Wall clock time and date at job start Mon Mar 30 2020 02:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.51067 * 2 1 4 4 C 1.53102 * 109.50660 * 239.91580 * 2 1 3 5 5 N 1.47018 * 109.25519 * 183.17358 * 4 2 1 6 6 C 1.46900 * 110.99611 * 182.39301 * 5 4 2 7 7 C 1.52996 * 109.47506 * 66.04410 * 6 5 4 8 8 C 1.53000 * 109.47422 * 179.97438 * 7 6 5 9 9 S 1.81000 * 109.47148 * 180.02562 * 8 7 6 10 10 C 1.76199 * 99.99871 * 180.02562 * 9 8 7 11 11 H 1.08009 * 120.00150 * 359.72084 * 10 9 8 12 12 C 1.38795 * 120.00161 * 180.02562 * 10 9 8 13 13 N 1.31634 * 120.00230 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00277 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47086 * 59.99722 * 14 12 10 16 16 H 1.48503 * 109.47155 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47243 * 299.99660 * 14 12 10 18 18 C 1.47016 * 110.75651 * 58.61479 * 5 4 2 19 19 C 1.53093 * 109.25433 * 301.38262 * 18 5 4 20 20 H 1.08999 * 109.51321 * 296.90964 * 19 18 5 21 21 C 1.53004 * 109.50448 * 176.77967 * 19 18 5 22 22 O 1.42903 * 109.47258 * 175.21879 * 21 19 18 23 23 O 1.43011 * 109.54307 * 120.11035 * 2 1 3 24 24 H 1.08998 * 109.46485 * 180.08267 * 1 2 3 25 25 H 1.08996 * 109.46810 * 300.08679 * 1 2 3 26 26 H 1.08998 * 109.46852 * 60.08769 * 1 2 3 27 27 H 1.09000 * 109.50564 * 63.24194 * 4 2 1 28 28 H 1.08997 * 109.54246 * 303.12690 * 4 2 1 29 29 H 1.09000 * 109.46968 * 306.04305 * 6 5 4 30 30 H 1.09005 * 109.46941 * 186.04463 * 6 5 4 31 31 H 1.09000 * 109.47093 * 59.99972 * 7 6 5 32 32 H 1.08997 * 109.47219 * 300.00260 * 7 6 5 33 33 H 1.09000 * 109.46890 * 59.99994 * 8 7 6 34 34 H 1.09005 * 109.47103 * 300.00100 * 8 7 6 35 35 H 0.96991 * 120.00676 * 180.02562 * 13 12 10 36 36 H 1.09004 * 109.50206 * 61.31667 * 18 5 4 37 37 H 1.08998 * 109.50542 * 181.44625 * 18 5 4 38 38 H 1.09002 * 109.47389 * 295.21599 * 21 19 18 39 39 H 1.09003 * 109.47020 * 55.21799 * 21 19 18 40 40 H 0.96694 * 113.99913 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0412 -0.7234 -1.2487 5 7 3.5094 -0.7870 -1.2053 6 6 4.0447 -1.4249 -2.4154 7 6 3.7544 -0.5401 -3.6294 8 6 4.3125 -1.2041 -4.8897 9 16 3.9698 -0.1569 -6.3257 10 6 4.6987 -1.1341 -7.5979 11 1 5.1741 -2.0724 -7.3527 12 6 4.6675 -0.6951 -8.9142 13 7 4.0929 0.4511 -9.2123 14 14 5.4396 -1.7313 -10.2630 15 1 4.7730 -3.0575 -10.3113 16 1 5.2731 -1.0463 -11.5701 17 1 6.8859 -1.9142 -9.9802 18 6 3.9650 -1.4869 0.0047 19 6 3.4344 -0.7558 1.2407 20 1 3.8537 0.2497 1.2769 21 6 3.8377 -1.5240 2.5010 22 8 3.4394 -0.7849 3.6574 23 8 2.0084 -0.6761 1.1659 24 1 -0.3632 -1.0277 0.0015 25 1 -0.3633 0.5152 0.8892 26 1 -0.3633 0.5125 -0.8908 27 1 1.7267 -0.1790 -2.1391 28 1 1.6339 -1.7340 -1.2771 29 1 3.5717 -2.3972 -2.5532 30 1 5.1217 -1.5563 -2.3108 31 1 4.2274 0.4323 -3.4917 32 1 2.6775 -0.4086 -3.7340 33 1 3.8399 -2.1766 -5.0276 34 1 5.3896 -1.3352 -4.7848 35 1 4.0707 0.7578 -10.1322 36 1 3.5882 -2.5097 -0.0029 37 1 5.0546 -1.4998 0.0292 38 1 3.3474 -2.4976 2.5055 39 1 4.9189 -1.6616 2.5123 40 1 3.6642 -1.2133 4.4946 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191787317.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:35 Heat of formation + Delta-G solvation = -107.180561 kcal Electronic energy + Delta-G solvation = -19185.032488 eV Core-core repulsion = 16125.521879 eV Total energy + Delta-G solvation = -3059.510610 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.03039 -37.14484 -36.26304 -33.28162 -32.72424 -32.41045 -29.68555 -26.78891 -26.31733 -25.47291 -23.05717 -22.17211 -20.79893 -20.49618 -17.66746 -17.46082 -16.91932 -16.29859 -15.74278 -15.33547 -14.82508 -14.78376 -14.39857 -14.22670 -14.18133 -13.69009 -13.09522 -12.87854 -12.73777 -12.49654 -12.08004 -11.95114 -11.84214 -11.60554 -11.21759 -11.15747 -11.04670 -10.85719 -10.67352 -10.64669 -10.36148 -10.26596 -9.76189 -9.47510 -9.05366 -8.47549 -8.30817 -6.53022 -6.22746 -3.93194 3.20148 3.22805 3.27378 3.40761 3.44282 3.66400 4.03060 4.22455 4.69487 4.71493 4.83535 4.88955 4.98009 5.00278 5.12892 5.13921 5.19964 5.25934 5.30432 5.36228 5.47578 5.48587 5.65073 5.66301 5.71188 5.75547 5.86765 5.91596 6.01052 6.06954 6.31658 6.55838 6.70873 6.87162 6.94304 7.08624 7.31570 7.59937 8.36170 9.23277 10.85412 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.039603 B = 0.002925 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.855706 B = 9570.105854 C =10051.929852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.089 3.911 3 H 0.067 0.933 4 C 0.019 3.981 5 N -0.535 5.535 6 C 0.061 3.939 7 C -0.094 4.094 8 C -0.113 4.113 9 S -0.131 6.131 10 C -0.517 4.517 11 H 0.071 0.929 12 C 0.071 3.929 13 N -0.870 5.870 14 Si 0.918 3.082 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.026 3.974 19 C 0.096 3.904 20 H 0.074 0.926 21 C 0.086 3.914 22 O -0.565 6.565 23 O -0.373 6.373 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.042 0.958 29 H 0.034 0.966 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.268 0.732 36 H 0.042 0.958 37 H 0.087 0.913 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.275 -4.194 22.270 22.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.031 3.969 3 H 0.085 0.915 4 C -0.109 4.109 5 N -0.260 5.260 6 C -0.068 4.068 7 C -0.132 4.132 8 C -0.262 4.262 9 S 0.097 5.903 10 C -0.665 4.665 11 H 0.090 0.910 12 C -0.138 4.138 13 N -0.505 5.505 14 Si 0.745 3.255 15 H -0.200 1.200 16 H -0.208 1.208 17 H -0.199 1.199 18 C -0.103 4.103 19 C 0.037 3.963 20 H 0.092 0.908 21 C 0.007 3.993 22 O -0.370 6.370 23 O -0.293 6.293 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.113 0.887 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.105 0.895 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -3.015 -2.244 21.730 22.053 hybrid contribution 1.281 -3.039 -0.743 3.381 sum -1.735 -5.284 20.987 21.712 Atomic orbital electron populations 1.21738 0.92697 1.02892 1.02774 1.22177 0.94862 0.95792 0.84045 0.91454 1.22933 0.87815 1.00407 0.99764 1.62173 1.09035 1.52822 1.01953 1.22218 0.99944 0.95737 0.88901 1.21279 1.01473 0.99206 0.91286 1.23230 1.02226 1.02214 0.98536 1.84631 1.76976 1.30881 0.97809 1.22650 1.42428 1.08350 0.93107 0.91047 1.25014 0.95261 0.95425 0.98086 1.70010 1.41498 1.19351 1.19684 0.86226 0.79586 0.79848 0.79872 1.19964 1.20799 1.19938 1.22657 1.01112 0.96117 0.90392 1.22065 0.82319 0.99617 0.92284 0.90828 1.22113 0.98035 0.94256 0.84867 1.86546 1.84421 1.50069 1.15935 1.88012 1.19963 1.78402 1.42891 0.91988 0.91612 0.90625 0.88710 0.93973 0.94754 0.90611 0.90672 0.91644 0.92359 0.92115 0.92241 0.93938 0.89472 0.92888 0.91994 0.77479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.57 37.16 0.36 -1.02 16 2 C 0.09 1.03 3.42 -26.68 -0.09 0.94 16 3 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 4 C 0.02 0.23 4.72 -3.71 -0.02 0.21 16 5 N -0.54 -6.79 4.73 -234.30 -1.11 -7.90 16 6 C 0.06 0.82 4.96 -3.83 -0.02 0.80 16 7 C -0.09 -1.54 5.15 -26.73 -0.14 -1.68 16 8 C -0.11 -2.28 5.67 37.16 0.21 -2.06 16 9 S -0.13 -3.45 21.44 -107.50 -2.30 -5.75 16 10 C -0.52 -14.89 9.50 30.94 0.29 -14.60 16 11 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 12 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 13 N -0.87 -26.09 13.22 55.49 0.73 -25.36 16 14 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 15 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 C 0.03 0.28 4.93 -3.71 -0.02 0.26 16 19 C 0.10 1.05 3.09 -26.68 -0.08 0.97 16 20 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 21 C 0.09 0.73 6.71 37.16 0.25 0.98 16 22 O -0.56 -5.30 13.63 -39.95 -0.54 -5.84 16 23 O -0.37 -4.79 10.08 -39.95 -0.40 -5.19 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 1.18 6.37 -51.93 -0.33 0.85 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 30 H 0.08 0.97 8.04 -51.93 -0.42 0.56 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.06 1.08 6.51 -51.93 -0.34 0.74 16 33 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 34 H 0.06 1.21 8.14 -51.91 -0.42 0.79 16 35 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.81 8.09 -51.93 -0.42 0.39 16 38 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.38 1.60 9.12 45.56 0.42 2.02 16 LS Contribution 337.25 15.07 5.08 5.08 Total: -1.00 -33.33 337.25 -9.05 -42.38 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -6.13 Total: -0.70 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 0.65 Total: -13.26 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: -0.37 Total: -33.25 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: -0.95 Total: -11.04 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -3.45 SS G_CDS: -2.30 Total: -5.75 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.33 -9.05 -42.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191787317.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.802 kcal (2) G-P(sol) polarization free energy of solvation -33.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds