Wall clock time and date at job start Mon Mar 30 2020 02:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.43103 * 2 1 4 4 C 1.55238 * 109.39615 * 240.12062 * 2 1 3 5 5 C 1.45114 * 110.05963 * 167.70536 * 4 2 1 6 6 N 1.47014 * 115.49630 * 63.43977 * 5 4 2 7 7 C 1.46898 * 110.99593 * 143.21498 * 6 5 4 8 8 C 1.53000 * 109.47061 * 189.99595 * 7 6 5 9 9 C 1.53002 * 109.47438 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47023 * 180.02562 * 9 8 7 11 11 H 1.07998 * 120.00040 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99679 * 179.97438 * 10 9 8 13 13 N 1.31522 * 119.99960 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00111 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47031 * 90.00485 * 14 12 10 16 16 H 1.48500 * 109.47280 * 209.99900 * 14 12 10 17 17 H 1.48492 * 109.47321 * 329.99930 * 14 12 10 18 18 C 1.45391 * 105.27744 * 263.43909 * 6 5 4 19 19 C 1.54637 * 108.89186 * 107.59179 * 18 6 5 20 20 S 1.79281 * 109.43428 * 119.90463 * 2 1 3 21 21 O 1.42105 * 107.92776 * 92.09467 * 20 2 1 22 22 O 1.42096 * 107.84514 * 322.80272 * 20 2 1 23 23 H 1.08994 * 109.47808 * 300.09025 * 1 2 3 24 24 H 1.09002 * 109.47377 * 60.09636 * 1 2 3 25 25 H 1.08997 * 109.47065 * 180.08783 * 1 2 3 26 26 H 1.08998 * 109.37518 * 287.88807 * 4 2 1 27 27 H 1.09005 * 109.37371 * 47.64612 * 4 2 1 28 28 H 1.09005 * 108.27241 * 185.00098 * 5 4 2 29 29 H 1.08996 * 108.28052 * 301.87425 * 5 4 2 30 30 H 1.08995 * 109.47732 * 309.99883 * 7 6 5 31 31 H 1.08998 * 109.47287 * 70.00169 * 7 6 5 32 32 H 1.09009 * 109.47277 * 300.00720 * 8 7 6 33 33 H 1.09000 * 109.47107 * 60.00070 * 8 7 6 34 34 H 1.08996 * 109.46931 * 299.99997 * 9 8 7 35 35 H 1.08998 * 109.47270 * 60.00353 * 9 8 7 36 36 H 0.96998 * 120.00055 * 179.97438 * 13 12 10 37 37 H 1.09003 * 109.59834 * 347.74513 * 18 6 5 38 38 H 1.09003 * 109.52711 * 227.39613 * 18 6 5 39 39 H 1.09002 * 109.22396 * 200.67094 * 19 18 6 40 40 H 1.08997 * 109.22178 * 81.27783 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8926 1.0280 0.0000 4 6 2.0455 -0.7295 -1.2696 5 6 3.4671 -0.4913 -1.4378 6 7 4.3278 -1.0189 -0.3691 7 6 5.5921 -1.5297 -0.9156 8 6 6.3491 -2.2897 0.1754 9 6 7.6663 -2.8212 -0.3934 10 6 8.4115 -3.5703 0.6811 11 1 7.9880 -3.6587 1.6706 12 6 9.6337 -4.1436 0.4005 13 7 10.2839 -4.7977 1.3381 14 14 10.3653 -3.9924 -1.3116 15 1 11.2019 -2.7678 -1.3860 16 1 11.2047 -5.1834 -1.5981 17 1 9.2710 -3.9059 -2.3116 18 6 4.5614 0.1042 0.5242 19 6 3.7602 -0.1181 1.8280 20 16 2.1265 -0.8429 1.4656 21 8 2.3186 -2.2116 1.1353 22 8 1.2553 -0.5175 2.5400 23 1 -0.3634 0.5152 0.8891 24 1 -0.3634 0.5123 -0.8908 25 1 -0.3633 -1.0276 0.0016 26 1 1.8677 -1.8001 -1.1688 27 1 1.5121 -0.3551 -2.1435 28 1 3.7794 -0.9396 -2.3810 29 1 3.6277 0.5845 -1.5064 30 1 5.3831 -2.2015 -1.7480 31 1 6.2000 -0.6955 -1.2657 32 1 6.5582 -1.6178 1.0080 33 1 5.7413 -3.1239 0.5257 34 1 7.4575 -3.4930 -1.2260 35 1 8.2740 -1.9868 -0.7433 36 1 11.1435 -5.2013 1.1406 37 1 4.2317 1.0266 0.0458 38 1 5.6245 0.1707 0.7556 39 1 3.6245 0.8382 2.3333 40 1 4.3155 -0.7926 2.4797 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191718560.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:36 Heat of formation + Delta-G solvation = -65.544387 kcal Electronic energy + Delta-G solvation = -20415.294741 eV Core-core repulsion = 17357.589612 eV Total energy + Delta-G solvation = -3057.705130 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.32284 -36.70638 -35.90356 -35.42454 -33.75046 -31.91989 -31.26695 -29.39590 -26.53681 -24.01186 -23.39974 -22.29979 -20.94207 -19.98425 -18.47995 -17.40949 -16.85417 -16.29952 -15.74420 -15.56676 -15.02389 -14.68632 -14.26715 -14.13455 -13.89473 -13.66828 -13.18898 -13.04653 -12.64903 -12.47213 -12.16436 -11.96748 -11.85245 -11.81501 -11.62658 -11.50213 -11.28626 -10.99299 -10.81791 -10.72805 -10.48473 -10.24881 -9.94361 -9.74782 -9.59179 -9.16679 -8.62552 -8.52307 -6.02281 -4.00095 0.08879 2.91973 3.30072 3.37988 3.41121 3.66605 3.74402 3.85017 4.34300 4.35327 4.45972 4.65568 4.73345 4.74171 5.00766 5.06101 5.19663 5.31200 5.32097 5.38575 5.44454 5.48990 5.59266 5.65805 5.68520 5.73107 5.75558 5.97133 6.08701 6.46481 6.50306 6.80626 6.96121 7.03108 7.35876 7.45977 7.81439 8.56979 9.03793 9.60030 11.11376 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.033866 B = 0.004264 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.594471 B = 6565.496837 C = 6995.995122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.592 4.592 3 H 0.127 0.873 4 C -0.089 4.089 5 C 0.018 3.982 6 N -0.525 5.525 7 C 0.055 3.945 8 C -0.102 4.102 9 C -0.013 4.013 10 C -0.518 4.518 11 H 0.072 0.928 12 C 0.065 3.935 13 N -0.904 5.904 14 Si 0.881 3.119 15 H -0.279 1.279 16 H -0.288 1.288 17 H -0.266 1.266 18 C 0.048 3.952 19 C -0.596 4.596 20 S 2.440 3.560 21 O -0.912 6.912 22 O -0.962 6.962 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.037 0.963 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.016 0.984 35 H 0.008 0.992 36 H 0.262 0.738 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.124 0.876 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.931 14.505 -6.156 23.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.700 4.700 3 H 0.145 0.855 4 C -0.128 4.128 5 C -0.109 4.109 6 N -0.249 5.249 7 C -0.071 4.071 8 C -0.140 4.140 9 C -0.051 4.051 10 C -0.556 4.556 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.543 5.543 14 Si 0.708 3.292 15 H -0.205 1.205 16 H -0.214 1.214 17 H -0.190 1.190 18 C -0.082 4.082 19 C -0.726 4.726 20 S 2.620 3.380 21 O -0.909 6.909 22 O -0.959 6.959 23 H 0.094 0.906 24 H 0.094 0.906 25 H 0.086 0.914 26 H 0.116 0.884 27 H 0.106 0.894 28 H 0.096 0.904 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.035 0.965 35 H 0.026 0.974 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.142 0.858 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -18.424 13.340 -5.420 23.383 hybrid contribution 1.433 1.397 -1.560 2.538 sum -16.991 14.738 -6.981 23.550 Atomic orbital electron populations 1.21518 0.89869 1.03664 1.04106 1.30457 1.06872 1.13510 1.19206 0.85462 1.20338 0.95141 1.02458 0.94841 1.21218 0.94272 0.99019 0.96423 1.63195 1.16964 1.28896 1.15847 1.22510 0.87338 0.98290 0.98979 1.21522 0.96820 0.99341 0.96267 1.19552 0.92594 0.95765 0.97172 1.21143 1.03389 1.33012 0.98102 0.90981 1.25044 0.96907 0.94792 0.96844 1.69921 1.15134 1.36154 1.33125 0.86766 0.79292 0.77556 0.85557 1.20453 1.21412 1.19043 1.22397 1.01893 0.92692 0.91179 1.30752 1.21654 1.13253 1.06916 1.07518 0.77077 0.77273 0.76159 1.93569 1.85081 1.28818 1.83446 1.93526 1.64007 1.85743 1.52617 0.90574 0.90613 0.91397 0.88411 0.89438 0.90353 0.93217 0.90446 0.94450 0.92937 0.91210 0.96531 0.97366 0.92780 0.91529 0.89091 0.85757 0.84276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.03 8.87 37.16 0.33 -0.70 16 2 C -0.59 -4.95 2.58 -25.55 -0.07 -5.01 16 3 H 0.13 0.72 7.80 -51.76 -0.40 0.31 16 4 C -0.09 -0.77 4.87 -29.25 -0.14 -0.91 16 5 C 0.02 0.17 4.75 -7.46 -0.04 0.14 16 6 N -0.52 -6.65 3.29 -239.38 -0.79 -7.44 16 7 C 0.06 0.83 4.56 -3.82 -0.02 0.81 16 8 C -0.10 -1.98 5.21 -26.73 -0.14 -2.12 16 9 C -0.01 -0.30 4.04 -27.88 -0.11 -0.42 16 10 C -0.52 -14.89 9.66 -34.44 -0.33 -15.23 16 11 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 12 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 13 N -0.90 -28.16 13.96 55.43 0.77 -27.39 16 14 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 17 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 18 C 0.05 0.51 4.99 -3.78 -0.02 0.49 16 19 C -0.60 -6.22 6.72 38.02 0.26 -5.97 16 20 S 2.44 29.41 4.50 -107.50 -0.48 28.93 16 21 O -0.91 -14.77 15.90 -57.92 -0.92 -15.69 16 22 O -0.96 -14.07 17.18 -57.92 -1.00 -15.06 16 23 H 0.08 0.59 7.72 -51.93 -0.40 0.19 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.10 1.02 7.23 -51.93 -0.38 0.64 16 27 H 0.09 0.55 8.10 -51.93 -0.42 0.13 16 28 H 0.08 0.71 7.37 -51.93 -0.38 0.32 16 29 H 0.05 0.36 6.49 -51.93 -0.34 0.03 16 30 H 0.08 1.13 7.77 -51.93 -0.40 0.73 16 31 H 0.04 0.51 8.00 -51.93 -0.42 0.09 16 32 H 0.05 1.00 6.99 -51.92 -0.36 0.64 16 33 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 35 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.07 0.49 6.26 -51.93 -0.32 0.17 16 38 H 0.09 1.05 6.53 -51.93 -0.34 0.71 16 39 H 0.12 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.14 1.61 8.14 -51.93 -0.42 1.18 16 LS Contribution 316.82 15.07 4.77 4.77 Total: -1.00 -35.73 316.82 -9.32 -45.05 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -6.63 Total: -3.10 kcal Atomic # 6 Polarization: -26.73 SS G_CDS: -0.38 Total: -27.11 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: -0.01 Total: -34.83 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -1.92 Total: -30.75 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Atomic # 16 Polarization: 29.41 SS G_CDS: -0.48 Total: 28.93 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -35.73 -9.32 -45.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191718560.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.498 kcal (2) G-P(sol) polarization free energy of solvation -35.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds