Wall clock time and date at job start Mon Mar 30 2020 02:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.51047 * 2 1 4 4 C 1.52908 * 109.50895 * 239.89903 * 2 1 3 5 5 C 1.53848 * 115.30312 * 198.41410 * 4 2 1 6 6 S 1.80063 * 112.95957 * 316.11950 * 5 4 2 7 7 O 1.42096 * 108.59499 * 331.20966 * 6 5 4 8 8 O 1.42103 * 108.59265 * 200.13214 * 6 5 4 9 9 C 1.83498 * 101.81276 * 85.67359 * 6 5 4 10 10 C 1.45726 * 109.65731 * 291.54397 * 9 6 5 11 11 N 1.45584 * 109.54839 * 120.12419 * 2 1 3 12 12 C 1.46897 * 111.00458 * 346.04449 * 11 2 1 13 13 C 1.53002 * 109.47493 * 174.62759 * 12 11 2 14 14 C 1.53004 * 109.47047 * 185.07013 * 13 12 11 15 15 C 1.50700 * 109.46969 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99955 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99893 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99905 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99991 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47342 * 59.99221 * 19 17 15 21 21 H 1.48500 * 109.47370 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46748 * 299.99602 * 19 17 15 23 23 H 1.09001 * 109.46865 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.46811 * 300.02476 * 1 2 3 25 25 H 1.08997 * 109.46883 * 60.02721 * 1 2 3 26 26 H 1.08992 * 108.31491 * 76.90355 * 4 2 1 27 27 H 1.08994 * 108.17692 * 319.81243 * 4 2 1 28 28 H 1.08997 * 108.78449 * 195.22296 * 5 4 2 29 29 H 1.09003 * 108.78716 * 77.01628 * 5 4 2 30 30 H 1.09002 * 109.43891 * 171.49167 * 9 6 5 31 31 H 1.08997 * 109.43950 * 51.60764 * 9 6 5 32 32 H 1.09004 * 108.31391 * 186.00594 * 10 9 6 33 33 H 1.09005 * 108.31531 * 302.97247 * 10 9 6 34 34 H 1.09007 * 109.46987 * 294.62940 * 12 11 2 35 35 H 1.09000 * 109.47003 * 54.62379 * 12 11 2 36 36 H 1.09001 * 109.46969 * 305.06505 * 13 12 11 37 37 H 1.08992 * 109.47121 * 65.06685 * 13 12 11 38 38 H 1.09001 * 109.46821 * 299.99582 * 14 13 12 39 39 H 1.09002 * 109.47009 * 59.99514 * 14 13 12 40 40 H 0.97005 * 119.99509 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0407 -0.7228 -1.2469 5 6 3.5042 -1.1928 -1.1815 6 16 4.6105 0.0492 -0.4917 7 8 4.0799 1.3364 -0.7754 8 8 5.9399 -0.2570 -0.8898 9 6 4.4520 -0.2653 1.3092 10 6 3.1158 0.1071 1.7561 11 7 2.0172 -0.6885 1.1866 12 6 0.9392 -0.8750 2.1670 13 6 1.4536 -1.7162 3.3369 14 6 0.2993 -2.0169 4.2952 15 6 0.8060 -2.8448 5.4479 16 1 1.8472 -3.1286 5.4923 17 6 -0.0596 -3.2410 6.4451 18 7 -1.3275 -2.8959 6.3907 19 14 0.5686 -4.2667 7.8743 20 1 1.6270 -3.5151 8.5955 21 1 -0.5516 -4.5587 8.8043 22 1 1.1302 -5.5414 7.3595 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5142 0.8897 25 1 -0.3633 0.5134 -0.8902 26 1 1.9341 -0.0521 -2.0994 27 1 1.4086 -1.5942 -1.4176 28 1 3.8388 -1.4401 -2.1890 29 1 3.5573 -2.0909 -0.5661 30 1 5.1925 0.3265 1.8473 31 1 4.6195 -1.3236 1.5088 32 1 3.0793 0.0138 2.8415 33 1 2.9486 1.1536 1.5011 34 1 0.6107 0.0970 2.5351 35 1 0.1013 -1.3860 1.6928 36 1 1.8647 -2.6520 2.9585 37 1 2.2311 -1.1654 3.8662 38 1 -0.1119 -1.0810 4.6736 39 1 -0.4783 -2.5676 3.7658 40 1 -1.9367 -3.1750 7.0922 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192088814.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:16 Heat of formation + Delta-G solvation = -91.178254 kcal Electronic energy + Delta-G solvation = -20377.138867 eV Core-core repulsion = 17318.322170 eV Total energy + Delta-G solvation = -3058.816698 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.49431 -37.93341 -37.01583 -36.05473 -34.83560 -33.93450 -32.38720 -29.97980 -28.13854 -25.81470 -24.29552 -23.77749 -21.80824 -20.67860 -19.61331 -18.44509 -17.82630 -17.57806 -17.20730 -16.57527 -16.51524 -15.92674 -15.74039 -15.66272 -14.54253 -14.44931 -14.20553 -14.03643 -13.75961 -13.52179 -13.24615 -13.14533 -13.02166 -12.89067 -12.69946 -12.66003 -12.50416 -12.48494 -12.16038 -11.89083 -11.80712 -11.47994 -11.33566 -11.16551 -11.06414 -10.92165 -10.51210 -9.40657 -8.18133 -6.28344 -0.84891 1.41407 1.43445 1.51352 1.82458 2.41931 2.70773 2.82137 3.11287 3.15579 3.65505 3.79211 3.89467 4.02579 4.05983 4.17177 4.26364 4.36208 4.47674 4.59699 4.70947 4.77235 4.82306 4.83546 4.94920 5.01587 5.04148 5.05253 5.19275 5.26228 5.29344 5.36392 5.55675 5.78575 5.89972 6.00290 6.10178 6.29652 6.89171 7.40897 8.93312 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.028774 B = 0.004122 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.865620 B = 6791.306220 C = 7400.195757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.036 3.964 3 H 0.078 0.922 4 C -0.081 4.081 5 C -0.589 4.589 6 S 2.414 3.586 7 O -0.972 6.972 8 O -0.988 6.988 9 C -0.565 4.565 10 C 0.030 3.970 11 N -0.524 5.524 12 C 0.062 3.938 13 C -0.095 4.095 14 C 0.026 3.974 15 C -0.541 4.541 16 H 0.059 0.941 17 C 0.001 3.999 18 N -0.933 5.933 19 Si 0.960 3.040 20 H -0.268 1.268 21 H -0.285 1.285 22 H -0.267 1.267 23 H 0.067 0.933 24 H 0.056 0.944 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.149 0.851 29 H 0.152 0.848 30 H 0.154 0.846 31 H 0.153 0.847 32 H 0.088 0.912 33 H 0.062 0.938 34 H 0.033 0.967 35 H 0.085 0.915 36 H 0.057 0.943 37 H 0.051 0.949 38 H -0.011 1.011 39 H -0.007 1.007 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.414 5.049 -15.398 18.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.072 4.072 3 H 0.096 0.904 4 C -0.120 4.120 5 C -0.721 4.721 6 S 2.601 3.399 7 O -0.969 6.969 8 O -0.985 6.985 9 C -0.695 4.695 10 C -0.099 4.099 11 N -0.248 5.248 12 C -0.065 4.065 13 C -0.133 4.133 14 C -0.012 4.012 15 C -0.579 4.579 16 H 0.077 0.923 17 C -0.197 4.197 18 N -0.573 5.573 19 Si 0.785 3.215 20 H -0.193 1.193 21 H -0.210 1.210 22 H -0.192 1.192 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.096 0.904 26 H 0.102 0.898 27 H 0.107 0.893 28 H 0.167 0.833 29 H 0.170 0.830 30 H 0.172 0.828 31 H 0.171 0.829 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.051 0.949 35 H 0.103 0.897 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.008 0.992 39 H 0.012 0.988 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.970 5.203 -15.914 18.995 hybrid contribution -0.750 -0.323 1.634 1.827 sum 8.220 4.880 -14.281 17.185 Atomic orbital electron populations 1.22194 0.93604 1.03005 1.02940 1.22319 0.96918 0.97388 0.90625 0.90396 1.21214 0.91718 1.01841 0.97220 1.29985 1.09674 1.18136 1.14296 1.08011 0.75238 0.76866 0.79805 1.93499 1.80781 1.38941 1.83723 1.93530 1.36697 1.86241 1.82018 1.28805 1.03952 1.13937 1.22844 1.20715 0.89941 0.96462 1.02765 1.62579 1.09318 1.46591 1.06338 1.22282 0.93707 0.98467 0.92025 1.21505 0.98014 0.99155 0.94648 1.18963 0.94012 0.94655 0.93582 1.21676 0.95603 1.33086 1.07536 0.92283 1.25929 0.95038 0.97535 1.01195 1.70084 1.04601 1.47478 1.35184 0.85572 0.77882 0.79302 0.78720 1.19316 1.21012 1.19214 0.91412 0.92495 0.90367 0.89832 0.89310 0.83302 0.83029 0.82814 0.82864 0.89396 0.91959 0.94891 0.89657 0.92405 0.93005 0.99223 0.98836 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 7.73 71.98 0.56 -2.61 16 2 C 0.04 0.74 2.44 45.13 0.11 0.85 16 3 H 0.08 1.68 5.43 -2.39 -0.01 1.66 16 4 C -0.08 -1.32 5.03 30.85 0.16 -1.17 16 5 C -0.59 -8.64 5.70 72.27 0.41 -8.23 16 6 S 2.41 46.70 5.17 -56.49 -0.29 46.41 16 7 O -0.97 -24.37 15.51 -127.38 -1.98 -26.34 16 8 O -0.99 -25.75 18.10 -127.38 -2.31 -28.06 16 9 C -0.56 -9.63 6.21 69.76 0.43 -9.20 16 10 C 0.03 0.65 4.53 84.04 0.38 1.03 16 11 N -0.52 -12.30 4.12 -887.43 -3.65 -15.95 16 12 C 0.06 1.86 3.61 86.30 0.31 2.17 16 13 C -0.10 -3.58 5.03 30.60 0.15 -3.43 16 14 C 0.03 1.28 4.97 29.85 0.15 1.43 16 15 C -0.54 -29.94 9.11 25.60 0.23 -29.71 16 16 H 0.06 3.13 7.74 -2.91 -0.02 3.10 16 17 C 0.00 0.04 5.46 84.65 0.46 0.50 16 18 N -0.93 -55.86 13.29 21.45 0.28 -55.57 16 19 Si 0.96 43.45 29.54 68.60 2.03 45.48 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 23 H 0.07 1.37 6.97 -2.39 -0.02 1.35 16 24 H 0.06 1.24 6.59 -2.39 -0.02 1.23 16 25 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.09 1.34 7.91 -2.39 -0.02 1.32 16 28 H 0.15 1.59 8.14 -2.52 -0.02 1.57 16 29 H 0.15 1.91 8.08 -2.51 -0.02 1.89 16 30 H 0.15 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.15 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.09 2.11 5.74 -2.38 -0.01 2.09 16 33 H 0.06 1.32 6.39 -2.38 -0.02 1.31 16 34 H 0.03 1.00 7.38 -2.38 -0.02 0.98 16 35 H 0.09 2.55 5.97 -2.39 -0.01 2.54 16 36 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.05 1.89 6.40 -2.39 -0.02 1.87 16 38 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 39 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 40 H 0.26 14.84 8.31 -92.70 -0.77 14.07 16 Total: -1.00 -71.89 314.89 -1.55 -73.44 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 1.01 Total: 8.94 kcal Atomic # 6 Polarization: -51.70 SS G_CDS: 3.36 Total: -48.35 kcal Atomic # 7 Polarization: -68.16 SS G_CDS: -3.37 Total: -71.53 kcal Atomic # 8 Polarization: -50.12 SS G_CDS: -4.28 Total: -54.40 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: 46.70 SS G_CDS: -0.29 Total: 46.41 kcal Total: -71.89 -1.55 -73.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192088814.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.739 kcal (2) G-P(sol) polarization free energy of solvation -71.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds