Wall clock time and date at job start Mon Mar 30 2020 02:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.51047 * 2 1 4 4 C 1.52908 * 109.50895 * 239.89903 * 2 1 3 5 5 C 1.53848 * 115.30312 * 198.41410 * 4 2 1 6 6 S 1.80063 * 112.95957 * 316.11950 * 5 4 2 7 7 O 1.42096 * 108.59499 * 331.20966 * 6 5 4 8 8 O 1.42103 * 108.59265 * 200.13214 * 6 5 4 9 9 C 1.83498 * 101.81276 * 85.67359 * 6 5 4 10 10 C 1.45726 * 109.65731 * 291.54397 * 9 6 5 11 11 N 1.45584 * 109.54839 * 120.12419 * 2 1 3 12 12 C 1.46897 * 111.00458 * 346.04449 * 11 2 1 13 13 C 1.53002 * 109.47493 * 174.62759 * 12 11 2 14 14 C 1.53004 * 109.47047 * 185.07013 * 13 12 11 15 15 C 1.50700 * 109.46969 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99955 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99893 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99905 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99991 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47342 * 59.99221 * 19 17 15 21 21 H 1.48500 * 109.47370 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46748 * 299.99602 * 19 17 15 23 23 H 1.09001 * 109.46865 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.46811 * 300.02476 * 1 2 3 25 25 H 1.08997 * 109.46883 * 60.02721 * 1 2 3 26 26 H 1.08992 * 108.31491 * 76.90355 * 4 2 1 27 27 H 1.08994 * 108.17692 * 319.81243 * 4 2 1 28 28 H 1.08997 * 108.78449 * 195.22296 * 5 4 2 29 29 H 1.09003 * 108.78716 * 77.01628 * 5 4 2 30 30 H 1.09002 * 109.43891 * 171.49167 * 9 6 5 31 31 H 1.08997 * 109.43950 * 51.60764 * 9 6 5 32 32 H 1.09004 * 108.31391 * 186.00594 * 10 9 6 33 33 H 1.09005 * 108.31531 * 302.97247 * 10 9 6 34 34 H 1.09007 * 109.46987 * 294.62940 * 12 11 2 35 35 H 1.09000 * 109.47003 * 54.62379 * 12 11 2 36 36 H 1.09001 * 109.46969 * 305.06505 * 13 12 11 37 37 H 1.08992 * 109.47121 * 65.06685 * 13 12 11 38 38 H 1.09001 * 109.46821 * 299.99582 * 14 13 12 39 39 H 1.09002 * 109.47009 * 59.99514 * 14 13 12 40 40 H 0.97005 * 119.99509 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0407 -0.7228 -1.2469 5 6 3.5042 -1.1928 -1.1815 6 16 4.6105 0.0492 -0.4917 7 8 4.0799 1.3364 -0.7754 8 8 5.9399 -0.2570 -0.8898 9 6 4.4520 -0.2653 1.3092 10 6 3.1158 0.1071 1.7561 11 7 2.0172 -0.6885 1.1866 12 6 0.9392 -0.8750 2.1670 13 6 1.4536 -1.7162 3.3369 14 6 0.2993 -2.0169 4.2952 15 6 0.8060 -2.8448 5.4479 16 1 1.8472 -3.1286 5.4923 17 6 -0.0596 -3.2410 6.4451 18 7 -1.3275 -2.8959 6.3907 19 14 0.5686 -4.2667 7.8743 20 1 1.6270 -3.5151 8.5955 21 1 -0.5516 -4.5587 8.8043 22 1 1.1302 -5.5414 7.3595 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5142 0.8897 25 1 -0.3633 0.5134 -0.8902 26 1 1.9341 -0.0521 -2.0994 27 1 1.4086 -1.5942 -1.4176 28 1 3.8388 -1.4401 -2.1890 29 1 3.5573 -2.0909 -0.5661 30 1 5.1925 0.3265 1.8473 31 1 4.6195 -1.3236 1.5088 32 1 3.0793 0.0138 2.8415 33 1 2.9486 1.1536 1.5011 34 1 0.6107 0.0970 2.5351 35 1 0.1013 -1.3860 1.6928 36 1 1.8647 -2.6520 2.9585 37 1 2.2311 -1.1654 3.8662 38 1 -0.1119 -1.0810 4.6736 39 1 -0.4783 -2.5676 3.7658 40 1 -1.9367 -3.1750 7.0922 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192088814.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:17 Heat of formation + Delta-G solvation = -66.864809 kcal Electronic energy + Delta-G solvation = -20376.084557 eV Core-core repulsion = 17318.322170 eV Total energy + Delta-G solvation = -3057.762387 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.51159 -36.99060 -36.08980 -34.53969 -33.68722 -32.52191 -31.06217 -28.90528 -26.60978 -24.62884 -23.14393 -22.57078 -20.32351 -19.60470 -18.76843 -16.98920 -16.76862 -16.32518 -16.19792 -15.69349 -14.97473 -14.83009 -14.43743 -14.39172 -13.65346 -13.39265 -13.12425 -12.87967 -12.39622 -12.18688 -12.13952 -11.97524 -11.94393 -11.75467 -11.71136 -11.42893 -11.14364 -11.01322 -10.85882 -10.56227 -10.50304 -10.33847 -10.22573 -9.66561 -9.39460 -9.11851 -8.37992 -8.37512 -6.03642 -4.06020 -0.04060 2.60180 3.30530 3.35291 3.37451 3.54212 3.73129 3.96180 4.42316 4.45521 4.54108 4.72871 4.77810 4.94087 5.00899 5.14069 5.32108 5.32430 5.45608 5.58724 5.62976 5.69814 5.74495 5.79931 5.82292 5.89225 6.05878 6.08955 6.25659 6.57130 6.67460 6.97741 7.14888 7.19042 7.62759 7.77138 7.96021 8.38868 9.00801 9.58306 11.07650 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.028774 B = 0.004122 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.865620 B = 6791.306220 C = 7400.195757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.041 3.959 3 H 0.081 0.919 4 C -0.077 4.077 5 C -0.597 4.597 6 S 2.405 3.595 7 O -0.942 6.942 8 O -0.954 6.954 9 C -0.569 4.569 10 C 0.034 3.966 11 N -0.528 5.528 12 C 0.051 3.949 13 C -0.110 4.110 14 C 0.023 3.977 15 C -0.521 4.521 16 H 0.054 0.946 17 C 0.057 3.943 18 N -0.896 5.896 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.127 0.873 29 H 0.139 0.861 30 H 0.135 0.865 31 H 0.139 0.861 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.036 0.964 35 H 0.085 0.915 36 H 0.057 0.943 37 H 0.047 0.953 38 H 0.014 0.986 39 H 0.016 0.984 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.390 5.767 -14.885 17.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.068 4.068 3 H 0.099 0.901 4 C -0.116 4.116 5 C -0.727 4.727 6 S 2.588 3.412 7 O -0.940 6.940 8 O -0.951 6.951 9 C -0.699 4.699 10 C -0.094 4.094 11 N -0.252 5.252 12 C -0.076 4.076 13 C -0.148 4.148 14 C -0.015 4.015 15 C -0.559 4.559 16 H 0.072 0.928 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.098 0.902 28 H 0.145 0.855 29 H 0.157 0.843 30 H 0.153 0.847 31 H 0.157 0.843 32 H 0.116 0.884 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.032 0.968 39 H 0.035 0.965 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.913 5.898 -15.383 18.277 hybrid contribution -0.384 -0.565 1.488 1.638 sum 7.529 5.333 -13.895 16.679 Atomic orbital electron populations 1.22201 0.93894 1.03057 1.02552 1.22209 0.96521 0.97379 0.90703 0.90093 1.21171 0.91285 1.01283 0.97872 1.30069 1.10929 1.18950 1.12794 1.08442 0.75879 0.77167 0.79672 1.93540 1.80538 1.36805 1.83076 1.93573 1.34469 1.85798 1.81254 1.28848 1.04774 1.12550 1.23733 1.20639 0.89271 0.96189 1.03335 1.62604 1.10068 1.45846 1.06701 1.22559 0.93006 0.99388 0.92607 1.21755 1.00216 0.98351 0.94434 1.19055 0.92693 0.96603 0.93123 1.21192 0.95241 1.32895 1.06570 0.92804 1.25015 0.94886 0.96267 0.98234 1.69952 1.03295 1.46150 1.34110 0.86667 0.78320 0.80790 0.82262 1.20284 1.21285 1.20239 0.91186 0.91352 0.92175 0.91112 0.90248 0.85516 0.84279 0.84674 0.84324 0.88440 0.92260 0.94561 0.89676 0.92457 0.93472 0.96790 0.96550 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 7.73 37.16 0.29 -1.40 16 2 C 0.04 0.45 2.44 -68.47 -0.17 0.29 16 3 H 0.08 0.93 5.43 -51.93 -0.28 0.65 16 4 C -0.08 -0.73 5.03 -26.34 -0.13 -0.86 16 5 C -0.60 -5.21 5.70 37.60 0.21 -5.00 16 6 S 2.40 25.22 5.17 -107.50 -0.56 24.67 16 7 O -0.94 -12.33 15.51 -57.83 -0.90 -13.23 16 8 O -0.95 -13.02 18.10 -57.83 -1.05 -14.06 16 9 C -0.57 -5.42 6.21 33.72 0.21 -5.21 16 10 C 0.03 0.40 4.53 -7.14 -0.03 0.37 16 11 N -0.53 -6.61 4.12 -231.85 -0.95 -7.56 16 12 C 0.05 0.77 3.61 -3.82 -0.01 0.76 16 13 C -0.11 -2.08 5.03 -26.73 -0.13 -2.21 16 14 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 15 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16 16 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16 19 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H 0.07 0.75 6.97 -51.93 -0.36 0.39 16 24 H 0.07 0.76 6.59 -51.93 -0.34 0.42 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.08 0.72 7.91 -51.93 -0.41 0.31 16 28 H 0.13 0.88 8.14 -51.73 -0.42 0.46 16 29 H 0.14 1.10 8.08 -51.72 -0.42 0.69 16 30 H 0.14 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.14 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.10 1.23 5.74 -51.93 -0.30 0.93 16 33 H 0.06 0.66 6.39 -51.93 -0.33 0.33 16 34 H 0.04 0.55 7.38 -51.93 -0.38 0.17 16 35 H 0.09 1.29 5.97 -51.93 -0.31 0.98 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.05 0.87 6.40 -51.93 -0.33 0.54 16 38 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 314.89 15.07 4.75 4.75 Total: -1.00 -33.62 314.89 -9.70 -43.32 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -6.39 Total: -2.48 kcal Atomic # 6 Polarization: -25.68 SS G_CDS: -0.32 Total: -26.00 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: -0.22 Total: -33.25 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -1.94 Total: -27.29 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 25.22 SS G_CDS: -0.56 Total: 24.67 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.62 -9.70 -43.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192088814.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.547 kcal (2) G-P(sol) polarization free energy of solvation -33.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds