Wall clock time and date at job start Mon Mar 30 2020 02:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.51067 * 2 1 4 4 C 1.53102 * 109.50660 * 239.91580 * 2 1 3 5 5 N 1.47018 * 109.25519 * 183.17358 * 4 2 1 6 6 C 1.46900 * 110.99611 * 182.39301 * 5 4 2 7 7 C 1.52996 * 109.47506 * 66.04410 * 6 5 4 8 8 C 1.53000 * 109.47422 * 179.97438 * 7 6 5 9 9 S 1.81000 * 109.47148 * 180.02562 * 8 7 6 10 10 C 1.76199 * 99.99871 * 180.02562 * 9 8 7 11 11 H 1.08009 * 120.00150 * 359.72084 * 10 9 8 12 12 C 1.38795 * 120.00161 * 180.02562 * 10 9 8 13 13 N 1.31634 * 120.00230 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00277 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47086 * 59.99722 * 14 12 10 16 16 H 1.48503 * 109.47155 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47243 * 299.99660 * 14 12 10 18 18 C 1.47016 * 110.75651 * 58.61479 * 5 4 2 19 19 C 1.53093 * 109.25433 * 301.38262 * 18 5 4 20 20 H 1.08999 * 109.51321 * 296.90964 * 19 18 5 21 21 C 1.53004 * 109.50448 * 176.77967 * 19 18 5 22 22 O 1.42903 * 109.47258 * 175.21879 * 21 19 18 23 23 O 1.43011 * 109.54307 * 120.11035 * 2 1 3 24 24 H 1.08998 * 109.46485 * 180.08267 * 1 2 3 25 25 H 1.08996 * 109.46810 * 300.08679 * 1 2 3 26 26 H 1.08998 * 109.46852 * 60.08769 * 1 2 3 27 27 H 1.09000 * 109.50564 * 63.24194 * 4 2 1 28 28 H 1.08997 * 109.54246 * 303.12690 * 4 2 1 29 29 H 1.09000 * 109.46968 * 306.04305 * 6 5 4 30 30 H 1.09005 * 109.46941 * 186.04463 * 6 5 4 31 31 H 1.09000 * 109.47093 * 59.99972 * 7 6 5 32 32 H 1.08997 * 109.47219 * 300.00260 * 7 6 5 33 33 H 1.09000 * 109.46890 * 59.99994 * 8 7 6 34 34 H 1.09005 * 109.47103 * 300.00100 * 8 7 6 35 35 H 0.96991 * 120.00676 * 180.02562 * 13 12 10 36 36 H 1.09004 * 109.50206 * 61.31667 * 18 5 4 37 37 H 1.08998 * 109.50542 * 181.44625 * 18 5 4 38 38 H 1.09002 * 109.47389 * 295.21599 * 21 19 18 39 39 H 1.09003 * 109.47020 * 55.21799 * 21 19 18 40 40 H 0.96694 * 113.99913 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0412 -0.7234 -1.2487 5 7 3.5094 -0.7870 -1.2053 6 6 4.0447 -1.4249 -2.4154 7 6 3.7544 -0.5401 -3.6294 8 6 4.3125 -1.2041 -4.8897 9 16 3.9698 -0.1569 -6.3257 10 6 4.6987 -1.1341 -7.5979 11 1 5.1741 -2.0724 -7.3527 12 6 4.6675 -0.6951 -8.9142 13 7 4.0929 0.4511 -9.2123 14 14 5.4396 -1.7313 -10.2630 15 1 4.7730 -3.0575 -10.3113 16 1 5.2731 -1.0463 -11.5701 17 1 6.8859 -1.9142 -9.9802 18 6 3.9650 -1.4869 0.0047 19 6 3.4344 -0.7558 1.2407 20 1 3.8537 0.2497 1.2769 21 6 3.8377 -1.5240 2.5010 22 8 3.4394 -0.7849 3.6574 23 8 2.0084 -0.6761 1.1659 24 1 -0.3632 -1.0277 0.0015 25 1 -0.3633 0.5152 0.8892 26 1 -0.3633 0.5125 -0.8908 27 1 1.7267 -0.1790 -2.1391 28 1 1.6339 -1.7340 -1.2771 29 1 3.5717 -2.3972 -2.5532 30 1 5.1217 -1.5563 -2.3108 31 1 4.2274 0.4323 -3.4917 32 1 2.6775 -0.4086 -3.7340 33 1 3.8399 -2.1766 -5.0276 34 1 5.3896 -1.3352 -4.7848 35 1 4.0707 0.7578 -10.1322 36 1 3.5882 -2.5097 -0.0029 37 1 5.0546 -1.4998 0.0292 38 1 3.3474 -2.4976 2.5055 39 1 4.9189 -1.6616 2.5123 40 1 3.6642 -1.2133 4.4946 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191787317.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:34 Heat of formation + Delta-G solvation = -132.321621 kcal Electronic energy + Delta-G solvation = -19186.122686 eV Core-core repulsion = 16125.521879 eV Total energy + Delta-G solvation = -3060.600808 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.93714 -37.93263 -37.20693 -34.62147 -34.19821 -33.88801 -30.58056 -28.02878 -27.62814 -27.08788 -24.19169 -23.01189 -21.97631 -21.45255 -19.56647 -18.30772 -17.78464 -17.29876 -16.89743 -16.79265 -16.27232 -16.12922 -15.66842 -15.38918 -15.05653 -14.84231 -14.62084 -13.87663 -13.60886 -13.50670 -13.44647 -13.19222 -13.08510 -12.89958 -12.82371 -12.57623 -12.47970 -12.21631 -11.98716 -11.67664 -11.55713 -11.33654 -11.13441 -10.97574 -10.59427 -10.31637 -9.45274 -8.67208 -8.37429 -6.14008 1.30908 1.40599 1.47450 1.72941 2.27934 2.58976 2.66912 2.96674 3.29692 3.32035 3.81064 3.85578 3.97415 4.02643 4.07872 4.14848 4.25837 4.33369 4.36096 4.42406 4.45835 4.50024 4.55425 4.62103 4.66639 4.77261 4.81296 4.88645 4.96301 5.06453 5.14517 5.24380 5.28172 5.39049 5.88922 5.92577 6.17589 6.21649 6.91847 7.04534 8.71783 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.039603 B = 0.002925 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.855706 B = 9570.105854 C =10051.929852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.088 3.912 3 H 0.059 0.941 4 C 0.021 3.979 5 N -0.546 5.546 6 C 0.072 3.928 7 C -0.082 4.082 8 C -0.087 4.087 9 S -0.198 6.198 10 C -0.539 4.539 11 H 0.073 0.927 12 C 0.015 3.985 13 N -0.908 5.908 14 Si 0.994 3.006 15 H -0.264 1.264 16 H -0.275 1.275 17 H -0.264 1.264 18 C 0.029 3.971 19 C 0.089 3.911 20 H 0.060 0.940 21 C 0.088 3.912 22 O -0.590 6.590 23 O -0.389 6.389 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.041 0.959 29 H 0.039 0.961 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.272 0.728 36 H 0.047 0.953 37 H 0.105 0.895 38 H 0.059 0.941 39 H 0.089 0.911 40 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.464 -5.754 23.040 23.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.030 3.970 3 H 0.077 0.923 4 C -0.107 4.107 5 N -0.271 5.271 6 C -0.057 4.057 7 C -0.121 4.121 8 C -0.236 4.236 9 S 0.030 5.970 10 C -0.687 4.687 11 H 0.091 0.909 12 C -0.190 4.190 13 N -0.544 5.544 14 Si 0.816 3.184 15 H -0.189 1.189 16 H -0.200 1.200 17 H -0.189 1.189 18 C -0.099 4.099 19 C 0.031 3.969 20 H 0.078 0.922 21 C 0.010 3.990 22 O -0.398 6.398 23 O -0.309 6.309 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.104 0.896 27 H 0.106 0.894 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.123 0.877 38 H 0.077 0.923 39 H 0.107 0.893 40 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -2.202 -3.811 22.535 22.961 hybrid contribution 1.015 -2.528 -0.861 2.857 sum -1.187 -6.339 21.674 22.613 Atomic orbital electron populations 1.21735 0.91356 1.03156 1.03465 1.22223 0.95975 0.95134 0.83636 0.92309 1.22908 0.87737 1.00277 0.99792 1.62125 1.09261 1.53369 1.02341 1.22027 1.00776 0.94948 0.87962 1.21151 1.00924 0.99098 0.90935 1.23143 1.02676 1.01056 0.96773 1.84661 1.77497 1.33717 1.01084 1.23013 1.42798 1.08667 0.94192 0.90859 1.26081 0.95536 0.96682 1.00733 1.70148 1.42687 1.21153 1.20440 0.85068 0.78870 0.78119 0.76375 1.18915 1.19992 1.18871 1.22697 1.02148 0.95925 0.89129 1.22236 0.81403 0.99418 0.93822 0.92245 1.22147 0.99600 0.93657 0.83587 1.86483 1.84892 1.51161 1.17306 1.88003 1.21186 1.78453 1.43264 0.91891 0.91310 0.89565 0.89364 0.94073 0.94269 0.89426 0.91534 0.91930 0.92012 0.91672 0.91952 0.93458 0.87685 0.92285 0.89326 0.75057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.57 71.98 0.69 -1.88 16 2 C 0.09 2.00 3.42 30.63 0.10 2.10 16 3 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 4 C 0.02 0.49 4.72 86.31 0.41 0.90 16 5 N -0.55 -13.06 4.73 -895.20 -4.23 -17.30 16 6 C 0.07 1.81 4.96 86.30 0.43 2.24 16 7 C -0.08 -2.64 5.15 30.59 0.16 -2.48 16 8 C -0.09 -3.46 5.67 71.98 0.41 -3.05 16 9 S -0.20 -10.60 21.44 -56.49 -1.21 -11.81 16 10 C -0.54 -31.20 9.50 67.95 0.65 -30.56 16 11 H 0.07 4.06 7.80 -2.91 -0.02 4.04 16 12 C 0.01 0.83 5.49 84.86 0.47 1.30 16 13 N -0.91 -55.08 13.22 21.65 0.29 -54.80 16 14 Si 0.99 43.87 29.55 68.60 2.03 45.90 16 15 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 16 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 17 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 18 C 0.03 0.56 4.93 86.31 0.43 0.99 16 19 C 0.09 1.84 3.09 30.63 0.09 1.93 16 20 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 21 C 0.09 1.31 6.71 71.98 0.48 1.79 16 22 O -0.59 -10.09 13.63 -144.47 -1.97 -12.06 16 23 O -0.39 -9.65 10.08 -144.47 -1.46 -11.10 16 24 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.09 1.37 8.14 -2.39 -0.02 1.36 16 27 H 0.09 2.16 6.37 -2.39 -0.02 2.15 16 28 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.04 0.96 8.12 -2.39 -0.02 0.94 16 30 H 0.09 2.02 8.04 -2.38 -0.02 2.00 16 31 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.06 2.04 6.51 -2.39 -0.02 2.03 16 33 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 36 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.10 1.64 8.09 -2.39 -0.02 1.62 16 38 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.40 2.62 9.12 -74.06 -0.68 1.95 16 Total: -1.00 -71.63 337.25 -1.92 -73.55 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 0.33 Total: 14.35 kcal Atomic # 6 Polarization: -31.03 SS G_CDS: 4.31 Total: -26.72 kcal Atomic # 7 Polarization: -68.15 SS G_CDS: -3.95 Total: -72.09 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -3.42 Total: -23.17 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: -10.60 SS G_CDS: -1.21 Total: -11.81 kcal Total: -71.63 -1.92 -73.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191787317.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.776 kcal (2) G-P(sol) polarization free energy of solvation -71.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds