Wall clock time and date at job start Mon Mar 30 2020 02:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 108.01339 * 2 1 4 4 C 1.45117 * 108.27265 * 117.03914 * 2 1 3 5 5 C 1.55237 * 110.06034 * 184.99244 * 4 2 1 6 6 S 1.79275 * 109.70214 * 287.76027 * 5 4 2 7 7 O 1.42101 * 107.93147 * 202.81685 * 6 5 4 8 8 O 1.42108 * 107.92639 * 332.16875 * 6 5 4 9 9 C 1.82375 * 105.88328 * 87.44150 * 6 5 4 10 10 C 1.54637 * 110.74862 * 319.19993 * 9 6 5 11 11 N 1.45433 * 108.86671 * 321.03901 * 10 9 6 12 12 C 1.46900 * 110.99906 * 227.75070 * 11 10 9 13 13 C 1.52997 * 109.47217 * 59.51240 * 12 11 10 14 14 C 1.52996 * 109.47335 * 174.57199 * 13 12 11 15 15 C 1.50697 * 109.47568 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99704 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00500 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99895 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00261 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47169 * 269.99968 * 19 17 15 21 21 H 1.48501 * 109.47473 * 29.99814 * 19 17 15 22 22 H 1.48502 * 109.47378 * 150.00054 * 19 17 15 23 23 H 1.08994 * 109.47658 * 177.04297 * 1 2 3 24 24 H 1.09006 * 109.47369 * 297.05175 * 1 2 3 25 25 H 1.09002 * 109.46957 * 57.04347 * 1 2 3 26 26 H 1.08992 * 109.37018 * 305.17654 * 4 2 1 27 27 H 1.09000 * 109.36880 * 64.93847 * 4 2 1 28 28 H 1.08999 * 109.43314 * 47.82762 * 5 4 2 29 29 H 1.09004 * 109.43265 * 167.73244 * 5 4 2 30 30 H 1.08994 * 109.21996 * 79.53086 * 9 6 5 31 31 H 1.09008 * 109.21953 * 198.91689 * 9 6 5 32 32 H 1.08997 * 109.56850 * 201.22542 * 10 9 6 33 33 H 1.08997 * 109.56890 * 80.85973 * 10 9 6 34 34 H 1.09003 * 109.47065 * 299.51349 * 12 11 10 35 35 H 1.08996 * 109.46636 * 179.51450 * 12 11 10 36 36 H 1.09004 * 109.47306 * 54.57204 * 13 12 11 37 37 H 1.09005 * 109.46989 * 294.57634 * 13 12 11 38 38 H 1.09004 * 109.46920 * 59.99768 * 14 13 12 39 39 H 1.08997 * 109.47589 * 300.00447 * 14 13 12 40 40 H 0.97004 * 119.99935 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8670 1.0365 0.0000 4 6 1.9849 -0.6264 1.2274 5 6 3.5313 -0.5362 1.3297 6 16 4.2816 -1.6599 0.1514 7 8 5.5948 -1.9574 0.6057 8 8 3.3766 -2.7337 -0.0663 9 6 4.4252 -0.7251 -1.4079 10 6 3.1591 0.1280 -1.6538 11 7 1.9910 -0.6348 -1.2432 12 6 0.9458 -0.5931 -2.2746 13 6 1.4924 -1.1779 -3.5785 14 6 0.3672 -1.2596 -4.6120 15 6 0.9056 -1.8349 -5.8965 16 1 1.9463 -2.1148 -5.9684 17 6 0.0699 -2.0041 -6.9800 18 7 -1.1973 -1.6629 -6.8926 19 14 0.7372 -2.7179 -8.5719 20 1 1.2305 -1.6181 -9.4392 21 1 1.8547 -3.6474 -8.2676 22 1 -0.3430 -3.4559 -9.2747 23 1 -0.3634 -1.0262 -0.0530 24 1 -0.3634 0.4674 0.9153 25 1 -0.3633 0.5591 -0.8623 26 1 1.5358 -0.1183 2.0806 27 1 1.6847 -1.6743 1.2313 28 1 3.8503 0.4832 1.1124 29 1 3.8444 -0.8070 2.3381 30 1 5.2947 -0.0699 -1.3548 31 1 4.5525 -1.4239 -2.2348 32 1 3.0826 0.3707 -2.7137 33 1 3.2189 1.0467 -1.0704 34 1 0.6395 0.4398 -2.4399 35 1 0.0873 -1.1785 -1.9456 36 1 1.8872 -2.1765 -3.3916 37 1 2.2887 -0.5376 -3.9582 38 1 -0.0276 -0.2609 -4.7990 39 1 -0.4291 -1.8998 -4.2324 40 1 -1.5437 -1.2918 -6.0660 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192088820.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:19 Heat of formation + Delta-G solvation = -63.909954 kcal Electronic energy + Delta-G solvation = -20595.939115 eV Core-core repulsion = 17538.304859 eV Total energy + Delta-G solvation = -3057.634255 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.87534 -36.73130 -35.83284 -35.05466 -33.67269 -32.24605 -30.92421 -28.76208 -26.34154 -24.60227 -23.35952 -22.47821 -20.53541 -19.92992 -18.51226 -17.26716 -16.94281 -16.47210 -15.76303 -15.61735 -15.08072 -14.65279 -14.34806 -14.04486 -13.71799 -13.55927 -13.23207 -12.77916 -12.55380 -12.34456 -12.04878 -11.90867 -11.86628 -11.63924 -11.59478 -11.50388 -10.97908 -10.82644 -10.78231 -10.72793 -10.43144 -10.35344 -10.11045 -9.81909 -9.73965 -8.55735 -8.51646 -8.30744 -6.34821 -4.03518 0.08564 2.88728 3.44280 3.48813 3.64150 3.65849 3.75383 3.86537 4.37631 4.43171 4.55944 4.62884 4.74180 4.84817 5.01602 5.10960 5.19612 5.37836 5.41910 5.44301 5.49074 5.52361 5.62018 5.68220 5.69771 5.78352 6.01638 6.03342 6.16642 6.48180 6.57593 6.84386 7.02568 7.06221 7.41870 7.55141 8.23813 8.48535 8.90533 9.68515 11.05975 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.025589 B = 0.004592 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.941244 B = 6096.208779 C = 6820.651845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.048 3.952 3 H 0.055 0.945 4 C -0.089 4.089 5 C -0.629 4.629 6 S 2.439 3.561 7 O -0.967 6.967 8 O -0.914 6.914 9 C -0.593 4.593 10 C 0.042 3.958 11 N -0.518 5.518 12 C 0.055 3.945 13 C -0.107 4.107 14 C 0.010 3.990 15 C -0.600 4.600 16 H 0.048 0.952 17 C 0.014 3.986 18 N -0.915 5.915 19 Si 1.071 2.929 20 H -0.289 1.289 21 H -0.288 1.288 22 H -0.284 1.284 23 H 0.072 0.928 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.124 0.876 29 H 0.134 0.866 30 H 0.124 0.876 31 H 0.138 0.862 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.036 0.964 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.049 0.951 38 H 0.004 0.996 39 H 0.009 0.991 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.005 7.063 17.501 20.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.060 4.060 3 H 0.073 0.927 4 C -0.127 4.127 5 C -0.758 4.758 6 S 2.619 3.381 7 O -0.964 6.964 8 O -0.911 6.911 9 C -0.723 4.723 10 C -0.087 4.087 11 N -0.243 5.243 12 C -0.072 4.072 13 C -0.145 4.145 14 C -0.027 4.027 15 C -0.638 4.638 16 H 0.067 0.933 17 C -0.189 4.189 18 N -0.551 5.551 19 Si 0.899 3.101 20 H -0.216 1.216 21 H -0.214 1.214 22 H -0.210 1.210 23 H 0.091 0.909 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.106 0.894 27 H 0.117 0.883 28 H 0.143 0.857 29 H 0.152 0.848 30 H 0.142 0.858 31 H 0.156 0.844 32 H 0.113 0.887 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.022 0.978 39 H 0.027 0.973 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.943 5.260 16.203 18.796 hybrid contribution 0.202 2.184 1.310 2.555 sum 8.145 7.445 17.512 20.699 Atomic orbital electron populations 1.22320 0.94135 1.03569 1.02375 1.20766 0.97081 0.96764 0.91400 0.92673 1.20276 0.89657 1.04903 0.97888 1.30626 1.08856 1.18082 1.18187 1.07373 0.74807 0.77834 0.78041 1.93543 1.39099 1.82827 1.80890 1.93570 1.65012 1.48250 1.84273 1.30732 1.05326 1.13840 1.22386 1.22444 0.88430 0.93497 1.04363 1.63357 1.07304 1.49341 1.04303 1.22541 0.93810 0.99496 0.91318 1.21679 0.99713 1.00524 0.92564 1.19182 0.93673 0.96026 0.93863 1.22070 0.97742 1.45772 0.98230 0.93327 1.25840 0.94673 0.95764 1.02670 1.70761 1.14073 1.40313 1.29991 0.83522 0.75180 0.76384 0.75006 1.21554 1.21449 1.20985 0.90928 0.92314 0.91411 0.89378 0.88332 0.85722 0.84822 0.85784 0.84382 0.88653 0.91650 0.94546 0.89727 0.91753 0.93282 0.97774 0.97293 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 7.76 37.16 0.29 -1.40 16 2 C 0.05 0.49 2.09 -71.35 -0.15 0.34 16 3 H 0.06 0.47 6.49 -51.93 -0.34 0.13 16 4 C -0.09 -0.80 4.70 -29.24 -0.14 -0.94 16 5 C -0.63 -5.08 5.85 38.34 0.22 -4.85 16 6 S 2.44 28.74 4.90 -107.50 -0.53 28.22 16 7 O -0.97 -14.22 18.05 -57.92 -1.05 -15.27 16 8 O -0.91 -14.58 15.89 -57.92 -0.92 -15.50 16 9 C -0.59 -6.19 6.72 38.02 0.26 -5.94 16 10 C 0.04 0.47 5.02 -3.75 -0.02 0.45 16 11 N -0.52 -6.83 3.38 -231.21 -0.78 -7.61 16 12 C 0.05 0.86 3.56 -3.83 -0.01 0.85 16 13 C -0.11 -2.15 4.91 -26.73 -0.13 -2.28 16 14 C 0.01 0.25 4.28 -27.89 -0.12 0.14 16 15 C -0.60 -17.17 9.11 -34.44 -0.31 -17.49 16 16 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 17 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 18 N -0.91 -28.13 13.65 55.43 0.76 -27.37 16 19 Si 1.07 25.59 29.90 -169.99 -5.08 20.50 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H 0.07 0.81 7.40 -51.93 -0.38 0.43 16 24 H 0.06 0.47 8.01 -51.93 -0.42 0.05 16 25 H 0.07 0.73 6.24 -51.93 -0.32 0.40 16 26 H 0.09 0.59 7.99 -51.93 -0.41 0.18 16 27 H 0.10 1.05 7.22 -51.93 -0.37 0.67 16 28 H 0.12 0.68 7.80 -51.76 -0.40 0.28 16 29 H 0.13 0.88 8.14 -51.75 -0.42 0.46 16 30 H 0.12 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.14 1.58 8.14 -51.92 -0.42 1.16 16 32 H 0.10 1.19 5.63 -51.93 -0.29 0.89 16 33 H 0.07 0.53 6.27 -51.93 -0.33 0.20 16 34 H 0.04 0.54 7.19 -51.93 -0.37 0.17 16 35 H 0.08 1.37 6.48 -51.93 -0.34 1.03 16 36 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 37 H 0.05 0.95 6.31 -51.93 -0.33 0.62 16 38 H 0.00 0.10 8.01 -51.93 -0.42 -0.31 16 39 H 0.01 0.23 8.01 -51.93 -0.42 -0.18 16 40 H 0.27 8.17 7.22 -40.82 -0.29 7.88 16 LS Contribution 313.13 15.07 4.72 4.72 Total: -1.00 -35.96 313.13 -9.42 -45.38 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -6.33 Total: -2.26 kcal Atomic # 6 Polarization: -30.60 SS G_CDS: -0.21 Total: -30.81 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: -0.02 Total: -34.98 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -1.97 Total: -30.77 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -5.08 Total: 20.50 kcal Atomic # 16 Polarization: 28.74 SS G_CDS: -0.53 Total: 28.22 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.96 -9.42 -45.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192088820.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.525 kcal (2) G-P(sol) polarization free energy of solvation -35.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds