Wall clock time and date at job start Mon Mar 30 2020 02:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.43103 * 2 1 4 4 C 1.55238 * 109.39615 * 240.12062 * 2 1 3 5 5 C 1.45114 * 110.05963 * 167.70536 * 4 2 1 6 6 N 1.47014 * 115.49630 * 63.43977 * 5 4 2 7 7 C 1.46898 * 110.99593 * 143.21498 * 6 5 4 8 8 C 1.53000 * 109.47061 * 189.99595 * 7 6 5 9 9 C 1.53002 * 109.47438 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47023 * 180.02562 * 9 8 7 11 11 H 1.07998 * 120.00040 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99679 * 179.97438 * 10 9 8 13 13 N 1.31522 * 119.99960 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00111 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47031 * 90.00485 * 14 12 10 16 16 H 1.48500 * 109.47280 * 209.99900 * 14 12 10 17 17 H 1.48492 * 109.47321 * 329.99930 * 14 12 10 18 18 C 1.45391 * 105.27744 * 263.43909 * 6 5 4 19 19 C 1.54637 * 108.89186 * 107.59179 * 18 6 5 20 20 S 1.79281 * 109.43428 * 119.90463 * 2 1 3 21 21 O 1.42105 * 107.92776 * 92.09467 * 20 2 1 22 22 O 1.42096 * 107.84514 * 322.80272 * 20 2 1 23 23 H 1.08994 * 109.47808 * 300.09025 * 1 2 3 24 24 H 1.09002 * 109.47377 * 60.09636 * 1 2 3 25 25 H 1.08997 * 109.47065 * 180.08783 * 1 2 3 26 26 H 1.08998 * 109.37518 * 287.88807 * 4 2 1 27 27 H 1.09005 * 109.37371 * 47.64612 * 4 2 1 28 28 H 1.09005 * 108.27241 * 185.00098 * 5 4 2 29 29 H 1.08996 * 108.28052 * 301.87425 * 5 4 2 30 30 H 1.08995 * 109.47732 * 309.99883 * 7 6 5 31 31 H 1.08998 * 109.47287 * 70.00169 * 7 6 5 32 32 H 1.09009 * 109.47277 * 300.00720 * 8 7 6 33 33 H 1.09000 * 109.47107 * 60.00070 * 8 7 6 34 34 H 1.08996 * 109.46931 * 299.99997 * 9 8 7 35 35 H 1.08998 * 109.47270 * 60.00353 * 9 8 7 36 36 H 0.96998 * 120.00055 * 179.97438 * 13 12 10 37 37 H 1.09003 * 109.59834 * 347.74513 * 18 6 5 38 38 H 1.09003 * 109.52711 * 227.39613 * 18 6 5 39 39 H 1.09002 * 109.22396 * 200.67094 * 19 18 6 40 40 H 1.08997 * 109.22178 * 81.27783 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8926 1.0280 0.0000 4 6 2.0455 -0.7295 -1.2696 5 6 3.4671 -0.4913 -1.4378 6 7 4.3278 -1.0189 -0.3691 7 6 5.5921 -1.5297 -0.9156 8 6 6.3491 -2.2897 0.1754 9 6 7.6663 -2.8212 -0.3934 10 6 8.4115 -3.5703 0.6811 11 1 7.9880 -3.6587 1.6706 12 6 9.6337 -4.1436 0.4005 13 7 10.2839 -4.7977 1.3381 14 14 10.3653 -3.9924 -1.3116 15 1 11.2019 -2.7678 -1.3860 16 1 11.2047 -5.1834 -1.5981 17 1 9.2710 -3.9059 -2.3116 18 6 4.5614 0.1042 0.5242 19 6 3.7602 -0.1181 1.8280 20 16 2.1265 -0.8429 1.4656 21 8 2.3186 -2.2116 1.1353 22 8 1.2553 -0.5175 2.5400 23 1 -0.3634 0.5152 0.8891 24 1 -0.3634 0.5123 -0.8908 25 1 -0.3633 -1.0276 0.0016 26 1 1.8677 -1.8001 -1.1688 27 1 1.5121 -0.3551 -2.1435 28 1 3.7794 -0.9396 -2.3810 29 1 3.6277 0.5845 -1.5064 30 1 5.3831 -2.2015 -1.7480 31 1 6.2000 -0.6955 -1.2657 32 1 6.5582 -1.6178 1.0080 33 1 5.7413 -3.1239 0.5257 34 1 7.4575 -3.4930 -1.2260 35 1 8.2740 -1.9868 -0.7433 36 1 11.1435 -5.2013 1.1406 37 1 4.2317 1.0266 0.0458 38 1 5.6245 0.1707 0.7556 39 1 3.6245 0.8382 2.3333 40 1 4.3155 -0.7926 2.4797 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191718560.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:35 Heat of formation + Delta-G solvation = -92.876776 kcal Electronic energy + Delta-G solvation = -20416.479963 eV Core-core repulsion = 17357.589612 eV Total energy + Delta-G solvation = -3058.890351 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.17889 -37.73380 -36.91518 -36.47765 -35.37314 -33.69555 -32.14242 -30.51911 -28.06609 -24.82245 -24.57229 -23.45871 -21.79228 -21.62420 -19.39143 -18.91463 -18.22181 -17.37589 -16.67838 -16.50854 -16.31079 -16.00942 -15.56529 -15.11469 -14.87973 -14.69654 -14.44698 -14.15283 -13.88176 -13.61121 -13.40814 -13.10996 -12.97248 -12.78527 -12.68822 -12.60988 -12.46045 -12.25639 -12.10173 -11.79151 -11.61498 -11.45695 -11.41753 -11.29300 -11.16963 -11.01705 -10.75193 -9.49155 -8.28391 -6.33272 -0.79312 1.36164 1.39928 1.51921 2.07999 2.37712 2.82163 2.87775 3.06935 3.10485 3.58848 3.68513 3.88965 3.93049 4.03071 4.24322 4.30249 4.37918 4.53558 4.59985 4.67676 4.70767 4.76422 4.79997 4.86130 4.89776 4.93021 5.02794 5.05611 5.11149 5.20470 5.33001 5.55235 5.62476 5.68788 6.01423 6.07900 6.31314 6.75655 7.31282 8.89107 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.033866 B = 0.004264 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.594471 B = 6565.496837 C = 6995.995122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.564 4.564 3 H 0.171 0.829 4 C -0.090 4.090 5 C 0.012 3.988 6 N -0.552 5.552 7 C 0.068 3.932 8 C -0.095 4.095 9 C -0.009 4.009 10 C -0.536 4.536 11 H 0.023 0.977 12 C -0.002 4.002 13 N -0.956 5.956 14 Si 0.959 3.041 15 H -0.263 1.263 16 H -0.287 1.287 17 H -0.242 1.242 18 C 0.042 3.958 19 C -0.590 4.590 20 S 2.420 3.580 21 O -0.971 6.971 22 O -1.001 7.001 23 H 0.073 0.927 24 H 0.108 0.892 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.125 0.875 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.037 0.963 34 H 0.021 0.979 35 H 0.026 0.974 36 H 0.266 0.734 37 H 0.114 0.886 38 H 0.080 0.920 39 H 0.159 0.841 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.555 17.873 -9.784 27.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.676 4.676 3 H 0.188 0.812 4 C -0.129 4.129 5 C -0.115 4.115 6 N -0.277 5.277 7 C -0.059 4.059 8 C -0.133 4.133 9 C -0.047 4.047 10 C -0.574 4.574 11 H 0.041 0.959 12 C -0.198 4.198 13 N -0.597 5.597 14 Si 0.781 3.219 15 H -0.187 1.187 16 H -0.212 1.212 17 H -0.165 1.165 18 C -0.087 4.087 19 C -0.722 4.722 20 S 2.608 3.392 21 O -0.968 6.968 22 O -0.998 6.998 23 H 0.092 0.908 24 H 0.127 0.873 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.143 0.857 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.039 0.961 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.132 0.868 38 H 0.098 0.902 39 H 0.177 0.823 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -19.077 16.691 -9.007 26.901 hybrid contribution 1.569 0.355 -0.330 1.642 sum -17.509 17.046 -9.336 26.159 Atomic orbital electron populations 1.21660 0.89280 1.03498 1.05571 1.30194 1.07190 1.14770 1.15480 0.81159 1.20433 0.95374 1.01132 0.95927 1.21362 0.93672 1.01100 0.95369 1.63012 1.16232 1.30825 1.17621 1.22208 0.88377 0.98598 0.96704 1.21346 0.95306 0.98801 0.97897 1.19492 0.94011 0.95705 0.95500 1.21547 1.04158 1.33920 0.97752 0.95889 1.26143 0.97351 0.94129 1.02139 1.70100 1.15881 1.37629 1.36096 0.85536 0.78896 0.78042 0.79396 1.18747 1.21250 1.16541 1.22602 1.01362 0.93897 0.90864 1.30671 1.19807 1.14235 1.07464 1.07686 0.77370 0.76979 0.77193 1.93506 1.85919 1.32893 1.84486 1.93470 1.65130 1.86056 1.55170 0.90834 0.87350 0.92581 0.91143 0.85734 0.89730 0.89531 0.90168 0.92205 0.93445 0.94373 0.96090 0.95581 0.92542 0.86849 0.90184 0.82326 0.86619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.87 71.98 0.64 -1.14 16 2 C -0.56 -7.42 2.58 31.36 0.08 -7.34 16 3 H 0.17 0.83 7.80 -2.49 -0.02 0.81 16 4 C -0.09 -1.21 4.87 28.97 0.14 -1.06 16 5 C 0.01 0.17 4.75 83.88 0.40 0.57 16 6 N -0.55 -12.77 3.29 -911.26 -2.99 -15.76 16 7 C 0.07 1.89 4.56 86.30 0.39 2.29 16 8 C -0.10 -3.78 5.21 30.60 0.16 -3.62 16 9 C -0.01 -0.43 4.04 29.85 0.12 -0.31 16 10 C -0.54 -31.94 9.66 25.60 0.25 -31.69 16 11 H 0.02 1.53 7.99 -2.91 -0.02 1.50 16 12 C 0.00 -0.10 5.47 84.65 0.46 0.37 16 13 N -0.96 -61.63 13.96 21.45 0.30 -61.33 16 14 Si 0.96 44.32 27.47 68.60 1.88 46.20 16 15 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 16 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 17 H -0.24 -10.20 6.54 99.48 0.65 -9.55 16 18 C 0.04 0.76 4.99 87.15 0.43 1.20 16 19 C -0.59 -11.72 6.72 72.54 0.49 -11.23 16 20 S 2.42 58.10 4.50 -56.49 -0.25 57.85 16 21 O -0.97 -33.40 15.90 -127.29 -2.02 -35.42 16 22 O -1.00 -30.00 17.18 -127.29 -2.19 -32.19 16 23 H 0.07 0.99 7.72 -2.39 -0.02 0.97 16 24 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.06 0.83 8.14 -2.39 -0.02 0.82 16 26 H 0.07 1.38 7.23 -2.39 -0.02 1.37 16 27 H 0.12 0.85 8.10 -2.38 -0.02 0.83 16 28 H 0.08 1.15 7.37 -2.38 -0.02 1.13 16 29 H 0.09 0.64 6.49 -2.39 -0.02 0.63 16 30 H 0.08 2.16 7.77 -2.39 -0.02 2.14 16 31 H 0.06 1.40 8.00 -2.39 -0.02 1.38 16 32 H 0.05 1.87 6.99 -2.38 -0.02 1.86 16 33 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.02 0.95 7.20 -2.39 -0.02 0.94 16 35 H 0.03 1.13 7.57 -2.39 -0.02 1.11 16 36 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 37 H 0.11 0.98 6.26 -2.39 -0.01 0.96 16 38 H 0.08 1.66 6.53 -2.39 -0.02 1.65 16 39 H 0.16 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 Total: -1.00 -84.20 316.82 -0.76 -84.96 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: 0.95 Total: 7.67 kcal Atomic # 6 Polarization: -55.54 SS G_CDS: 3.57 Total: -51.97 kcal Atomic # 7 Polarization: -74.40 SS G_CDS: -2.70 Total: -77.09 kcal Atomic # 8 Polarization: -63.40 SS G_CDS: -4.21 Total: -67.61 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.88 Total: 46.20 kcal Atomic # 16 Polarization: 58.10 SS G_CDS: -0.25 Total: 57.85 kcal Total: -84.20 -0.76 -84.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191718560.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.917 kcal (2) G-P(sol) polarization free energy of solvation -84.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds