Wall clock time and date at job start Mon Mar 30 2020 02:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.54622 * 2 1 4 4 C 1.53293 * 109.51426 * 120.12505 * 2 1 3 5 5 N 1.47148 * 108.38542 * 172.22744 * 4 2 1 6 6 C 1.34772 * 120.98080 * 129.44565 * 5 4 2 7 7 O 1.21687 * 120.00030 * 174.95174 * 6 5 4 8 8 C 1.46371 * 120.00073 * 354.94323 * 6 5 4 9 9 H 1.07997 * 120.00448 * 9.56350 * 8 6 5 10 10 C 1.40057 * 119.99792 * 189.56369 * 8 6 5 11 11 N 1.30678 * 119.99771 * 184.76022 * 10 8 6 12 12 Si 1.86797 * 120.00069 * 4.76307 * 10 8 6 13 13 H 1.48503 * 109.46727 * 179.97438 * 12 10 8 14 14 H 1.48499 * 109.46958 * 299.99864 * 12 10 8 15 15 H 1.48498 * 109.47142 * 60.00035 * 12 10 8 16 16 C 1.47153 * 118.03470 * 309.71546 * 5 4 2 17 17 H 1.09000 * 109.68505 * 290.56237 * 16 5 4 18 18 C 1.50700 * 109.68005 * 170.00478 * 16 5 4 19 19 C 1.38231 * 120.00233 * 304.70934 * 18 16 5 20 20 C 1.38236 * 119.99737 * 179.74077 * 19 18 16 21 21 C 1.38231 * 120.00315 * 0.53291 * 20 19 18 22 22 C 1.38238 * 119.99650 * 359.74357 * 21 20 19 23 23 C 1.38225 * 120.00076 * 359.97438 * 22 21 20 24 24 C 1.52882 * 108.60492 * 50.23106 * 16 5 4 25 25 O 1.42959 * 109.51315 * 239.87243 * 2 1 3 26 26 H 1.08994 * 109.47054 * 299.87279 * 1 2 3 27 27 H 1.09001 * 109.47053 * 59.87812 * 1 2 3 28 28 H 1.09008 * 109.46763 * 179.87474 * 1 2 3 29 29 H 1.09001 * 109.67993 * 52.50394 * 4 2 1 30 30 H 1.09001 * 109.71280 * 291.97155 * 4 2 1 31 31 H 0.97004 * 119.99835 * 354.86723 * 11 10 8 32 32 H 1.07997 * 120.00245 * 0.02562 * 19 18 16 33 33 H 1.08001 * 119.99749 * 180.29983 * 20 19 18 34 34 H 1.08000 * 120.00227 * 179.76729 * 21 20 19 35 35 H 1.07998 * 119.99617 * 179.97438 * 22 21 20 36 36 H 1.08003 * 119.99941 * 179.97438 * 23 22 21 37 37 H 1.09000 * 109.57882 * 187.92751 * 24 16 5 38 38 H 1.08990 * 109.41453 * 67.84152 * 24 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 6 2.0422 -0.7252 1.2497 5 7 3.5013 -0.8761 1.1336 6 6 4.3194 -0.5033 2.1376 7 8 5.5143 -0.7200 2.0611 8 6 3.7706 0.1624 3.3200 9 1 2.7013 0.2176 3.4612 10 6 4.6322 0.7280 4.2683 11 7 4.1473 1.2398 5.3686 12 14 6.4745 0.7507 3.9603 13 1 7.1599 1.4003 5.1064 14 1 6.9687 -0.6417 3.8118 15 1 6.7592 1.5123 2.7177 16 6 4.0411 -1.4405 -0.1136 17 1 3.7796 -2.4964 -0.1822 18 6 5.5400 -1.2857 -0.1336 19 6 6.1081 -0.0362 0.0294 20 6 7.4832 0.1049 0.0163 21 6 8.2898 -1.0019 -0.1708 22 6 7.7215 -2.2507 -0.3395 23 6 6.3467 -2.3927 -0.3206 24 6 3.4313 -0.6853 -1.2948 25 8 2.0076 -0.6763 -1.1654 26 1 -0.3633 0.5118 0.8911 27 1 -0.3633 0.5157 -0.8889 28 1 -0.3633 -1.0278 -0.0022 29 1 1.5759 -1.7079 1.3208 30 1 1.8031 -0.1404 2.1380 31 1 3.1872 1.2955 5.4955 32 1 5.4778 0.8292 0.1716 33 1 7.9272 1.0805 0.1486 34 1 9.3640 -0.8911 -0.1847 35 1 8.3517 -3.1154 -0.4861 36 1 5.9027 -3.3683 -0.4529 37 1 3.7091 -1.1786 -2.2263 38 1 3.8029 0.3393 -1.3004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187496938.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:39 Heat of formation + Delta-G solvation = -46.405662 kcal Electronic energy + Delta-G solvation = -22454.343248 eV Core-core repulsion = 19262.024085 eV Total energy + Delta-G solvation = -3192.319164 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.14205 -38.16402 -37.12039 -33.92745 -33.36168 -32.79388 -30.61651 -30.21317 -27.61351 -26.18934 -25.66199 -23.23840 -22.05323 -21.08268 -20.87048 -19.01037 -17.56293 -16.43156 -16.36995 -15.72677 -15.45280 -14.76579 -14.71608 -14.27310 -14.09002 -13.75663 -13.47701 -12.92588 -12.75429 -12.61586 -12.51519 -12.20755 -12.14794 -11.89199 -11.60723 -11.37409 -10.98971 -10.66241 -10.53222 -10.39437 -10.31421 -10.23211 -9.66203 -9.16066 -9.07745 -8.57745 -8.22394 -7.60452 -7.26950 -6.80650 -4.98617 2.03514 2.16402 3.50805 3.62484 3.81429 3.95828 4.12371 4.22661 4.49327 4.55824 4.97398 5.14505 5.23449 5.31911 5.35911 5.40283 5.47593 5.57587 5.61350 5.69910 5.72104 5.85923 5.88569 5.99656 6.07284 6.12976 6.15825 6.26927 6.36578 6.62687 6.71218 6.99407 7.10725 7.17161 7.26752 7.35833 7.63066 7.67189 7.71037 8.02218 8.76015 8.85169 9.93989 10.26499 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.013158 B = 0.011046 C = 0.006524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.446813 B = 2534.238654 C = 4290.842326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.070 3.930 3 H 0.061 0.939 4 C 0.095 3.905 5 N -0.633 5.633 6 C 0.550 3.450 7 O -0.579 6.579 8 C -0.596 4.596 9 H 0.074 0.926 10 C 0.063 3.937 11 N -0.832 5.832 12 Si 1.120 2.880 13 H -0.325 1.325 14 H -0.276 1.276 15 H -0.288 1.288 16 C 0.156 3.844 17 H 0.069 0.931 18 C -0.043 4.043 19 C -0.033 4.033 20 C -0.134 4.134 21 C -0.125 4.125 22 C -0.133 4.133 23 C -0.119 4.119 24 C 0.060 3.940 25 O -0.383 6.383 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.103 0.897 31 H 0.277 0.723 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.058 -2.524 -11.826 12.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.011 3.989 3 H 0.079 0.921 4 C -0.029 4.029 5 N -0.368 5.368 6 C 0.361 3.639 7 O -0.471 6.471 8 C -0.632 4.632 9 H 0.092 0.908 10 C -0.155 4.155 11 N -0.459 5.459 12 Si 0.952 3.048 13 H -0.257 1.257 14 H -0.202 1.202 15 H -0.215 1.215 16 C 0.051 3.949 17 H 0.087 0.913 18 C -0.043 4.043 19 C -0.051 4.051 20 C -0.153 4.153 21 C -0.143 4.143 22 C -0.152 4.152 23 C -0.138 4.138 24 C -0.018 4.018 25 O -0.302 6.302 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.121 0.879 31 H 0.088 0.912 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.117 0.883 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.268 -2.314 -11.285 11.523 hybrid contribution -1.692 -0.350 -0.196 1.739 sum -1.960 -2.665 -11.480 11.947 Atomic orbital electron populations 1.21704 0.92911 1.02780 1.02386 1.22561 0.94862 0.95684 0.85782 0.92091 1.22199 0.81756 1.00251 0.98734 1.47995 1.05666 1.68003 1.15129 1.18485 0.85049 0.78002 0.82403 1.90365 1.15813 1.61796 1.79141 1.22134 0.95854 1.39262 1.05956 0.90783 1.27115 1.09144 0.89202 0.89995 1.70658 1.16812 1.35338 1.23127 0.82534 0.71463 0.77823 0.72941 1.25664 1.20229 1.21469 1.20400 0.90864 0.97456 0.86156 0.91329 1.19223 0.92994 0.93973 0.98127 1.20577 0.94662 0.96336 0.93551 1.20814 0.93719 0.98209 1.02522 1.20844 0.98664 0.93073 1.01731 1.20746 0.94546 0.96767 1.03106 1.20626 0.93626 0.96996 1.02549 1.22906 0.80896 1.00144 0.97841 1.87873 1.20849 1.77736 1.43728 0.90877 0.91974 0.91867 0.92714 0.87917 0.91183 0.87737 0.87306 0.87372 0.87320 0.87405 0.88342 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.57 37.16 0.36 -1.33 16 2 C 0.07 1.08 3.40 -26.57 -0.09 0.99 16 3 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 4 C 0.09 1.70 5.85 -3.54 -0.02 1.68 16 5 N -0.63 -13.34 3.01 -167.96 -0.51 -13.85 16 6 C 0.55 13.88 6.57 -12.99 -0.09 13.79 16 7 O -0.58 -15.33 7.26 5.20 0.04 -15.29 16 8 C -0.60 -16.07 9.27 -35.63 -0.33 -16.40 16 9 H 0.07 1.96 5.96 -52.49 -0.31 1.64 16 10 C 0.06 1.77 5.52 -17.36 -0.10 1.68 16 11 N -0.83 -23.57 13.65 55.55 0.76 -22.81 16 12 Si 1.12 29.23 26.07 -169.99 -4.43 24.80 16 13 H -0.32 -8.37 7.11 56.52 0.40 -7.96 16 14 H -0.28 -7.55 6.72 56.52 0.38 -7.17 16 15 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 16 C 0.16 2.86 3.26 -68.79 -0.22 2.64 16 17 H 0.07 1.22 7.90 -51.93 -0.41 0.81 16 18 C -0.04 -0.82 3.05 -104.62 -0.32 -1.14 16 19 C -0.03 -0.66 5.81 -39.58 -0.23 -0.89 16 20 C -0.13 -2.56 10.03 -39.58 -0.40 -2.96 16 21 C -0.12 -2.17 10.05 -39.58 -0.40 -2.57 16 22 C -0.13 -2.27 10.05 -39.59 -0.40 -2.67 16 23 C -0.12 -2.14 9.67 -39.59 -0.38 -2.53 16 24 C 0.06 0.94 6.21 37.10 0.23 1.17 16 25 O -0.38 -6.16 10.39 -35.23 -0.37 -6.53 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.10 1.96 5.41 -51.93 -0.28 1.68 16 31 H 0.28 7.52 8.72 -40.82 -0.36 7.16 16 32 H 0.10 2.22 7.43 -52.49 -0.39 1.83 16 33 H 0.11 1.90 8.06 -52.49 -0.42 1.48 16 34 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 35 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.11 1.71 7.96 -52.48 -0.42 1.29 16 37 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.05 0.87 7.39 -51.93 -0.38 0.49 16 LS Contribution 303.40 15.07 4.57 4.57 Total: -1.00 -30.65 303.40 -7.49 -38.15 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -5.17 Total: -0.50 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -2.38 Total: -8.55 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.25 Total: -36.65 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.33 Total: -21.82 kcal Atomic # 14 Polarization: 29.23 SS G_CDS: -4.43 Total: 24.80 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.65 -7.49 -38.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187496938.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.260 kcal (2) G-P(sol) polarization free energy of solvation -30.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds