0.900 10 C -0.140 4.140 11 N -0.481 5.481 12 Si 0.848 3.152 13 H -0.222 1.222 14 H -0.248 1.248 15 H -0.212 1.212 16 C 0.049 3.951 17 H 0.096 0.904 18 C -0.044 4.044 19 C -0.083 4.083 20 C -0.161 4.161 21 C -0.156 4.156 22 C -0.150 4.150 23 C -0.154 4.154 24 C -0.018 4.018 25 O -0.298 6.298 26 H 0.095 0.905 27 H 0.057 0.943 28 H 0.086 0.914 29 H 0.109 0.891 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.138 0.862 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.876 -0.343 12.823 13.146 hybrid contribution -0.418 -0.673 -0.979 1.259 sum 2.459 -1.016 11.843 12.138 Atomic orbital electron populations 1.22276 0.96102 1.01724 1.03021 1.22732 0.94022 0.97187 0.84212 0.84435 1.22415 1.00461 0.80933 0.99745 1.47733 1.62441 1.10703 1.15180 1.18129 0.76582 0.85241 0.84133 1.90359 1.58968 1.19734 1.79834 1.21016 1.44896 0.97840 0.94749 0.90032 1.26159 0.89729 1.04170 0.93958 1.69582 1.32065 1.40035 1.06445 0.84492 0.79313 0.79079 0.72356 1.22154 1.24765 1.21156 1.20720 0.98614 0.89914 0.85838 0.90429 1.19387 0.93865 0.93789 0.97334 1.20569 0.94190 0.96765 0.96743 1.21105 0.99785 0.93013 1.02234 1.21196 0.94182 0.98532 1.01656 1.21172 0.95197 0.97381 1.01278 1.20980 0.99437 0.92548 1.02421 1.23023 0.99103 0.82061 0.97566 1.87948 1.72640 1.25339 1.43855 0.90496 0.94291 0.91431 0.89079 0.91243 0.90114 0.88830 0.86240 0.84850 0.84626 0.85955 0.86078 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.91 8.81 71.98 0.63 -4.28 16 2 C 0.08 2.10 3.93 30.69 0.12 2.22 16 3 H 0.14 2.93 8.14 -2.39 -0.02 2.91 16 4 C 0.09 2.96 5.90 86.33 0.51 3.47 16 5 N -0.63 -25.23 2.53 -802.45 -2.03 -27.26 16 6 C 0.55 27.49 7.11 86.36 0.61 28.10 16 7 O -0.60 -31.35 7.31 -4.31 -0.03 -31.39 16 8 C -0.55 -29.85 9.40 24.83 0.23 -29.61 16 9 H 0.08 4.44 5.95 -2.91 -0.02 4.42 16 10 C 0.08 4.23 5.52 85.31 0.47 4.70 16 11 N -0.85 -47.74 13.92 21.84 0.30 -47.43 16 12 Si 1.01 52.94 25.84 68.60 1.77 54.71 16 13 H -0.29 -15.95 7.11 99.48 0.71 -15.24 16 14 H -0.32 -15.64 7.11 99.48 0.71 -14.93 16 15 H -0.28 -15.77 6.67 99.48 0.66 -15.11 16 16 C 0.15 5.29 3.29 44.22 0.15 5.44 16 17 H 0.08 2.56 7.90 -2.39 -0.02 2.54 16 18 C -0.04 -1.61 2.91 -19.86 -0.06 -1.67 16 19 C -0.06 -2.48 6.23 22.27 0.14 -2.34 16 20 C -0.14 -5.21 10.03 22.27 0.22 -4.99 16 21 C -0.14 -4.57 10.05 22.27 0.22 -4.35 16 22 C -0.13 -4.34 10.05 22.27 0.22 -4.12 16 23 C -0.14 -4.76 9.59 22.27 0.21 -4.55 16 24 C 0.06 1.72 5.77 72.08 0.42 2.14 16 25 O -0.38 -10.84 10.58 -148.98 -1.58 -12.41 16 26 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.04 1.30 6.11 -2.39 -0.01 1.28 16 28 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.09 3.38 5.48 -2.39 -0.01 3.37 16 30 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.29 15.00 8.29 -92.71 -0.77 14.23 16 32 H 0.09 3.72 7.20 -2.91 -0.02 3.70 16 33 H 0.12 3.89 8.06 -2.91 -0.02 3.87 16 34 H 0.13 3.61 8.06 -2.91 -0.02 3.59 16 35 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16 36 H 0.12 3.81 7.96 -2.91 -0.02 3.79 16 37 H 0.12 2.86 8.14 -2.38 -0.02 2.84 16 38 H 0.06 1.66 4.95 -2.39 -0.01 1.65 16 Total: -1.00 -64.85 298.36 3.56 -61.28 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 1.02 Total: 12.35 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: 4.11 Total: -9.85 kcal Atomic # 7 Polarization: -72.97 SS G_CDS: -1.73 Total: -74.70 kcal Atomic # 8 Polarization: -42.19 SS G_CDS: -1.61 Total: -43.80 kcal Atomic # 14 Polarization: 52.94 SS G_CDS: 1.77 Total: 54.71 kcal Total: -64.85 3.56 -61.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187496919.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.299 kcal (2) G-P(sol) polarization free energy of solvation -64.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds