Wall clock time and date at job start Mon Mar 30 2020 02:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.51116 * 2 1 4 4 C 1.53302 * 109.51160 * 120.10065 * 2 1 3 5 5 N 1.47143 * 108.38370 * 67.67345 * 4 2 1 6 6 C 1.34780 * 120.98272 * 230.55586 * 5 4 2 7 7 O 1.21690 * 120.00423 * 185.38052 * 6 5 4 8 8 C 1.46370 * 119.99848 * 5.37773 * 6 5 4 9 9 H 1.08005 * 119.99958 * 9.52924 * 8 6 5 10 10 C 1.40050 * 120.00317 * 189.52758 * 8 6 5 11 11 N 1.30678 * 119.99728 * 359.97438 * 10 8 6 12 12 Si 1.86801 * 120.00382 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46942 * 59.99783 * 12 10 8 14 14 H 1.48500 * 109.47143 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47135 * 300.00014 * 12 10 8 16 16 C 1.47152 * 118.03820 * 50.53832 * 5 4 2 17 17 H 1.08998 * 109.71736 * 69.20455 * 16 5 4 18 18 C 1.50706 * 109.68280 * 189.74157 * 16 5 4 19 19 C 1.38230 * 120.00090 * 54.70832 * 18 16 5 20 20 C 1.38239 * 120.00042 * 179.79285 * 19 18 16 21 21 C 1.38234 * 119.99500 * 0.43648 * 20 19 18 22 22 C 1.38234 * 120.00614 * 359.81393 * 21 20 19 23 23 C 1.38231 * 119.99865 * 234.98188 * 18 16 5 24 24 C 1.53302 * 108.38030 * 309.46025 * 16 5 4 25 25 O 1.42950 * 109.51435 * 239.89942 * 2 1 3 26 26 H 1.09002 * 109.47739 * 299.89788 * 1 2 3 27 27 H 1.08999 * 109.47480 * 59.90280 * 1 2 3 28 28 H 1.09005 * 109.47061 * 179.89789 * 1 2 3 29 29 H 1.08999 * 109.67703 * 307.94970 * 4 2 1 30 30 H 1.08995 * 109.70715 * 187.41936 * 4 2 1 31 31 H 0.97004 * 119.99774 * 179.97438 * 11 10 8 32 32 H 1.08001 * 120.00147 * 359.97438 * 19 18 16 33 33 H 1.07994 * 120.00296 * 180.27066 * 20 19 18 34 34 H 1.08007 * 119.99628 * 179.83714 * 21 20 19 35 35 H 1.07994 * 120.00480 * 180.02562 * 22 21 20 36 36 H 1.08004 * 119.99872 * 359.97438 * 23 18 16 37 37 H 1.09008 * 109.50866 * 172.22794 * 24 16 5 38 38 H 1.08997 * 109.51149 * 292.32660 * 24 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0420 -0.7247 1.2501 5 7 1.6970 -2.1504 1.1340 6 6 1.0719 -2.7969 2.1379 7 8 0.8825 -3.9967 2.0642 8 6 0.6209 -2.0559 3.3168 9 1 0.6479 -0.9762 3.3190 10 6 0.1543 -2.7469 4.4421 11 7 0.1211 -4.0533 4.4393 12 14 -0.4220 -1.8012 5.9465 13 1 -1.5559 -0.9185 5.5718 14 1 -0.8645 -2.7575 6.9928 15 1 0.6957 -0.9758 6.4704 16 6 2.0543 -2.8494 -0.1106 17 1 3.1374 -2.9527 -0.1765 18 6 1.4124 -4.2128 -0.1293 19 6 0.0464 -4.3361 0.0425 20 6 -0.5429 -5.5864 0.0211 21 6 0.2352 -6.7140 -0.1631 22 6 1.6019 -6.5912 -0.3297 23 6 2.1905 -5.3405 -0.3125 24 6 1.5416 -2.0212 -1.2944 25 8 2.0075 -0.6757 -1.1657 26 1 -0.3635 0.5122 0.8909 27 1 -0.3634 0.5153 -0.8891 28 1 -0.3633 -1.0277 -0.0018 29 1 1.5697 -0.3037 2.1377 30 1 3.1239 -0.6134 1.3223 31 1 -0.2018 -4.5319 5.2188 32 1 -0.5609 -3.4553 0.1905 33 1 -1.6107 -5.6824 0.1509 34 1 -0.2249 -7.6911 -0.1772 35 1 2.2097 -7.4721 -0.4740 36 1 3.2584 -5.2445 -0.4427 37 1 1.9141 -2.4480 -2.2257 38 1 0.4517 -2.0301 -1.3001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187496973.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:43 Heat of formation + Delta-G solvation = -47.100654 kcal Electronic energy + Delta-G solvation = -22572.179695 eV Core-core repulsion = 19379.830394 eV Total energy + Delta-G solvation = -3192.349301 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.52581 -39.47635 -38.39713 -35.28173 -34.60639 -33.97175 -31.55678 -31.52055 -29.14942 -28.27435 -26.87798 -25.04637 -23.35616 -22.58627 -21.84796 -20.20947 -18.67261 -17.82752 -17.61514 -17.10440 -16.65594 -16.29670 -16.08893 -15.95601 -15.47162 -15.04320 -14.89408 -14.40265 -14.10152 -13.95690 -13.91679 -13.44301 -13.18384 -13.05643 -12.89647 -12.62496 -12.58428 -12.35314 -12.14463 -12.05886 -11.73905 -11.70569 -11.35498 -10.96715 -10.81944 -10.21636 -9.59625 -8.89058 -8.64797 -8.05070 -6.74992 0.70934 0.81390 1.38677 1.40554 1.50611 2.21956 2.53199 2.64578 2.89470 3.17787 3.66785 3.80650 3.96518 4.03349 4.04211 4.19818 4.29282 4.32556 4.35918 4.42367 4.60147 4.63711 4.72815 4.80172 4.88942 4.95320 5.01204 5.05192 5.30796 5.32205 5.39375 5.40246 5.68713 5.78180 5.81881 5.91003 6.13511 6.19186 6.39654 6.40425 6.93882 7.45938 8.53921 8.72434 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.013942 B = 0.009568 C = 0.006322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.884879 B = 2925.661700 C = 4428.095492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.074 3.926 3 H 0.138 0.862 4 C 0.088 3.912 5 N -0.640 5.640 6 C 0.542 3.458 7 O -0.571 6.571 8 C -0.567 4.567 9 H 0.085 0.915 10 C 0.038 3.962 11 N -0.816 5.816 12 Si 0.981 3.019 13 H -0.258 1.258 14 H -0.280 1.280 15 H -0.256 1.256 16 C 0.153 3.847 17 H 0.066 0.934 18 C -0.052 4.052 19 C -0.039 4.039 20 C -0.151 4.151 21 C -0.132 4.132 22 C -0.137 4.137 23 C -0.136 4.136 24 C 0.064 3.936 25 O -0.381 6.381 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.035 0.965 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.270 0.730 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.132 0.868 35 H 0.137 0.863 36 H 0.124 0.876 37 H 0.118 0.882 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.497 5.054 -8.585 10.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.016 3.984 3 H 0.155 0.845 4 C -0.035 4.035 5 N -0.378 5.378 6 C 0.347 3.653 7 O -0.455 6.455 8 C -0.604 4.604 9 H 0.103 0.897 10 C -0.177 4.177 11 N -0.446 5.446 12 Si 0.802 3.198 13 H -0.182 1.182 14 H -0.205 1.205 15 H -0.180 1.180 16 C 0.049 3.951 17 H 0.084 0.916 18 C -0.053 4.053 19 C -0.058 4.058 20 C -0.169 4.169 21 C -0.150 4.150 22 C -0.155 4.155 23 C -0.154 4.154 24 C -0.013 4.013 25 O -0.300 6.300 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.054 0.946 29 H 0.114 0.886 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.129 0.871 34 H 0.150 0.850 35 H 0.155 0.845 36 H 0.142 0.858 37 H 0.136 0.864 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.482 4.339 -8.661 9.800 hybrid contribution -0.517 0.022 1.384 1.478 sum 0.965 4.361 -7.277 8.538 Atomic orbital electron populations 1.22256 0.96034 1.01577 1.03054 1.22766 0.94102 0.97093 0.84415 0.84471 1.22330 0.99818 0.81688 0.99708 1.48196 1.63733 1.10421 1.15429 1.18456 0.77382 0.86993 0.82423 1.90713 1.60501 1.15921 1.78379 1.21375 1.45526 0.94405 0.99054 0.89669 1.26715 0.93125 0.95385 1.02497 1.70151 1.35520 1.09303 1.29596 0.85310 0.79528 0.78417 0.76577 1.18183 1.20529 1.18027 1.20577 0.97850 0.90046 0.86633 0.91617 1.19408 0.93642 0.94253 0.97988 1.20405 0.94440 0.96487 0.94487 1.20987 0.99638 0.93238 1.03069 1.21127 0.94408 0.98178 1.01251 1.21114 0.95043 0.97245 1.02124 1.20947 0.99209 0.92511 1.02781 1.22936 0.98781 0.82133 0.97483 1.87922 1.72849 1.25186 1.44046 0.90920 0.90727 0.94634 0.88627 0.92201 0.92042 0.90203 0.87065 0.84970 0.84475 0.85844 0.86411 0.93087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.99 8.81 71.98 0.63 -4.35 16 2 C 0.07 2.13 3.92 30.69 0.12 2.25 16 3 H 0.14 3.00 8.14 -2.39 -0.02 2.98 16 4 C 0.09 3.09 5.94 86.36 0.51 3.61 16 5 N -0.64 -27.78 2.52 -802.71 -2.03 -29.81 16 6 C 0.54 29.18 6.72 86.36 0.58 29.76 16 7 O -0.57 -34.09 10.20 -4.32 -0.04 -34.14 16 8 C -0.57 -30.33 8.83 24.83 0.22 -30.11 16 9 H 0.09 4.11 5.77 -2.91 -0.02 4.09 16 10 C 0.04 2.05 5.50 85.30 0.47 2.52 16 11 N -0.82 -48.21 11.87 21.84 0.26 -47.95 16 12 Si 0.98 40.14 29.56 68.60 2.03 42.16 16 13 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 14 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 15 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 16 C 0.15 5.93 3.28 44.22 0.15 6.07 16 17 H 0.07 2.48 7.90 -2.39 -0.02 2.47 16 18 C -0.05 -2.19 3.08 -19.87 -0.06 -2.25 16 19 C -0.04 -1.76 5.79 22.27 0.13 -1.63 16 20 C -0.15 -6.32 10.03 22.27 0.22 -6.10 16 21 C -0.13 -4.91 10.05 22.27 0.22 -4.69 16 22 C -0.14 -4.96 10.05 22.27 0.22 -4.73 16 23 C -0.14 -5.25 9.67 22.27 0.22 -5.04 16 24 C 0.06 2.05 5.84 72.08 0.42 2.47 16 25 O -0.38 -11.76 10.58 -148.98 -1.58 -13.34 16 26 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.03 1.25 6.11 -2.38 -0.01 1.24 16 29 H 0.10 3.46 5.41 -2.39 -0.01 3.44 16 30 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.27 14.79 8.29 -92.71 -0.77 14.02 16 32 H 0.08 3.81 7.43 -2.91 -0.02 3.79 16 33 H 0.11 4.32 8.06 -2.91 -0.02 4.29 16 34 H 0.13 4.08 8.06 -2.91 -0.02 4.05 16 35 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 36 H 0.12 4.18 7.96 -2.91 -0.02 4.16 16 37 H 0.12 3.16 8.14 -2.38 -0.02 3.15 16 38 H 0.05 1.71 5.56 -2.39 -0.01 1.70 16 Total: -1.00 -69.05 302.89 3.76 -65.29 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: 1.06 Total: 30.01 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: 4.06 Total: -12.23 kcal Atomic # 7 Polarization: -76.00 SS G_CDS: -1.77 Total: -77.76 kcal Atomic # 8 Polarization: -45.85 SS G_CDS: -1.62 Total: -47.47 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.16 kcal Total: -69.05 3.76 -65.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187496973.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.190 kcal (2) G-P(sol) polarization free energy of solvation -69.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds