Wall clock time and date at job start Mon Mar 30 2020 02:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.54622 * 2 1 4 4 C 1.53293 * 109.51426 * 120.12505 * 2 1 3 5 5 N 1.47148 * 108.38542 * 172.22744 * 4 2 1 6 6 C 1.34772 * 120.98080 * 129.44565 * 5 4 2 7 7 O 1.21687 * 120.00030 * 174.95174 * 6 5 4 8 8 C 1.46371 * 120.00073 * 354.94323 * 6 5 4 9 9 H 1.07997 * 120.00448 * 9.56350 * 8 6 5 10 10 C 1.40057 * 119.99792 * 189.56369 * 8 6 5 11 11 N 1.30678 * 119.99771 * 184.76022 * 10 8 6 12 12 Si 1.86797 * 120.00069 * 4.76307 * 10 8 6 13 13 H 1.48503 * 109.46727 * 179.97438 * 12 10 8 14 14 H 1.48499 * 109.46958 * 299.99864 * 12 10 8 15 15 H 1.48498 * 109.47142 * 60.00035 * 12 10 8 16 16 C 1.47153 * 118.03470 * 309.71546 * 5 4 2 17 17 H 1.09000 * 109.68505 * 290.56237 * 16 5 4 18 18 C 1.50700 * 109.68005 * 170.00478 * 16 5 4 19 19 C 1.38231 * 120.00233 * 304.70934 * 18 16 5 20 20 C 1.38236 * 119.99737 * 179.74077 * 19 18 16 21 21 C 1.38231 * 120.00315 * 0.53291 * 20 19 18 22 22 C 1.38238 * 119.99650 * 359.74357 * 21 20 19 23 23 C 1.38225 * 120.00076 * 359.97438 * 22 21 20 24 24 C 1.52882 * 108.60492 * 50.23106 * 16 5 4 25 25 O 1.42959 * 109.51315 * 239.87243 * 2 1 3 26 26 H 1.08994 * 109.47054 * 299.87279 * 1 2 3 27 27 H 1.09001 * 109.47053 * 59.87812 * 1 2 3 28 28 H 1.09008 * 109.46763 * 179.87474 * 1 2 3 29 29 H 1.09001 * 109.67993 * 52.50394 * 4 2 1 30 30 H 1.09001 * 109.71280 * 291.97155 * 4 2 1 31 31 H 0.97004 * 119.99835 * 354.86723 * 11 10 8 32 32 H 1.07997 * 120.00245 * 0.02562 * 19 18 16 33 33 H 1.08001 * 119.99749 * 180.29983 * 20 19 18 34 34 H 1.08000 * 120.00227 * 179.76729 * 21 20 19 35 35 H 1.07998 * 119.99617 * 179.97438 * 22 21 20 36 36 H 1.08003 * 119.99941 * 179.97438 * 23 22 21 37 37 H 1.09000 * 109.57882 * 187.92751 * 24 16 5 38 38 H 1.08990 * 109.41453 * 67.84152 * 24 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 6 2.0422 -0.7252 1.2497 5 7 3.5013 -0.8761 1.1336 6 6 4.3194 -0.5033 2.1376 7 8 5.5143 -0.7200 2.0611 8 6 3.7706 0.1624 3.3200 9 1 2.7013 0.2176 3.4612 10 6 4.6322 0.7280 4.2683 11 7 4.1473 1.2398 5.3686 12 14 6.4745 0.7507 3.9603 13 1 7.1599 1.4003 5.1064 14 1 6.9687 -0.6417 3.8118 15 1 6.7592 1.5123 2.7177 16 6 4.0411 -1.4405 -0.1136 17 1 3.7796 -2.4964 -0.1822 18 6 5.5400 -1.2857 -0.1336 19 6 6.1081 -0.0362 0.0294 20 6 7.4832 0.1049 0.0163 21 6 8.2898 -1.0019 -0.1708 22 6 7.7215 -2.2507 -0.3395 23 6 6.3467 -2.3927 -0.3206 24 6 3.4313 -0.6853 -1.2948 25 8 2.0076 -0.6763 -1.1654 26 1 -0.3633 0.5118 0.8911 27 1 -0.3633 0.5157 -0.8889 28 1 -0.3633 -1.0278 -0.0022 29 1 1.5759 -1.7079 1.3208 30 1 1.8031 -0.1404 2.1380 31 1 3.1872 1.2955 5.4955 32 1 5.4778 0.8292 0.1716 33 1 7.9272 1.0805 0.1486 34 1 9.3640 -0.8911 -0.1847 35 1 8.3517 -3.1154 -0.4861 36 1 5.9027 -3.3683 -0.4529 37 1 3.7091 -1.1786 -2.2263 38 1 3.8029 0.3393 -1.3004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187496938.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:38 Heat of formation + Delta-G solvation = -65.313278 kcal Electronic energy + Delta-G solvation = -22455.163144 eV Core-core repulsion = 19262.024085 eV Total energy + Delta-G solvation = -3193.139059 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.67153 -39.52094 -38.84915 -35.56900 -35.15868 -34.40921 -31.96623 -31.61805 -29.10146 -28.00824 -27.10198 -24.65230 -23.44501 -22.66119 -22.25139 -20.78026 -19.42390 -17.98519 -17.72429 -17.25065 -17.04519 -16.27582 -16.15426 -15.88477 -15.51762 -15.48364 -15.08813 -14.63792 -14.34476 -14.26341 -14.06829 -13.63931 -13.24317 -13.22470 -13.13168 -12.69522 -12.58125 -12.32855 -12.24162 -12.09411 -11.78199 -11.62413 -11.25237 -11.17115 -11.00019 -10.34300 -9.69823 -9.34650 -9.18007 -8.60004 -7.09612 0.62077 0.73358 1.41493 1.52901 1.92420 2.20468 2.28884 2.48031 2.70231 3.07372 3.31206 3.65147 3.80509 3.93855 4.03519 4.07307 4.17861 4.26607 4.30692 4.34738 4.49950 4.59358 4.63683 4.74583 4.77013 4.86294 4.92763 5.00198 5.17263 5.25999 5.30613 5.32360 5.55227 5.70290 5.73048 5.78353 5.85871 6.05312 6.08937 6.32829 6.65837 6.97161 7.98399 8.12481 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.013158 B = 0.011046 C = 0.006524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.446813 B = 2534.238654 C = 4290.842326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.074 3.926 3 H 0.050 0.950 4 C 0.091 3.909 5 N -0.635 5.635 6 C 0.550 3.450 7 O -0.592 6.592 8 C -0.613 4.613 9 H 0.071 0.929 10 C 0.034 3.966 11 N -0.855 5.855 12 Si 1.154 2.846 13 H -0.322 1.322 14 H -0.295 1.295 15 H -0.284 1.284 16 C 0.152 3.848 17 H 0.079 0.921 18 C -0.059 4.059 19 C -0.054 4.054 20 C -0.152 4.152 21 C -0.129 4.129 22 C -0.133 4.133 23 C -0.127 4.127 24 C 0.066 3.934 25 O -0.382 6.382 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.277 0.723 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.977 -3.757 -13.638 14.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.015 3.985 3 H 0.068 0.932 4 C -0.032 4.032 5 N -0.369 5.369 6 C 0.358 3.642 7 O -0.485 6.485 8 C -0.649 4.649 9 H 0.089 0.911 10 C -0.180 4.180 11 N -0.483 5.483 12 Si 0.986 3.014 13 H -0.254 1.254 14 H -0.223 1.223 15 H -0.211 1.211 16 C 0.049 3.951 17 H 0.097 0.903 18 C -0.059 4.059 19 C -0.073 4.073 20 C -0.170 4.170 21 C -0.147 4.147 22 C -0.151 4.151 23 C -0.145 4.145 24 C -0.011 4.011 25 O -0.301 6.301 26 H 0.102 0.898 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.133 0.867 34 H 0.155 0.845 35 H 0.160 0.840 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.218 -3.543 -13.123 13.595 hybrid contribution -1.703 -0.048 0.264 1.724 sum -1.921 -3.591 -12.859 13.488 Atomic orbital electron populations 1.21699 0.89968 1.03749 1.03662 1.22579 0.97031 0.94489 0.84355 0.93213 1.22361 0.80163 1.01058 0.99635 1.47922 1.06649 1.67064 1.15235 1.18309 0.85196 0.77845 0.82855 1.90348 1.16416 1.62028 1.79687 1.22310 0.95826 1.39738 1.07029 0.91056 1.27652 1.10782 0.89353 0.90254 1.70665 1.16892 1.37019 1.23763 0.82037 0.69894 0.76548 0.72939 1.25353 1.22292 1.21100 1.20644 0.90770 0.98135 0.85544 0.90315 1.19380 0.93617 0.94091 0.98856 1.20520 0.95137 0.96203 0.95432 1.21080 0.93643 0.99441 1.02815 1.21231 1.00140 0.92686 1.00621 1.21197 0.94661 0.97773 1.01473 1.20997 0.94251 0.97462 1.01816 1.22927 0.80589 0.99703 0.97901 1.87889 1.20888 1.77652 1.43633 0.89825 0.90523 0.91035 0.91428 0.89486 0.91208 0.89976 0.86700 0.84458 0.84028 0.85262 0.85354 0.93585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 9.57 71.99 0.69 -2.20 16 2 C 0.07 2.18 3.40 30.70 0.10 2.29 16 3 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 4 C 0.09 3.21 5.85 86.35 0.50 3.71 16 5 N -0.63 -26.46 3.01 -803.51 -2.42 -28.88 16 6 C 0.55 27.93 6.57 86.36 0.57 28.50 16 7 O -0.59 -31.38 7.26 -4.31 -0.03 -31.41 16 8 C -0.61 -33.59 9.27 24.83 0.23 -33.36 16 9 H 0.07 3.86 5.96 -2.91 -0.02 3.84 16 10 C 0.03 1.92 5.52 85.31 0.47 2.39 16 11 N -0.85 -49.16 13.65 21.84 0.30 -48.86 16 12 Si 1.15 60.34 26.07 68.60 1.79 62.13 16 13 H -0.32 -16.40 7.11 99.48 0.71 -15.69 16 14 H -0.29 -16.22 6.72 99.48 0.67 -15.55 16 15 H -0.28 -14.48 7.11 99.48 0.71 -13.77 16 16 C 0.15 5.39 3.26 44.08 0.14 5.53 16 17 H 0.08 2.62 7.90 -2.39 -0.02 2.61 16 18 C -0.06 -2.21 3.05 -19.87 -0.06 -2.27 16 19 C -0.05 -2.19 5.81 22.27 0.13 -2.06 16 20 C -0.15 -5.66 10.03 22.27 0.22 -5.44 16 21 C -0.13 -4.17 10.05 22.27 0.22 -3.95 16 22 C -0.13 -4.12 10.05 22.27 0.22 -3.90 16 23 C -0.13 -4.24 9.67 22.27 0.22 -4.03 16 24 C 0.07 1.96 6.21 71.94 0.45 2.41 16 25 O -0.38 -11.41 10.39 -148.98 -1.55 -12.96 16 26 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 29 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.09 3.34 5.41 -2.39 -0.01 3.33 16 31 H 0.28 15.35 8.72 -92.71 -0.81 14.54 16 32 H 0.08 3.59 7.43 -2.91 -0.02 3.57 16 33 H 0.11 3.98 8.06 -2.91 -0.02 3.96 16 34 H 0.14 3.56 8.06 -2.91 -0.02 3.53 16 35 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 36 H 0.13 3.68 7.96 -2.91 -0.02 3.65 16 37 H 0.13 3.03 8.14 -2.39 -0.02 3.01 16 38 H 0.05 1.45 7.39 -2.39 -0.02 1.43 16 Total: -1.00 -65.45 303.40 3.18 -62.28 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 0.98 Total: 10.09 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: 4.11 Total: -12.38 kcal Atomic # 7 Polarization: -75.62 SS G_CDS: -2.12 Total: -77.74 kcal Atomic # 8 Polarization: -42.80 SS G_CDS: -1.58 Total: -44.37 kcal Atomic # 14 Polarization: 60.34 SS G_CDS: 1.79 Total: 62.13 kcal Total: -65.45 3.18 -62.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187496938.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.038 kcal (2) G-P(sol) polarization free energy of solvation -65.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds